Eric Coissac
1f9c6388eb
Adds a new binary that validates bit-level consistency between dense and sparse K-mer index representations by sampling slots across partitions and reporting discrepancies. Refactors sibling cache matrix initialization into a centralized factory method to simplify control flow and standardize error handling. Introduces diagnostic configurations, benchmark scripts, and an ignored test case to support k-mer resolution analysis.
19 lines
190 B
Awk
Executable File
19 lines
190 B
Awk
Executable File
#!/usr/bin/awk -f
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/^>/ {
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print
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next
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}
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{
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gsub(/[Aa]/, "a")
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gsub(/[Gg]/, "A")
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gsub(/a/, "G")
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gsub(/[Cc]/, "c")
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gsub(/[Tt]/, "C")
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gsub(/c/, "T")
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print
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}
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