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Eric Coissac edited this page 2026-09-12 18:27:37 +02:00
Table of Contents
Wiki sidebar
Theory
Kmer indexing
- DNA encoding
- Kmers
- Minimizer selection
- Super-kmers
- Partitioning and indexing architecture
- Low-complexity kmer filter
Phylogeny
Kmer-based
SNP-based
Usage
- superkmer
- index
- merge
- filter
- select
- query
- dump
- annotate
- phylo
- unitig
- estimate
- convert
- utils
- pack
- Predicates and taxonomy paths
Formats
Wiki sidebar
Theory
Kmer indexing
- DNA encoding
- Kmers
- Minimizer selection
- Super-kmers
- Partitioning and indexing architecture
- Low-complexity kmer filter
Phylogeny
Kmer-based
SNP-based
Usage
- superkmer
- index
- merge
- filter
- select
- query
- dump
- annotate
- phylo
- unitig
- estimate
- convert
- utils
- pack
- Predicates and taxonomy paths