Eric Coissac 7dd8db1409 docs: document conservative rounding strategy for filtering thresholds ...

Specifies that minimum bounds use ceiling and maximum bounds use floor to enforce strictness. Clarifies that the implementation avoids explicit rounding by directly comparing integer counts against floating-point fractions, which is mathematically equivalent.

2026-06-09 10:26:21 +02:00

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architecture

docs: clarify query pipeline, Findere trick, and input formats

2026-05-30 15:59:12 +02:00

css

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

implementation

docs: document conservative rounding strategy for filtering thresholds

2026-06-09 10:26:21 +02:00

theory

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

apa.csl

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

ecology-letters.csl

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

index.md

refactor: centralize k-mer filtering logic and add validation

2026-06-09 10:22:25 +02:00

index.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

kmers.md

feat: enforce runtime validation for kmer and minimizer parameters

2026-05-29 09:10:25 +02:00

kmers.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

references.bib

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

vancouver.csl

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00