Eric Coissac
95fa0c93b2
Restructure the workspace and rename the CLI application to obikmer2. Replace direct KmerIndex usage across all commands with Arc-wrapped IndexCache to enable shared ownership. Introduce builder patterns for algorithmic operations and integrate explicit progress tracking. Add new Phylo, NameTree, and Convert subcommands with expanded CLI flags. Consolidate module structure, update dependency specifications, and remove legacy directories.
6 lines
406 B
TOML
6 lines
406 B
TOML
[workspace]
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resolver = "3"
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members = ["obikseq", "obiread", "obiskbuilder", "obifastwrite", "obikmer","obikrope","obipipeline", "obiskio","obidebruinj", "obicompactvec", "obisys", "obikindex", "obikindexer", "obikquery", "obikdump", "obikfilter", "obikselect", "obikrebuild", "obikmerge", "obikstats", "obikidxcache", "obitaxonomy", "obikentropy", "obikphylo", "obikalgorithm"]
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[profile.release]
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debug = 1
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