Eric Coissac cd2f2f9417 fix: validate packed matrix columns before repacking ...

Add header parsing helpers to extract column counts without memory mapping. Update packing functions to verify existing files match current metadata, preventing stale or widened-column artifacts. Extract inline tests in obilayeredmap to an external module and add comprehensive aggregation tests. Bump obikmer to 1.1.35 and clean up repository configuration.

2026-07-03 17:20:22 +02:00

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obicompactvec

fix: validate packed matrix columns before repacking

2026-07-03 17:20:22 +02:00

obidebruinj

feat: add benchmark pipeline, expose APIs, and enforce strict paths

2026-06-22 10:18:33 +02:00

obifastwrite

refactor: extract obikindex crate and remove deprecated CLI commands

2026-05-20 18:54:12 +02:00

obikindex

refactor(numa): replace flat runner with per-node activation channels

2026-07-03 13:03:31 +02:00

obikmer

fix: validate packed matrix columns before repacking

2026-07-03 17:20:22 +02:00

obikpartitionner

feat: add vectorized column filters and optimize partitioner iteration

2026-06-22 09:54:51 +02:00

obikrope

✨ add PhantomData import for generic type safety

2026-04-30 07:04:03 +02:00

obikseq

refactor: optimize unitig iteration and graph traversal

2026-06-05 19:48:59 +02:00

obilayeredmap

fix: validate packed matrix columns before repacking

2026-07-03 17:20:22 +02:00

obipipeline

feat: add pipeline concurrency throttling and HPC build docs

2026-06-15 10:33:23 +02:00

obiread

perf: enable zero-allocation queries and memory-mapped indexes

2026-06-03 10:24:12 +02:00

obiskbuilder

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

obiskio

feat: add iter_canonical_kmers iterator and tests

2026-05-30 16:30:02 +02:00

obisys

feat(numa): introduce I/O sampling to prevent activation stalls

2026-07-02 10:07:22 +02:00

obitaxonomy

feat: introduce obitaxonomy crate for hierarchical taxonomy parsing

2026-06-22 10:24:04 +02:00

Cargo.lock

fix: validate packed matrix columns before repacking

2026-07-03 17:20:22 +02:00

Cargo.toml

feat: add benchmark pipeline, expose APIs, and enforce strict paths

2026-06-22 10:18:33 +02:00

profile.json.gz

🗑️ Refactor entropy and minimizer logic into RollingStat

2026-04-20 16:45:57 +02:00