Eric Coissac edd5e3f8ee feat: add bits-per-kmer diagnostic and stats module ...

Introduce a `stats` module to compute normalized storage efficiency metrics. The new `KmerIndex::bits_per_kmer()` method parallelizes disk I/O across partitions to aggregate file sizes for MPHF, evidence, and matrix components. Publicly export `IndexBitsPerKmer` and add a `--bits-per-kmer` CLI flag to trigger the diagnostic routine and print detailed statistics.

2026-06-04 23:17:17 +02:00

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obicompactvec

refactor: improve resource cleanup and index packing

2026-06-03 15:35:56 +02:00

obidebruinj

refactor: extract obikindex crate and remove deprecated CLI commands

2026-05-20 18:54:12 +02:00

obifastwrite

refactor: extract obikindex crate and remove deprecated CLI commands

2026-05-20 18:54:12 +02:00

obikindex

feat: add bits-per-kmer diagnostic and stats module

2026-06-04 23:17:17 +02:00

obikmer

feat: add bits-per-kmer diagnostic and stats module

2026-06-04 23:17:17 +02:00

obikpartitionner

feat: add kmer filtering and refactor layer iteration

2026-06-04 21:08:15 +02:00

obikrope

✨ add PhantomData import for generic type safety

2026-04-30 07:04:03 +02:00

obikseq

refactor: abstract k-mer types and fix bit alignment

2026-05-31 20:46:49 +02:00

obilayeredmap

feat: introduce packed matrix storage and layer metadata

2026-06-03 14:16:04 +02:00

obipipeline

♻️ refactor pipeline architecture and fix macOS memory detection

2026-04-30 07:04:03 +02:00

obiread

perf: enable zero-allocation queries and memory-mapped indexes

2026-06-03 10:24:12 +02:00

obiskbuilder

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

obiskio

feat: add iter_canonical_kmers iterator and tests

2026-05-30 16:30:02 +02:00

obisys

feat: add obisys crate for standardized CLI progress reporting

2026-06-03 19:03:59 +02:00

Cargo.lock

feat: add selective k-mer filtering to dump and rebuild commands

2026-06-04 21:29:58 +02:00

Cargo.toml

refactor: extract obikindex crate and remove deprecated CLI commands

2026-05-20 18:54:12 +02:00

profile.json.gz

🗑️ Refactor entropy and minimizer logic into RollingStat

2026-04-20 16:45:57 +02:00

Synthese.docx

📦 Add obipipeline crate and refactor path handling

2026-04-23 21:06:11 +02:00