Eric Coissac 00b4b1fa51 docs: add future work section for parallel gzip decompression ...

Proposes replacing the single-threaded niffler/flate2 pipeline in `obiread::xopen` with `rapidgzip-rs` for local `.gz` files. Details constraints such as path dependencies, non-seekable streams, C++ toolchain requirements, and binding maturity. Marks the optimization as parked pending throughput and correctness validation.

2026-07-07 13:43:01 +02:00

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chunkreader.md

docs: add future work section for parallel gzip decompression

2026-07-07 13:43:01 +02:00

chunkreader.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

evidence_elimination.md

docs: clarify query pipeline, Findere trick, and input formats

2026-05-30 15:59:12 +02:00

evidence_elimination.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

filtering.md

feat: introduce obitaxonomy crate for hierarchical taxonomy parsing

2026-06-22 10:24:04 +02:00

kmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

kmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

merge_parallelism.md

feat: add memory-aware parallel merge scheduling and CLI flags

2026-06-12 11:44:10 +02:00

merge.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

merge.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

mphf.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

mphf.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obicompactvec.md

feat(matrix): add partial group reductions and column persistence

2026-06-22 09:49:04 +02:00

obilayeredmap.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

obilayeredmap.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obipipeline.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

obipipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obitaxonomy.md

feat: introduce obitaxonomy crate for hierarchical taxonomy parsing

2026-06-22 10:24:04 +02:00

persistent_bit_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_bit_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_compact_int_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_compact_int_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

pipeline.md

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

pipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

select.md

refactor: rename rebuild subcommand to filter

2026-06-09 15:26:37 +02:00

storage.md

docs: update architecture and storage specs for approximate index

2026-05-23 13:54:31 +02:00

storage.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

superkmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

superkmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

unitig_evidence.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

unitig_evidence.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00