Eric Coissac
912f788f7f
Extracts streaming entropy logic and sliding-window frequency tracking from obiskbuilder into a dedicated obikentropy crate. Introduces an EntropyTracker accumulator for O(1) per-base normalized Shannon entropy, replaces inline rolling statistics with delegated state management, and updates workspace dependencies across obikindex, obikpartitionner, and obiskbuilder. Adds criterion benchmarks to validate the refactored pipeline throughput.
20 lines
452 B
TOML
20 lines
452 B
TOML
[package]
|
|
name = "obiskbuilder"
|
|
version = "0.1.0"
|
|
edition = "2024"
|
|
|
|
[dependencies]
|
|
obikseq = { path = "../obikseq" }
|
|
obikrope = { path = "../obikrope" }
|
|
obiread = { path = "../obiread" }
|
|
obikentropy = { path = "../obikentropy" }
|
|
lazy_static = "1.5.0"
|
|
|
|
[dev-dependencies]
|
|
obikseq = { path = "../obikseq", features = ["test-utils"] }
|
|
criterion2 = { version = "3", features = ["cargo_bench_support"] }
|
|
|
|
[[bench]]
|
|
name = "superkmer_stream"
|
|
harness = false
|