First commit - second part
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#
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# ------------------------------------------
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# ORG.Annot - Organelle Annotator
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# version 1.0.0 - Sept 2015
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# ------------------------------------------
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#
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# -------------------------
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# -1- Installation
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# -------------------------
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#
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# First check if binaries have been already compiled for your port
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#
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# $ scripts/check_port
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#
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# if it prints :
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#
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# + port <PORTNAME> is correctly installed
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#
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# then everything is fine
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#
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# if it prints :
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#
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# ! port <PORTNAME> not installed
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# ! Please read README.txt for proper installation
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#
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# then, you should first compile binaries for your port
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# please consult: src/README.txt for details
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#
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#
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# -------------------------
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# -2- Distribution organisation
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# -------------------------
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#
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# config : config file for (re)compiling tools
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# data : internal data files (e.g. ChloroDB)
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# detectors : features specific detector scripts
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# ports : binaries for various ports
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# scripts : main scripts directory
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# src : sources for (re)compiling tools
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#
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# -------------------------
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# -3- Usage
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# -------------------------
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#
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# note: all scripts are located in scripts, so you may add
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# this directory in your path
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# e.g. using csh
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# set path = ($path <ROOTDIR>/scripts)
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#
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# @TODO : scripts description
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#
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Vendored
BIN
Binary file not shown.
Executable
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$Id: README.txt 1825 2013-02-26 09:39:47Z viari $
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This directory contains Makefile machine specific configuration files
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(and default targets to help you writing Makefile's)
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These headers should be used with GNU make or compatible
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#
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# portname
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#
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To check your port, issue :
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./guess_port
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if output is 'unknown <mach>:<sys>:<rel>' then you should :
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- add a port entry in guess_port for <mach>:<sys>:<rel>
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- create a ports/<port>.conf configuration file
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(the best is to start from another port file,
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choose whatever looks closest)
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#
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# configuration flags
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#
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auto.conf : the main configuration file :
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- determine the machine port thru 'guess_port' shell
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- include 'default.conf' file
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- include the machine specific 'ports/<port>.conf' file
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default.conf : default configuration (included by 'auto.conf')
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ports/<port>.conf : machine specific configuration (included by 'auto.conf')
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#
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# utility targets
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#
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||||
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targets/help.targ : target for standard help
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targets/propagate.targ : target for propagating targets to subdirectories
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targets/package.targ : default targets for standard package with 'configure'
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targets/empty.targ : default empty targets (defined as double colon rules)
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||||
|
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targets/lxbin.targ : default make targets for standard lx binary (without libraries)
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targets/debug.targ : target to print debug information (for dev.)
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#
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# $Id: auto.conf 1825 2013-02-26 09:39:47Z viari $
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#
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# auto.conf
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# auto configuration file using guess_port
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#
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# this file is included in Makefile
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#
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#
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# default shell for gnu-make
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#
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SHELL = /bin/sh
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#
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# CFGDIR : location of config files = this file directory location
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#
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# CFGPRT : port name (as returned by guess_port)
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#
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# because builtin 'lastword' is missing in gnu-make 3.80
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lastword = $(word $(words $1), $1)
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CFGDIR := $(dir $(call lastword, $(MAKEFILE_LIST)))
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CFGPRT := $(shell $(CFGDIR)guess_port)
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# check if port is correctly defined
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|
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ifneq (1, $(words $(CFGPRT)))
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entry := $(call lastword, $(CFGPRT))
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$(error port is undefined - add entry for "$(entry)" in configuration file -)
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endif
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#
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# PORTNAME : port name to use : default is CFGPRT but may be futher modified
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# by machine specific configuration
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PORTNAME = $(CFGPRT)
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#
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# default configuration
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# may be overriden by machine dependant definitions below
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#
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include $(CFGDIR)default.conf
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#
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# machine dependant definitions
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#
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include $(CFGDIR)ports/$(CFGPRT).conf
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#
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# $Id: default.conf 2007 2013-12-03 14:21:39Z viari $
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#
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# default.conf
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# default configuration flags
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# maybe further redefined by machine specific configuration
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#
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# this file is included by auto.conf
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#
|
||||
|
||||
# ------------------------------------
|
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# General compilation flags
|
||||
# ------------------------------------
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||||
|
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#
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# MACHDEF : define machine and OS specific flags
|
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#
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||||
|
||||
MACHDEF =
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|
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#
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||||
# CC : (ansi C) compiler command to use
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# you may add some machine specific flags (like -arch ...)
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# in the <machine>.conf configuration file
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#
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CC = gcc
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#
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||||
# default compiler optimizer flag
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#
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||||
|
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OPTIM = -O
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|
||||
#
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||||
# CC_LIBS : additionnal machine specific $(CC) libraries
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# like '-lC' on some machines
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#
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||||
|
||||
CC_LIBS =
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|
||||
#
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||||
# MALLOC_LIBS : machine specific malloc librairies
|
||||
# like '-lmalloc' on SGI
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||||
#
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||||
|
||||
MALLOC_LIBS =
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|
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#
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||||
# MATH_LIBS : machine specific math librairies
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||||
# like '-lm' on Solaris
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#
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||||
|
||||
MATH_LIBS =
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#
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||||
# LINT : looks like LINT command does not exist anymore
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# here is a rough replacement
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#
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||||
LINT = gcc -S -Wall -Wno-format-y2k -W -Wstrict-prototypes \
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-Wmissing-prototypes -Wpointer-arith -Wreturn-type \
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-Wcast-qual -Wwrite-strings -Wswitch -Wshadow \
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-Wcast-align -Wbad-function-cast -Wchar-subscripts \
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||||
-Winline -Wnested-externs -Wredundant-decls
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||||
|
||||
# ------------------------------------
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||||
# General system commands
|
||||
# ------------------------------------
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||||
|
||||
#
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||||
# AR : AR archive command
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||||
# ARFLAGS : $(AR) archiving flags
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||||
# ARXFLAGS : $(AR) extraction flags
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#
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AR = ar
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ARFLAGS = rcv
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ARXFLAGS = xv
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#
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# RANLIB : ranlib command
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#
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RANLIB = ranlib
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#
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||||
# DIFF : diff command
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#
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||||
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DIFF = diff
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#
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||||
# TAR : tar command
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||||
#
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||||
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||||
TAR = tar
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||||
|
||||
# ------------------------------------
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||||
# Default locations
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||||
# ------------------------------------
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||||
#
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||||
# PRTDIR : port dependent files location (libraries and binaries)
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# BINDIR : port binaries
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# LIBDIR : port libraries
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#
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PRTDIR = $(CFGDIR)../ports/$(PORTNAME)
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BINDIR = $(PRTDIR)/bin
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LIBDIR = $(PRTDIR)/lib
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# ------------------------------------
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# default gmake variable in implicit rules
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# ------------------------------------
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CFLAGS = $(OPTIM) $(MACHDEF) -I$(INCDIR)
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LDFLAGS = -L$(LIBDIR) -L.
