obikmer

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Eric Coissac f7ebc7a1ab Centralize partition directory resolution and add caching design spec

Introduce a design specification outlining performance bottlenecks in layer data access and an agreed-upon implementation direction for caching. Refactor the codebase to centralize index and layer directory path resolution within the partition object, replacing manual string joining and external helper functions with dedicated accessor methods.

2026-08-20 15:10:57 +02:00

architecture

Introduce unified nonzero_iter API across matrix types

2026-08-20 14:07:09 +02:00

css

large refactoring

2026-08-17 09:28:53 +02:00

implementation

Centralize partition directory resolution and add caching design spec

2026-08-20 15:10:57 +02:00

theory

feat(phylo): add --iqtree-min-freq to filter rare nucleotide states