Eric Coissac
abc51c2add
Move partition dereplication logic into a dedicated `obikderep` crate that implements a two-phase hash-split/merge strategy with Rayon for parallel processing. Centralize superkmer file path construction in `obilayeredmap` and update dependent crates to use the new pipeline and shared path helpers. Adjust test suites to explicitly invoke the dereplication step.
22 lines
530 B
TOML
22 lines
530 B
TOML
[package]
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name = "obikderep"
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version = "0.1.0"
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edition = "2024"
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[dependencies]
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niffler = "3.0.0"
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obikseq = { path = "../obikseq" }
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obikindex = { path = "../obikindex" }
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obilayeredmap = { path = "../obilayeredmap" }
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obiskio = { path = "../obiskio" }
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obisys = { path = "../obisys" }
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rayon = "1"
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sysinfo = "0.39"
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tracing = "0.1.44"
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[dev-dependencies]
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tempfile = "3"
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obikseq = { path = "../obikseq", features = ["test-utils"] }
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obikrope = { path = "../obikrope" }
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obiskbuilder = { path = "../obiskbuilder" }
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