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LDLIBS = $(LIBS) $(MALLOC_LIBS) $(MATH_LIBS) $(CC_LIBS)
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|
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LINTFLAGS = $(MACHDEF) -I$(INCDIR)
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Executable
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#! /bin/sh
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#
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||||
# $Id: guess_port 1825 2013-02-26 09:39:47Z viari $
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||||
#
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# @file: guess_port
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||||
# @desc: attempt to guess the portname
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# @usage: guess_port
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#
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# @history:
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# @+ <Gloup> Nov. 2000 first draft adapted from GNU config.guess
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# @+ <Gloup> Feb. 2010 moved to sh
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#
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mach=`uname -m`
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syst=`uname -s`
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rels=`uname -r`
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case ${mach}:${syst}:${rels} in
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|
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alpha:OSF1:* ) echo alpha-osf1;;
|
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sun4*:SunOS:5.* ) echo sparc-solaris;;
|
||||
i86pc:SunOS:5.* ) echo i386-solaris;;
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||||
sun4*:SunOS:* ) echo sparc-sunos;;
|
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Power*:Darwin:* ) echo ppc-darwin;;
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||||
i*86:Linux:* ) echo i386-linux;;
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x*86*:Linux:* ) echo i386-linux;;
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||||
i*86:Darwin:* ) echo i386-darwin;;
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||||
IP*:IRIX*:* ) echo mips-irix;;
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||||
i*86:MINGW32*:* ) echo x86-mingw32;;
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*) echo unknown ${mach}:${syst}:${rels}; exit 1;;
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esac
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exit 0
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#
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# $Id: i386-darwin.conf 1825 2013-02-26 09:39:47Z viari $
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||||
#
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||||
# i386-darwin.conf
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||||
# configuration file for MacOS-X/Intel-Based/Darwin 1.2 with gcc compiler
|
||||
# this file is included in Makefile
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||||
#
|
||||
# system (uname -srp) : Darwin 8.7.1 i386
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# compiler (cc --version) : i686-apple-darwin8-gcc-4.0.1
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||||
#
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# check tags
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# @uname:uname -srp:Darwin 8.7.1 i386
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# @cc:cc --version:i686-apple-darwin8-gcc-4.0.1
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||||
#
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||||
#
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||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_MACINTEL -DLITTLE_ENDIAN -DMACOSX
