Eric Coissac
a4b57a96de
Introduce the `obiread` crate with a streaming byte normalizer that processes FASTA, FASTQ, and GenBank files using a 64 KiB ring buffer for O(1) memory usage. Integrate this crate into `obiskbuilder` to provide `SuperKmerStreamIter`, enabling memory-efficient superkmer traversal with rolling entropy and minimizer-based cut conditions.
14 lines
290 B
TOML
14 lines
290 B
TOML
[package]
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name = "obiskbuilder"
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version = "0.1.0"
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edition = "2024"
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[dependencies]
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obikseq = { path = "../obikseq" }
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obikrope = { path = "../obikrope" }
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obiread = { path = "../obiread" }
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lazy_static = "1.5.0"
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[dev-dependencies]
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obikseq = { path = "../obikseq", features = ["test-utils"] }
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