obikmer

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Eric Coissac a8bcf5ffac Refactor distance matrix calculation logic for consistency

Ensures that combined distance matrix calculations use the exact same site selection by retaining sampled data within Sankoff bundles. This involves refactoring post-sampling logic into shared functions, implementing `SankoffBundle` to reuse internal tally data, and adding validation to guarantee consistent site selection across all distance calculation paths.

2026-09-12 07:45:32 +02:00

formats

Update documentation for CLI command renames and new commands

2026-08-28 23:06:05 +02:00

theory

docs: add obikmer user guide and MkDocs build configuration

2026-08-13 17:19:01 +02:00

usage

Refactor distance matrix calculation logic for consistency

2026-09-12 07:45:32 +02:00

architecture.md

Update documentation for CLI command renames and new commands