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||||
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||||
Executable
+32
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||||
#
|
||||
# $Id: i386-linux.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# i386-linux.conf
|
||||
# configuration file for linux ix86 with GNU gcc compiler
|
||||
# this file is included in Makefile
|
||||
#
|
||||
# system (uname -srp) : Linux 2.2.14-5.0 unknown
|
||||
# compiler (gcc --version) : egcs-2.91.66
|
||||
#
|
||||
# check tags
|
||||
# @uname:uname -srp:Linux 2.2.14-5.0 unknown
|
||||
# @cc:cc --version:egcs-2.91.66
|
||||
#
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_LINUX -DLITTLE_ENDIAN
|
||||
|
||||
#
|
||||
# MATH_LIBS : machine specific math librairies
|
||||
#
|
||||
|
||||
MATH_LIBS = -lm
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||||
|
||||
Executable
+32
@@ -0,0 +1,32 @@
|
||||
#
|
||||
# $Id: ppc-darwin.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# ppc-darwin.conf
|
||||
# configuration file for MacOS-X/Darwin 1.2 with native cc compiler
|
||||
# this file is included in Makefile
|
||||
#
|
||||
# system (uname -srp) : Darwin 1.2 powerpc
|
||||
# compiler (cc --version) : 2.7.2.1
|
||||
#
|
||||
# check tags
|
||||
# @uname:uname -srp:Darwin 1.2 powerpc
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||||
# @cc:cc --version:2.7.2.1
|
||||
#
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_MACPPC -DBIG_ENDIAN
|
||||
|
||||
#
|
||||
# CC : name of (ansi C) compiler to use
|
||||
#
|
||||
|
||||
CC = cc -arch ppc
|
||||
|
||||
Executable
+31
@@ -0,0 +1,31 @@
|
||||
#
|
||||
# $Id: sparc-solaris.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# sparc-solaris.conf
|
||||
# configuration file for sparc solaris with GNU gcc compiler
|
||||
# this file is included in Makefile
|
||||
#
|
||||
# system (uname -srp) : SunOS 5.8 sparc
|
||||
# compiler (gcc --version) : 2.95.2
|
||||
#
|
||||
# check tags
|
||||
# @uname:uname -srp:SunOS 5.8 sparc
|
||||
# @cc:cc --version:2.95.2
|
||||
#
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_SOLARIS -DBIG_ENDIAN
|
||||
|
||||
#
|
||||
# MATH_LIBS : machine specific math librairies
|
||||
#
|
||||
|
||||
MATH_LIBS = -lm
|
||||
@@ -0,0 +1,54 @@
|
||||
#
|
||||
# $Id: x86-mingw32.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# x86-mingw32
|
||||
# configuration file for MinGW with GNU gcc compiler.
|
||||
#
|
||||
# this file is included in Makefile
|
||||
#
|
||||
#
|
||||
|
||||
#
|
||||
# rename PORTNAME safely since MinGW produce pure win32 executables
|
||||
# without dll's
|
||||
#
|
||||
|
||||
PORTNAME = x86-win32
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# CC_LIBS : additionnal machine specific $(CC) libraries
|
||||
#
|
||||
# libiberty is needed for some system extensions (like mkstemps)
|
||||
#
|
||||
|
||||
CC_LIBS = -liberty
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
# -DDLMALLOC : use dlmalloc instead of malloc (which does not have mallinfo)
|
||||
# -posix is a new replacement for several MinGW32 flags, including:
|
||||
# -D__USE_MINGW_ANSI_STDIO : mingw gcc flag to recognize the C99 "%zu" format
|
||||
#
|
||||
|
||||
MACHDEF = -posix -DLX_TARGET_WIN32 -DWIN_MINGW -DDLMALLOC -DLITTLE_ENDIAN
|
||||
|
||||
#
|
||||
# MATH_LIBS : machine specific math librairies
|
||||
#
|
||||
|
||||
MATH_LIBS = -lm
|
||||
|
||||
# ------------------------------------
|
||||
# General system commands
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# DIFF : diff command / should ignore cr on windows
|
||||
#
|
||||
|
||||
DIFF = diff --strip-trailing-cr
|
||||
@@ -0,0 +1,25 @@
|
||||
#
|
||||
# $Id: help.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# debug.targ
|
||||
#
|
||||
# target to print debug information (dev. only)
|
||||
#
|
||||
# it defines the following targets:
|
||||
#
|
||||
# debug :
|
||||
# print debug
|
||||
#
|
||||
# it requires auto.conf
|
||||
#
|
||||
|
||||
.PHONY: debug
|
||||
|
||||
debug::
|
||||
@echo "+ PORTNAME: $(PORTNAME)"
|
||||
@echo "+ CFGPRT: $(CFGPRT)"
|
||||
@echo "+ CFGDIR: $(CFGDIR)"
|
||||
@echo "+ PRTDIR: $(PRTDIR)"
|
||||
@echo "+ MACHDEF: $(MACHDEF)"
|
||||
|
||||
|
||||
@@ -0,0 +1,24 @@
|
||||
#
|
||||
# $Id: $
|
||||
#
|
||||
# epty.targ
|
||||
#
|
||||
# default empty targets (defined as double colon rules)
|
||||
#
|
||||
#
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all test clean portclean help
|
||||
|
||||
all::
|
||||
|
||||
test::
|
||||
|
||||
clean::
|
||||
|
||||
portclean:: clean
|
||||
|
||||
test::
|
||||
@@ -0,0 +1,23 @@
|
||||
#
|
||||
# $Id: help.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# help.targ
|
||||
#
|
||||
# default target to print help
|
||||
#
|
||||
# it defines the following targets:
|
||||
#
|
||||
# help :
|
||||
# print help
|
||||
#
|
||||
|
||||
.PHONY: help
|
||||
|
||||
help::
|
||||
@ echo "basic usage: make [<action>+]"
|
||||
@ echo "valid <action> :"
|
||||
@ echo " all : compile everything for current port [default target]"
|
||||
@ echo " clean : local cleanup"
|
||||
@ echo " portclean : cleanup distribution for current port"
|
||||
@ echo " test : run tests on current port"
|
||||
@ echo " help : print this help"
|
||||
@@ -0,0 +1,51 @@
|
||||
#
|
||||
# $Id: $
|
||||
#
|
||||
# lxbin.targ
|
||||
#
|
||||
# default make targets for standard lx binary
|
||||
#
|
||||
# you should define the 'PROGS' and 'OSRC' variables
|
||||
# and optionnaly 'LIBS' if binaries have to be linked with libraries
|
||||
#
|
||||
# note: if main source code for binary PROG is PROG.c, there is nothing to do,
|
||||
# else (e.g. if it involves several sources files) you should also add local
|
||||
# file dependencies. e.g under the form:
|
||||
#
|
||||
# mymain: $(OBJ) mymain_base.c mymain_help.c
|
||||
# $(CC) $(CFLAGS) -o $@ $^ $(LDFLAGS) $(LDLIBS)
|
||||
#
|
||||
#
|
||||
# 'auto.conf' should have been included
|
||||
#
|
||||
|
||||
OBJ = $(OSRC:.c=.o)
|
||||
|
||||
INCDIR = ../include
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all prelib install test clean portclean
|
||||
|
||||
all:: prelib $(PROGS) install
|
||||
@echo "+++++++++++ binaries $(PROGS) done"
|
||||
|
||||
prelib::
|
||||
test -d $(PRTDIR) || mkdir $(PRTDIR) # because some linker may complain
|
||||
test -d $(LIBDIR) || mkdir $(LIBDIR) # if -L$(LIBDIR) does not exist
|
||||
|
||||
install::
|
||||
test -d $(PRTDIR) || mkdir $(PRTDIR)
|
||||
test -d $(BINDIR) || mkdir $(BINDIR)
|
||||
-for f in $(PROGS) ; do \cp -f $$f $(BINDIR) ; done
|
||||
|
||||
test::
|
||||
|
||||
clean::
|
||||
-\rm -f *.o cvstatic* *% *.bak so_loc*
|
||||
-\rm -f $(PROGS)
|
||||
|
||||
portclean:: clean
|
||||
-(! test -d $(BINDIR)) || (cd $(BINDIR) && \rm -f $(PROGS))
|
||||
@@ -0,0 +1,43 @@
|
||||
#
|
||||
# $Id: $
|
||||
#
|
||||
# lxlib.targ
|
||||
#
|
||||
# default make targets for standard lx library
|
||||
#
|
||||
# you should define the 'LOCLIB' and 'OSRC' variables
|
||||
#
|
||||
# 'auto.conf' should have been included
|
||||
#
|
||||
|
||||
OBJ = $(OSRC:.c=.o)
|
||||
|
||||
INCDIR = ../include
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all lib install test clean portclean
|
||||
|
||||
all:: lib install
|
||||
@echo "+++++++++++ library $(LOCLIB) done"
|
||||
|
||||
lib:: $(OBJ)
|
||||
$(AR) $(ARFLAGS) $(LOCLIB) $(OBJ)
|
||||
$(RANLIB) $(LOCLIB)
|
||||
|
||||
install::
|
||||
test -d $(PRTDIR) || mkdir $(PRTDIR)
|
||||
test -d $(LIBDIR) || mkdir $(LIBDIR)
|
||||
\cp -f $(LOCLIB) $(LIBDIR)
|
||||
$(RANLIB) $(LIBDIR)/$(LOCLIB)
|
||||
|
||||
test::
|
||||
|
||||
clean::
|
||||
-\rm -f *.o cvstatic* *% *.bak so_loc*
|
||||
-\rm -f $(LOCLIB)
|
||||
|
||||
portclean:: clean
|
||||
-(! test -d $(LIBDIR)) || (cd $(LIBDIR) && \rm -f $(LOCLIB))
|
||||
@@ -0,0 +1,48 @@
|
||||
#
|
||||
# $Id: package.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# package.targ
|
||||
#
|
||||
# default make targets for standard package with configure
|
||||
#
|
||||
# you should define the 'PKG' variable
|
||||
# (and optionaly 'PKGTAR', 'PKGDIR')
|
||||
#
|
||||
|
||||
PKGTAR ?= $(PKG).tgz
|
||||
|
||||
PKGDIR ?= build.$(PORTNAME)
|
||||
|
||||
PRTPATH = $(abspath $(PRTDIR))
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all clean test portclean pkg pkg.expand pkg.make pkg.install
|
||||
|
||||
all:: pkg
|
||||
|
||||
pkg.expand::
|
||||
test -d $(PKGDIR) || mkdir $(PKGDIR)
|
||||
test -f $(PKGDIR)/configure || $(TAR) zxf $(PKGTAR) -C $(PKGDIR) --strip-components 1
|
||||
|
||||
pkg.make:: pkg.expand
|
||||
test -f $(PKGDIR)/Makefile || (cd $(PKGDIR) && ./configure --prefix=$(PRTPATH))
|
||||
$(MAKE) -C $(PKGDIR)
|
||||
|
||||
pkg.install:: pkg.make
|
||||
$(MAKE) -C $(PKGDIR) install
|
||||
|
||||
pkg:: pkg.install
|
||||
@echo "+++++++++++ package $(PKG) done"
|
||||
|
||||
test::
|
||||
(! test -d $(PKGDIR)) || $(MAKE) -C $(PKGDIR) test
|
||||
|
||||
clean::
|
||||
(! test -d $(PKGDIR)) || $(MAKE) -C $(PKGDIR) clean
|
||||
|
||||
portclean::
|
||||
(! test -d $(PKGDIR)) || $(MAKE) -C $(PKGDIR) distclean
|
||||
(! test -d $(PKGDIR)) || \rm -r $(PKGDIR)
|
||||
@@ -0,0 +1,30 @@
|
||||
#
|
||||
# $Id: propagate.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# propagate.targ
|
||||
#
|
||||
# default make targets for library containers
|
||||
#
|
||||
# you should define the 'DIRS' variable
|
||||
#
|
||||
# It will propagate 'MAKE <target>' to all
|
||||
# directories listed in DIRS
|
