Eric Coissac ce45e2fbe1 refactor: centralize k-mer filtering logic and add validation ...

Refactor shared `FilterArgs` and `build_group_filter` to return a `Result` with explicit validation for fraction bounds, min/max ordering, and count constraints. Update conditional defaults for `--min-frac` and `--max-outgroup-count` to depend on explicit quorum flags, preventing silent configuration conflicts. Update documentation and MkDocs navigation to reflect the new centralized k-mer filtering system across `rebuild`, `dump`, and `unitig` commands.

2026-06-09 10:22:25 +02:00

..

chunkreader.md

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

chunkreader.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

evidence_elimination.md

docs: clarify query pipeline, Findere trick, and input formats

2026-05-30 15:59:12 +02:00

evidence_elimination.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

filtering.md

refactor: centralize k-mer filtering logic and add validation

2026-06-09 10:22:25 +02:00

kmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

kmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

merge.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

merge.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

mphf.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

mphf.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obilayeredmap.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

obilayeredmap.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obipipeline.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

obipipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_bit_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_bit_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_compact_int_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_compact_int_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

pipeline.md

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

pipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

storage.md

docs: update architecture and storage specs for approximate index

2026-05-23 13:54:31 +02:00

storage.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

superkmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

superkmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

unitig_evidence.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

unitig_evidence.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00