Eric Coissac
22951fb0e8
- Introduce `obipipline` crate with multi-threaded data pipeline architecture - Implement core types: SourceFn, SharedFun (Arc), SinkFN with biased scheduler and crossbeam channels - Add macros: `make_source!`, `transform!/fallible`/sink!, and high-level DSL macro - Replace old wrapper/error modules with unified scheduler module (renamed types, improved error variants) - Update workspace: add `obipipeline` member to Cargo.toml and lockfile - Document pipeline in docmd/implementation with full architecture, error handling & example - Refactor sandbox_pipeline.rs to use new DSL instead of manual channel wiring
46 lines
1.1 KiB
YAML
46 lines
1.1 KiB
YAML
site_name: obikmer
|
|
docs_dir: docmd
|
|
site_dir: doc
|
|
|
|
theme:
|
|
name: material
|
|
|
|
plugins:
|
|
- mermaid2:
|
|
- bibtex:
|
|
bib_file: docmd/references.bib
|
|
csl_file: docmd/ecology-letters.csl
|
|
|
|
markdown_extensions:
|
|
- admonition
|
|
- footnotes
|
|
- tables
|
|
- pymdownx.superfences
|
|
- pymdownx.arithmatex:
|
|
generic: true
|
|
|
|
extra_javascript:
|
|
- https://unpkg.com/mathjax@3/es5/tex-mml-chtml.js
|
|
|
|
nav:
|
|
- Home: index.md
|
|
- Theory:
|
|
- Kmers and super-kmers: theory/kmers.md
|
|
- DNA encoding: theory/encoding.md
|
|
- Entropy filter: theory/entropy.md
|
|
- Partitioning architecture: theory/indexing.md
|
|
- Implementation:
|
|
- SuperKmer: implementation/superkmer.md
|
|
- Kmer: implementation/kmer.md
|
|
- Chunk reader: implementation/chunkreader.md
|
|
- Construction pipeline: implementation/pipeline.md
|
|
- obipipeline library: implementation/obipipeline.md
|
|
- On-disk storage: implementation/storage.md
|
|
- MPHF selection: implementation/mphf.md
|
|
- Architecture:
|
|
- Sequences: architecture/sequences/invariant.md
|
|
|
|
watch:
|
|
- docmd
|
|
- mkdocs.yml
|