||||
#
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all _action $(DIRS)
|
||||
|
||||
.DEFAULT:
|
||||
$(MAKE) ACTION=$@ _action
|
||||
|
||||
all::
|
||||
$(MAKE) ACTION=all _action
|
||||
|
||||
_action: $(DIRS)
|
||||
@echo "$(ACTION) done"
|
||||
|
||||
$(DIRS):
|
||||
$(MAKE) -C $@ $(ACTION)
|
||||
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
@@ -0,0 +1,381 @@
|
||||
CLUSTAL W (1.7) multiple sequence alignment
|
||||
|
||||
|
||||
NC_000932_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_001320_LCS taaggtagcggcgagacgagccg-------------------------------------
|
||||
NC_004677_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_008115_LCS gaaggtcacggcgagacgagctg-------------------------------------
|
||||
NC_006290_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_007942_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026134_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_011828_LCS gaaggtcacggcgagactagccg-------------------------------------
|
||||
NC_009618_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_002693_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_005086_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_009259_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_024021_LCS --aggtcatggcgagacgagccg-------------------------------------
|
||||
NC_008335_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026295_LCS --aggtcacggcgagacgagccg-------------------------------------
|
||||
NC_016708_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_008796_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_010442_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_021425_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_007407_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_015891_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_016064_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_001631_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_005087_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_021449_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_023119_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_023090_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_015621_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_009271_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_003119_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_007144_LCS gaaggtcacggcgagatgagccg-------------------------------------
|
||||
NC_009766_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_025744_LCS -aaggtcacggcgagactagccg-------------------------------------
|
||||
NC_001568_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_009765_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_017006_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_008829_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_014676_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_025236_LCS taaggtagcggcgagacgagccg-------------------------------------
|
||||
NC_023533_LCS taaggtagcggcgagacgagccg-------------------------------------
|
||||
NC_014062_LCS taaggtagcggcgagacgagccg-------------------------------------
|
||||
NC_020321_LCS taaggtcaaggcgagacgagcct-------------------------------------
|
||||
NC_012818_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_022137_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_014348_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_024158_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_014699_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_010109_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_014592_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_014675_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_024291_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_019628_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_020146_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_015402_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_004766_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_012052_LCS taaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_001319_LCS taaggtcacggcaagactagccg-------------------------------------
|
||||
NC_004543_LCS taaggtcacggcaagatgagccg-------------------------------------
|
||||
NC_020259_LCS taaggtcacggcaagatgagccg-------------------------------------
|
||||
NC_025659_LCS taaggtcacggcgagacgagcca-------------------------------------
|
||||
NC_026775_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026773_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_025305_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_011954_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026301_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_010654_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026778_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_021936_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026776_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_014056_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026449_LCS taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_024945_LCS taaggtcacggcgagatgagccg-------------------------------------
|
||||
NC_026785_LCS taaggtcacggctagacgagccg-------------------------------------
|
||||
NC_023805_LCS taaggtcacggtgagactagccg-------------------------------------
|
||||
NC_024827_LCS taaggtcacggtgagactagccg-------------------------------------
|
||||
NC_020365_LCS taaggtcacgtcgagacgagccg-------------------------------------
|
||||
NC_010548_LCS taaggtcatggcgagacgagccg-------------------------------------
|
||||
NC_013086_LCS tgaggtcacggcaagatgagccg-------------------------------------
|
||||
NC_006861_LCS -aaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_003386_LCS -aaggtcacggcaagacgagccg-------------------------------------
|
||||
NC_016471_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_010359_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_020372_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_014582_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_024421_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_018114_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_026847_LCS -aaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_023120_LCS -aaggtcacggtgagactagccg-------------------------------------
|
||||
NC_014874_LCS -aaggtcacggttagacgagccg-------------------------------------
|
||||
NC_011942_LCS -------------agacgagccg-------------------------------------
|
||||
NC_016065_LCS agaggtcttggcgagactagcca-------------------------------------
|
||||
NC_022136_LCS caaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_014063_LCS caaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_023121_LCS -caggtcacggcgagacgagccg-------------------------------------
|
||||
NC_021110_LCS cgaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_016063_LCS cgaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_025642_LCS gaaggtcacggcgagacgagcca-------------------------------------
|
||||
NC_026202_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_009266_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_002202_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_025554_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_021111_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_023359_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_010776_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_024635_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_025907_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_008336_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_022457_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_023259_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_025909_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_024038_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_014057_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_002694_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_010433_LCS_CMP gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_001666_LCS_CMP taaggtagcggcgagacgagccg-------------------------------------
|
||||
NC_013991_LCS_CMP taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_024168_LCS_CMP --aggtcacggcaagacgagccg-------------------------------------
|
||||
NC_023356_LCS_CMP taaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_013707_LCS_CMP gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_021372_LCS taaggtagcggcgagacgagccg-------------------------------------
|
||||
NC_007578_LCS gaaggtcacggcgagacgagccg-------------------------------------
|
||||
NC_008454_LCS gaaggtcacggcgagacgagccg------------------tttatcatattactcaatt
|
||||
NC_014569_LCS gaaggtcacggcgagacgagccgtttgttttagagtgtcaaagtcttgagaattcaggcg
|
||||
NC_026448_LCS taaggtcgcggcgagatgatccg-------------------------------------
|
||||
|
||||
|
||||
NC_000932_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_001320_LCS ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_004677_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_008115_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_006290_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_007942_LCS ----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026134_LCS ----------tttatcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_011828_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
