Eric Coissac
e1dab86daf
Introduce a new `fingerprint` module that stores packed B-bit vectors via memory-mapped files. Expose the module publicly and add `build_approx_evidence` to `Layer` and `MphfLayer` for generating compact `fingerprint.bin` files. Implement `find_approx` for fast, probabilistic kmer lookups using configurable bit-widths. Update dependencies to `bitvec` v1 and add `cacheline-ef`, `epserde`, and `memmap2` to support the new storage and serialization logic.
23 lines
528 B
TOML
23 lines
528 B
TOML
[package]
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name = "obilayeredmap"
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version = "0.1.0"
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edition = "2024"
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[dependencies]
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obikseq = { path = "../obikseq" }
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obiskio = { path = "../obiskio" }
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obicompactvec = { path = "../obicompactvec" }
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ptr_hash = "1.1"
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cacheline-ef = "1.1"
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epserde = "0.8"
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rayon = "1"
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ndarray = "0.16"
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bitvec = "1"
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memmap2 = "0.9"
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serde = { version = "1", features = ["derive"] }
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serde_json = "1"
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[dev-dependencies]
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tempfile = "3"
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obikseq = { path = "../obikseq", features = ["test-utils"] }
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