Eric Coissac 2610a4af79 feat: add Mash distance metric and rolling entropy support ...

Implement the Mash distance metric across the CLI, index, and compact vector traits. This includes adding a `Mash` variant to the `DistanceMetric` enum and `MetricArg` CLI argument, implementing the conversion from Jaccard distances using the standard mutation-rate estimator formula, and updating documentation with supported metrics and algorithmic references. Additionally, add an `entropy` method to rolling statistics for computing order-specific entropy.

2026-07-09 11:40:48 +02:00

..

chunkreader.md

docs: add future work section for parallel gzip decompression

2026-07-07 13:43:01 +02:00

chunkreader.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

evidence_elimination.md

docs: clarify query pipeline, Findere trick, and input formats

2026-05-30 15:59:12 +02:00

evidence_elimination.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

filtering.md

feat: introduce obitaxonomy crate for hierarchical taxonomy parsing

2026-06-22 10:24:04 +02:00

kmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

kmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

merge_parallelism.md

feat: add memory-aware parallel merge scheduling and CLI flags

2026-06-12 11:44:10 +02:00

merge.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

merge.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

mphf.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

mphf.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obicompactvec.md

feat: add Mash distance metric and rolling entropy support

2026-07-09 11:40:48 +02:00

obilayeredmap.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

obilayeredmap.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obipipeline.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

obipipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obitaxonomy.md

feat: introduce obitaxonomy crate for hierarchical taxonomy parsing

2026-06-22 10:24:04 +02:00

persistent_bit_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_bit_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_compact_int_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_compact_int_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

pipeline.md

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

pipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

select.md

refactor: rename rebuild subcommand to filter

2026-06-09 15:26:37 +02:00

storage.md

docs: update architecture and storage specs for approximate index

2026-05-23 13:54:31 +02:00

storage.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

superkmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

superkmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

unitig_evidence.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

unitig_evidence.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00