NC_009618_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_002693_LCS ----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_005086_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_009259_LCS ----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024021_LCS ----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_008335_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026295_LCS ----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_016708_LCS ----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_008796_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_010442_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_021425_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_007407_LCS ----------tttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
|
||||
NC_015891_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_016064_LCS ----------tttatcatt---acgataggtgtcaagtggaagtacagtgatgtatg-ca
|
||||
NC_001631_LCS ----------tttataatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_005087_LCS ----------tttatcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_021449_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023119_LCS ----------tttttcatt---ccgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023090_LCS ----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_015621_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_009271_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_003119_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
NC_007144_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_009766_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025744_LCS -----------ttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
NC_001568_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_009765_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_017006_LCS ----------tttatcacc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_008829_LCS ----------tttatcact---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_014676_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025236_LCS ----------ttta----------aataggtgtcaagtggaagtacagtgatgtatg-ca
|
||||
NC_023533_LCS ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014062_LCS ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_020321_LCS ----------tttatcaa----acgataggtatcaagtggaagtgcagtgatgtacg-ca
|
||||
NC_012818_LCS ----------tttatcacc---acgataggtgccaagtggaggtgcagtaatgtatg-ca
|
||||
NC_022137_LCS ----------tttatcacc---acgataggtgccaagtggaggtgcagtgatgcatg-ca
|
||||
NC_014348_LCS ----------tttatcact---acgataggtgctaagtggaggtgcagtaatgtatg-ca
|
||||
NC_024158_LCS ----------tttatcatc---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
NC_014699_LCS ----------tttatcatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
NC_010109_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014592_LCS ----------tttatcgcc---acaataggtgctaagtggaggtgcagtaatgtatg-ca
|
||||
NC_014675_LCS ----------tttatcgtc---acgataggtgccaagtggaagtgcagtaatgcatg-ca
|
||||
NC_024291_LCS ----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_019628_LCS ----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
NC_020146_LCS ----------tttatgatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
NC_015402_LCS ----------tttattata---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
NC_004766_LCS ----------tttctcact---acgataggtgctaagtggaagtgcagtaatgtatg-ca
|
||||
NC_012052_LCS ----------tttgttatt---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_001319_LCS ----------tttattttt---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
NC_004543_LCS ----------tttatcata---acaataggtgccaagtagaagtgcagtaatgtatg-ca
|
||||
NC_020259_LCS ----------tttatcata---acaataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_025659_LCS ----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026775_LCS ----------cttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026773_LCS ----------cttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025305_LCS --------------ttatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_011954_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_026301_LCS ----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
NC_010654_LCS ----------tttatcatc---acgataggtgtcaagtggagatgcagtgatgtatg-ca
|
||||
NC_026778_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_021936_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026776_LCS ----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014056_LCS ----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026449_LCS ----------tgtatcaac---attataggtgccgagtgtaagtgcggcgatgcatg-ca
|
||||
NC_024945_LCS ----------tttatcag----acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026785_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023805_LCS ----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024827_LCS ----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
NC_020365_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
NC_010548_LCS ----------tttattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_013086_LCS ----------tttatcata---acgataggtgccaggtggaagtgcagtcatgtacg-ca
|
||||
NC_006861_LCS ----------tttatcatc---acgataggtgccaagtggaaatacagtaatgtatg-ca
|
||||
NC_003386_LCS ----------tttattatc---acgataggtgccaagtggaagtgcagtaatgtacg-ca
|
||||
NC_016471_LCS ----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_010359_LCS ----------tttatcatc---acgataggtgccaggtggaagtgcagtgatgtatg-ta
|
||||
NC_020372_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014582_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024421_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
NC_018114_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026847_LCS ----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023120_LCS ----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
NC_014874_LCS ----------tttattatt---atgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_011942_LCS ----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
NC_016065_LCS ----------gcgattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_022136_LCS ----------tttctcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_014063_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
NC_023121_LCS ----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_021110_LCS ----------tttatcag----acgataggtgttaagtgaaagtacagtgatgtatg-ca
|
||||
NC_016063_LCS ----------tttatcag----acgataggtgttaagtgaaagtgcagtgatgtatg-ca
|
||||
NC_025642_LCS ----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
NC_026202_LCS ----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_009266_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_002202_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025554_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgtagtgatgtatg-ca
|
||||
NC_021111_LCS ----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
NC_023359_LCS ----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
NC_010776_LCS ----------tttatcatt---acgataggtgtcaggtggaagtgcagtgatgtatg-ca
|
||||
NC_024635_LCS ----------tttatcatt---ataataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025907_LCS ----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_008336_LCS ----------tttattatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
NC_022457_LCS ----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023259_LCS ----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025909_LCS ----------tttctaatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024038_LCS ----------tttctaatt--aacgataggtgtcaggtggaagtgcagtaatgtacg-ca
|
||||
NC_014057_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtacagtaatgtatg-ca
|
||||
NC_002694_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_010433_LCS_CMP ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_001666_LCS_CMP ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_013991_LCS_CMP ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024168_LCS_CMP ----------tttt---ag---acaataggtgccaggtggaagcgcagtaatgtgtg-ca
|
||||
NC_023356_LCS_CMP ----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_013707_LCS_CMP ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_021372_LCS ----------ttt----------aaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_007578_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_008454_LCS gatcattacgtttatcatt---acgataggtgttaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014569_LCS cggcccgtcctttagagcaaaacaaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026448_LCS ----------ttgatagtgactatgataggtactaagtgtaaatgcagcgatgtatgtta
|
||||
|
||||
|
||||
NC_000932_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_001320_LCS gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
NC_004677_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_008115_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_006290_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_007942_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_026134_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_011828_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_009618_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_002693_LCS gctgagacatcctaacagaccgctagacttgaac-
|
||||
NC_005086_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_009259_LCS gctgaggcatcctaacagaccgttagacttgaac-
|
||||
NC_024021_LCS gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
NC_008335_LCS gctgaggcatcctaacagaccga------------
|
||||
