Eric Coissac
e6f0ca472c
Disable the `numa` default feature in CI build and test steps to prevent container environment deadlocks, and add comments explaining the cache key salt bump (`v2`) to mitigate incremental compilation corruption. Document a 16-state Sankoff cost matrix derived from set-edit distances, including substitution, gain/loss, and context-disappearance costs compatible with TNT's interface. Bump `obikmer` crate version to 1.1.43.
44 lines
1.4 KiB
YAML
44 lines
1.4 KiB
YAML
pname: CI
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on:
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pull_request:
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branches: ['main']
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jobs:
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build:
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runs-on: ubuntu-latest
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defaults:
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run:
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working-directory: src
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steps:
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- uses: actions/checkout@v4
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- name: Install Rust
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run: |
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curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
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echo "$HOME/.cargo/bin" >> $GITHUB_PATH
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- name: Cache cargo registry
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uses: actions/cache@v4
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with:
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path: |
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~/.cargo/registry
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~/.cargo/git
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src/target
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key: ${{ runner.os }}-cargo-v2-${{ hashFiles('src/Cargo.lock') }}
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restore-keys: ${{ runner.os }}-cargo-v2-
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# Both `obikmer` and `obikindex` default to the `numa` feature
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# (hwloc-based topology detection + CPU pinning), which is only useful
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# on bare-metal multi-socket indexing hosts. Under this runner's
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# container/cgroup setup it deadlocks at startup — confirmed live
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# (2026-08-11): the same test binary hangs indefinitely with `numa` on
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# and passes instantly, repeatedly, with it off, on the same
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# container. Disable it for CI; it has nothing to do with test
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# correctness.
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- name: Build
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run: cargo build --release --no-default-features
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- name: Test
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run: cargo test --release --no-default-features
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