Update documentation for obikmer tool

The documentation now specifies that obikmer is used for counting, indexing, querying, and comparing DNA sequences, and clarifies that the tool targets individual genome datasets and is exposed through a single binary with subcommands.
Eric Coissac committed 2026-09-12 10:53:13 +02:00
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# obikmer # obikmer
`obikmer` is a command-line tool for counting, indexing, querying and comparing DNA sequences represented as kmer sets. It targets individual genome datasets of tens of gigabases, with an emphasis on computational, memory, and disk efficiency. `obikmer` is a command-line tool for counting, indexing, querying and comparing DNA sequences represented as kmer sets. It targets individual genome datasets of tens of gigabases, with an emphasis on computational, memory, and disk efficiency.
All functionality is exposed through a single binary, `obikmer`, organized as subcommands. All functionality is exposed through a single binary, `obikmer`, organized as subcommands.
## Core principles ## Core principles