NC_026295_LCS gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
NC_016708_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_008796_LCS gctgaggcatcctaacagaccaatagacttgaac-
|
||||
NC_010442_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_021425_LCS gctgaggcatcctaacagaccgttagacttgaac-
|
||||
NC_007407_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_015891_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_016064_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_001631_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_005087_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_021449_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_023119_LCS gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_023090_LCS gcggaggcatcctaacagaccggtagacttgaac-
|
||||
NC_015621_LCS gctgaggcatcctaacagaccggtagact------
|
||||
NC_009271_LCS gctgaggcatcctaacagaccggtagacttgaa--
|
||||
NC_003119_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_007144_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_009766_LCS gctgaggcatcctaatagaccggtagacttgaac-
|
||||
NC_025744_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_001568_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_009765_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_017006_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_008829_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_014676_LCS gctgaggcatcctaacagaccggcagacttgaac-
|
||||
NC_025236_LCS gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
NC_023533_LCS gctgaggcatcctaaccaa-cgaacgatttgaac-
|
||||
NC_014062_LCS gctgaggcatcctaat-gaacgaacgatttgaac-
|
||||
NC_020321_LCS gctgaggcatcctaacagaccgaaagattttaac-
|
||||
NC_012818_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_022137_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_014348_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_024158_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_014699_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_010109_LCS gctgagacatcctaacagaccgagagatttgaac-
|
||||
NC_014592_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_014675_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_024291_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_019628_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_020146_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_015402_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_004766_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_012052_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_001319_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_004543_LCS gctgaggcattctaacagaccgagagatttgaac-
|
||||
NC_020259_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_025659_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_026775_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_026773_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_025305_LCS gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_011954_LCS gctgagacatcctaacagaccgagagatttgaac-
|
||||
NC_026301_LCS gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
NC_010654_LCS gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
NC_026778_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_021936_LCS gctgaggcattctaacagaccgagagatttgaac-
|
||||
NC_026776_LCS gctgaggcatcctaatagaccgagagatttgaac-
|
||||
NC_014056_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_026449_LCS gctgaggcatactaaaagaccgatatattttaac-
|
||||
NC_024945_LCS gctgaggcatcctaacagactaaaagatttgaac-
|
||||
NC_026785_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_023805_LCS gctaaggcatcctaatagaccgaaagatttgaac-
|
||||
NC_024827_LCS gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_020365_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_010548_LCS gccgaggcatcctaagagaccggaagatttgaac-
|
||||
NC_013086_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_006861_LCS gctgaggcatcctaacagaccaagagatttgaacc
|
||||
NC_003386_LCS gctgaggcatcctaacagaccgatggctttgaacc
|
||||
NC_016471_LCS gctgaggcatcctaacagaccaagagatttgaac-
|
||||
NC_010359_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_020372_LCS gctgaggcatcctaacagaccgatagatttgaac-
|
||||
NC_014582_LCS gctgaggcatcctaacagaccagtagacttgaac-
|
||||
NC_024421_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_018114_LCS gctgaggcatcctaacagaccgagagatttgaacc
|
||||
NC_026847_LCS gctgaggcatcctaacagaccgcaagacttga---
|
||||
NC_023120_LCS gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_014874_LCS gctgaggcatactaacagaccgagagattttaacc
|
||||
NC_011942_LCS gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
NC_016065_LCS gccgagacatcctaagagaccaaaagatttgaac-
|
||||
NC_022136_LCS gctgaggcatcctaacagaccggaagatttgaac-
|
||||
NC_014063_LCS gctgagtcatcctaacagaccgatagacttgaac-
|
||||
NC_023121_LCS gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
NC_021110_LCS gccaaggcatcctaacagaccga-agatttgaacc
|
||||
NC_016063_LCS gccaaggcatcctaacagaccga-agatttgaacc
|
||||
NC_025642_LCS gctgagacatcctaacagaccggtagacttgaac-
|
||||
NC_026202_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_009266_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_002202_LCS gctgaggcatcctaacagacccacagacttgaac-
|
||||
NC_025554_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_021111_LCS gctgagacatcctaacagaccggtagacttgaac-
|
||||
NC_023359_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_010776_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_024635_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_025907_LCS gctgaggcatcctaacagaccacaagacttgaac-
|
||||
NC_008336_LCS gctgaggcatcctaacagaccgacagacttgaac-
|
||||
NC_022457_LCS gctgaggcatcctaacagaccgccagacttgaac-
|
||||
NC_023259_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_025909_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_024038_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_014057_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_002694_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_010433_LCS_CMP gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_001666_LCS_CMP gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
NC_013991_LCS_CMP gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_024168_LCS_CMP gccgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_023356_LCS_CMP gctgaggcatcctaacagaccgatagatttgaac-
|
||||
NC_013707_LCS_CMP gctgaggcatcctaacagaccggtagacttgaa--
|
||||
NC_021372_LCS gctgaggcatcctaacgaac-gaacgatttgaac-
|
||||
NC_007578_LCS gctgaggcatcctaacagaccggtagacttgaacc
|
||||
NC_008454_LCS gctgaggcatcctaacagaccgttagacttgaac-
|
||||
NC_014569_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_026448_LCS gcttaggtatcctaaaagaccgatttatttgaac-
|
||||
|
||||
|
||||
@@ -0,0 +1,496 @@
|
||||
>NC_000932_LCS count=162; cluster_center=True; seq_length=103; cluster=NC_000932_LCS; cluster_score=1.0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_001320_LCS count=84; cluster_center=False; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.847619; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
>NC_004677_LCS count=72; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.961538; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_008115_LCS count=39; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagctg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_006290_LCS count=17; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_007942_LCS count=10; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.961538; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_026134_LCS count=6; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.990385; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_011828_LCS count=6; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.951923; cluster_weight=559;
|
||||
gaaggtcacggcgagactagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_009618_LCS count=5; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_002693_LCS count=5; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccgctagacttgaac-
|
||||
>NC_005086_LCS count=5; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_009259_LCS count=4; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgttagacttgaac-
|
||||
>NC_024021_LCS count=4; cluster_center=False; seq_length=96; cluster=NC_000932_LCS; cluster_score=0.834951; Strand=1; cluster_weight=559;
|
||||
--aggtcatggcgagacgagccg-------------------------------------
|
||||
----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
>NC_008335_LCS count=4; cluster_center=False; seq_length=91; cluster=NC_000932_LCS; cluster_score=0.883495; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccga------------
|
||||
>NC_026295_LCS count=4; cluster_center=False; seq_length=96; cluster=NC_000932_LCS; cluster_score=0.84466; Strand=1; cluster_weight=559;
|
||||
--aggtcacggcgagacgagccg-------------------------------------
|
||||
----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
>NC_016708_LCS count=4; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.980769; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_008796_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccaatagacttgaac-
|
||||
>NC_010442_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_021425_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgttagacttgaac-
|
||||
