Eric Coissac e66adef23d feat: add select command for genome column projection and aggregation ...

Introduces the `select` CLI command to project and aggregate genome-level k-mer data by column. Adds `filter` as an alias for `rebuild`. The implementation uses parallel partition processing, supports metadata-driven grouping with configurable aggregation operators, and performs atomic in-place rewrites or filtered exports. Updates documentation and navigation accordingly.

2026-06-09 15:09:47 +02:00

..

chunkreader.md

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

chunkreader.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

evidence_elimination.md

docs: clarify query pipeline, Findere trick, and input formats

2026-05-30 15:59:12 +02:00

evidence_elimination.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

filtering.md

docs: document conservative rounding strategy for filtering thresholds

2026-06-09 10:26:21 +02:00

kmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

kmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

merge.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

merge.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

mphf.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

mphf.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obilayeredmap.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

obilayeredmap.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

obipipeline.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

obipipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_bit_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_bit_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

persistent_compact_int_vec.md

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

persistent_compact_int_vec.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

pipeline.md

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

pipeline.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

select.md

feat: add select command for genome column projection and aggregation

2026-06-09 15:09:47 +02:00

storage.md

docs: update architecture and storage specs for approximate index

2026-05-23 13:54:31 +02:00

storage.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

superkmer.md

refactor: update core types and add approximate evidence support

2026-05-26 10:04:25 +02:00

superkmer.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00

unitig_evidence.md

feat: centralize index configuration and add hybrid mode

2026-05-26 15:08:29 +02:00

unitig_evidence.refs.md

docs: add coverage reference files and flag architectural drift

2026-05-23 13:44:23 +02:00