>NC_007407_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_015891_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_016064_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtacagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_001631_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttataatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_005087_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.923077; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_021449_LCS count=3; cluster_center=False; seq_length=105; cluster=NC_000932_LCS; cluster_score=0.980952; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_023119_LCS count=2; cluster_center=False; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.941748; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt---ccgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_023090_LCS count=2; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.971154; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gcggaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_015621_LCS count=2; cluster_center=False; seq_length=98; cluster=NC_000932_LCS; cluster_score=0.951456; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagact------
|
||||
>NC_009271_LCS count=2; cluster_center=False; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaa--
|
||||
>NC_003119_LCS count=2; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.971154; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_007144_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagatgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_009766_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaatagaccggtagacttgaac-
|
||||
>NC_025744_LCS count=2; cluster_center=False; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=1; cluster_weight=559;
|
||||
-aaggtcacggcgagactagccg-------------------------------------
|
||||
-----------ttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_001568_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_009765_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_017006_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcacc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_008829_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcact---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_014676_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggcagacttgaac-
|
||||
>NC_025236_LCS count=1; cluster_center=False; cut=117439..117533; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.838095; Strand=0; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtacagtgatgtatg-ca
|
||||
gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
>NC_023533_LCS count=1; cluster_center=False; cut=117008..117102; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.839623; Strand=0; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaaccaa-cgaacgatttgaac-
|
||||
>NC_014062_LCS count=1; cluster_center=False; cut=121161..121255; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.838095; Strand=0; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaat-gaacgaacgatttgaac-
|
||||
>NC_020321_LCS count=1; cluster_center=False; cut=101414..101515; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.893204; Strand=1; cluster_weight=559;
|
||||
taaggtcaaggcgagacgagcct-------------------------------------
|
||||
----------tttatcaa----acgataggtatcaagtggaagtgcagtgatgtacg-ca
|
||||
gctgaggcatcctaacagaccgaaagattttaac-
|
||||
>NC_012818_LCS count=1; cluster_center=False; cut=152550..152652; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcacc---acgataggtgccaagtggaggtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_022137_LCS count=1; cluster_center=False; cut=150383..150485; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcacc---acgataggtgccaagtggaggtgcagtgatgcatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_014348_LCS count=1; cluster_center=False; cut=148751..148853; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.895238; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcact---acgataggtgctaagtggaggtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_024158_LCS count=1; cluster_center=False; cut=138359..138461; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_014699_LCS count=1; cluster_center=False; cut=125720..125822; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.923077; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_010109_LCS count=1; cluster_center=False; cut=142992..143094; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccgagagatttgaac-
|
||||
>NC_014592_LCS count=1; cluster_center=False; cut=152146..152248; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.866667; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcgcc---acaataggtgctaagtggaggtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_014675_LCS count=1; cluster_center=False; cut=134461..134563; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcgtc---acgataggtgccaagtggaagtgcagtaatgcatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_024291_LCS count=1; cluster_center=False; cut=119572..119674; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_019628_LCS count=1; cluster_center=False; cut=113128..113230; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_020146_LCS count=1; cluster_center=False; cut=124175..124277; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatgatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_015402_LCS count=1; cluster_center=False; cut=111547..111649; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttattata---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_004766_LCS count=1; cluster_center=False; cut=146832..146934; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.895238; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttctcact---acgataggtgctaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_012052_LCS count=1; cluster_center=False; cut=114432..114534; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttgttatt---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_001319_LCS count=1; cluster_center=False; cut=113188..113290; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagactagccg-------------------------------------
|
||||
----------tttattttt---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_004543_LCS count=1; cluster_center=False; cut=147535..147637; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.884615; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagatgagccg-------------------------------------
|
||||
----------tttatcata---acaataggtgccaagtagaagtgcagtaatgtatg-ca
|
||||
gctgaggcattctaacagaccgagagatttgaac-
|
||||
>NC_020259_LCS count=1; cluster_center=False; cut=144766..144868; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagatgagccg-------------------------------------
|
||||
----------tttatcata---acaataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_025659_LCS count=1; cluster_center=False; cut=124686..124788; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagcca-------------------------------------
|
||||
----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_026775_LCS count=1; cluster_center=False; cut=130118..130220; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------cttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_026773_LCS count=1; cluster_center=False; cut=131757..131859; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------cttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_025305_LCS count=1; cluster_center=False; cut=135472..135570; seq_length=99; cluster=NC_000932_LCS; cluster_score=0.92233; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
--------------ttatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_011954_LCS count=1; cluster_center=False; cut=93045..93147; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.932692; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgagacatcctaacagaccgagagatttgaac-
|
||||
>NC_026301_LCS count=1; cluster_center=False; cut=97098..97200; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.914286; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
>NC_010654_LCS count=1; cluster_center=False; cut=101596..101698; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.92381; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggagatgcagtgatgtatg-ca
|
||||
gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
>NC_026778_LCS count=1; cluster_center=False; cut=126845..126947; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_021936_LCS count=1; cluster_center=False; cut=132851..132953; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcattctaacagaccgagagatttgaac-
|
||||
>NC_026776_LCS count=1; cluster_center=False; cut=134622..134724; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaatagaccgagagatttgaac-
|
||||
>NC_014056_LCS count=1; cluster_center=False; cut=122521..122623; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_026449_LCS count=1; cluster_center=False; cut=19564..19668; seq_length=105; cluster=NC_000932_LCS; cluster_score=0.813084; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tgtatcaac---attataggtgccgagtgtaagtgcggcgatgcatg-ca
|
||||
gctgaggcatactaaaagaccgatatattttaac-
|
||||
>NC_024945_LCS count=1; cluster_center=False; cut=109064..109165; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.896226; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcgagatgagccg-------------------------------------
|
||||
----------tttatcag----acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagactaaaagatttgaac-
|
||||
>NC_026785_LCS count=1; cluster_center=False; cut=132320..132422; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggctagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_023805_LCS count=1; cluster_center=False; cut=98463..98565; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=0; cluster_weight=559;
|
||||
taaggtcacggtgagactagccg-------------------------------------
|
||||
----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctaaggcatcctaatagaccgaaagatttgaac-
|
||||
>NC_024827_LCS count=1; cluster_center=False; cut=111970..112072; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=1; cluster_weight=559;
|
||||
taaggtcacggtgagactagccg-------------------------------------
|
||||
----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_020365_LCS count=1; cluster_center=False; cut=133176..133278; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacgtcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_010548_LCS count=1; cluster_center=False; cut=100631..100732; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.902913; Strand=0; cluster_weight=559;
|
||||
taaggtcatggcgagacgagccg-------------------------------------
|
||||
----------tttattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatcctaagagaccggaagatttgaac-
|
||||
>NC_013086_LCS count=1; cluster_center=False; cut=137008..137110; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
tgaggtcacggcaagatgagccg-------------------------------------
|
||||
----------tttatcata---acgataggtgccaggtggaagtgcagtcatgtacg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_006861_LCS count=1; cluster_center=False; cut=143527..143629; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaagtggaaatacagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccaagagatttgaacc
|
||||
>NC_003386_LCS count=1; cluster_center=False; cut=125420..125522; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttattatc---acgataggtgccaagtggaagtgcagtaatgtacg-ca
|
||||
gctgaggcatcctaacagaccgatggctttgaacc
|
||||
>NC_016471_LCS count=1; cluster_center=False; cut=70088..70189; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccaagagatttgaac-
|
||||
>NC_010359_LCS count=1; cluster_center=False; cut=100778..100879; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.923077; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaggtggaagtgcagtgatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_020372_LCS count=1; cluster_center=False; cut=142338..142439; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.961165; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagatttgaac-
|
||||
>NC_014582_LCS count=1; cluster_center=False; cut=127077..127178; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccagtagacttgaac-
|
||||
>NC_024421_LCS count=1; cluster_center=False; cut=132893..132994; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_018114_LCS count=1; cluster_center=False; cut=120740..120842; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.952381; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaacc
|
||||
>NC_026847_LCS count=1; cluster_center=False; cut=142523..142622; seq_length=100; cluster=NC_000932_LCS; cluster_score=0.932039; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgcaagacttga---
|
||||
>NC_023120_LCS count=1; cluster_center=False; cut=107871..107972; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggtgagactagccg-------------------------------------
|
||||
----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_014874_LCS count=1; cluster_center=False; cut=41650..41752; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggttagacgagccg-------------------------------------
|
||||
----------tttattatt---atgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgaggcatactaacagaccgagagattttaacc
|
||||
>NC_011942_LCS count=1; cluster_center=False; cut=39883..39972; seq_length=90; cluster=NC_000932_LCS; cluster_score=0.8; Strand=0; cluster_weight=559;
|
||||
-------------agacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
>NC_016065_LCS count=1; cluster_center=False; cut=58742..58843; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.803738; Strand=0; cluster_weight=559;
|
||||
agaggtcttggcgagactagcca-------------------------------------
|
||||
----------gcgattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgagacatcctaagagaccaaaagatttgaac-
|
||||
>NC_022136_LCS count=1; cluster_center=False; cut=152638..152740; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.932039; Strand=1; cluster_weight=559;
|
||||
caaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccggaagatttgaac-
|
||||
>NC_014063_LCS count=1; cluster_center=False; cut=89893..89996; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
caaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgagtcatcctaacagaccgatagacttgaac-
|
||||
>NC_023121_LCS count=1; cluster_center=False; cut=57558..57654; seq_length=97; cluster=NC_000932_LCS; cluster_score=0.84466; Strand=0; cluster_weight=559;
|
||||
-caggtcacggcgagacgagccg-------------------------------------
|
||||
----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
>NC_021110_LCS count=1; cluster_center=False; cut=105447..105548; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.87619; Strand=0; cluster_weight=559;
|
||||
cgaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcag----acgataggtgttaagtgaaagtacagtgatgtatg-ca
|
||||
gccaaggcatcctaacagaccga-agatttgaacc
|
||||
>NC_016063_LCS count=1; cluster_center=False; cut=106726..106827; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
cgaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcag----acgataggtgttaagtgaaagtgcagtgatgtatg-ca
|
||||
gccaaggcatcctaacagaccga-agatttgaacc
|
||||
>NC_025642_LCS count=1; cluster_center=False; cut=69137..69239; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagcca-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccggtagacttgaac-
|
||||
>NC_026202_LCS count=1; cluster_center=False; cut=129378..129480; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_009266_LCS count=1; cluster_center=False; cut=130502..130604; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_002202_LCS count=1; cluster_center=False; cut=128763..128865; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagacccacagacttgaac-
|
||||
>NC_025554_LCS count=1; cluster_center=False; cut=135213..135315; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgtagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_021111_LCS count=1; cluster_center=False; cut=32758..32860; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccggtagacttgaac-
|
||||
>NC_023359_LCS count=1; cluster_center=False; cut=127655..127757; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_010776_LCS count=1; cluster_center=False; cut=136579..136681; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaggtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_024635_LCS count=1; cluster_center=False; cut=108314..108416; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=1; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---ataataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_025907_LCS count=1; cluster_center=False; cut=127320..127422; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951456; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccacaagacttgaac-
|
||||
>NC_008336_LCS count=1; cluster_center=False; cut=133098..133200; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.961165; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttattatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgacagacttgaac-
|
||||
>NC_022457_LCS count=1; cluster_center=False; cut=131133..131235; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgccagacttgaac-
|
||||
>NC_023259_LCS count=1; cluster_center=False; cut=137002..137104; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_025909_LCS count=1; cluster_center=False; cut=127251..127354; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.971154; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_024038_LCS count=1; cluster_center=False; cut=106484..106587; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=1; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aacgataggtgtcaggtggaagtgcagtaatgtacg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_014057_LCS count=1; cluster_center=False; cut=42962..43065; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtacagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_002694_LCS count=1; cluster_center=False; cut=127517..127620; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.980769; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_010433_LCS_CMP complemented=True; count=19; cluster_center=True; seq_length=103; cluster=NC_010433_LCS; cluster_score=1.0; cluster_weight=28;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac
|
||||
>NC_001666_LCS_CMP complemented=True; count=4; cluster_center=False; seq_length=95; cluster=NC_010433_LCS; cluster_score=0.847619; cluster_weight=28;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaac-gaacgaacgatttgaac
|
||||
>NC_013991_LCS_CMP complemented=True; count=2; cluster_center=False; seq_length=103; cluster=NC_010433_LCS; cluster_score=0.961538; cluster_weight=28;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac
|
||||
>NC_024168_LCS_CMP complemented=True; count=1; cluster_center=False; cut=129161..129258; seq_length=98; cluster=NC_010433_LCS; cluster_score=0.826923; Strand=1; cluster_weight=28;
|
||||
--aggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttt---ag---acaataggtgccaggtggaagcgcagtaatgtgtg-ca
|
||||
gccgaggcatcctaacagaccgagaggtttgaac
|
||||
>NC_023356_LCS_CMP complemented=True; count=1; cluster_center=False; cut=79931..80033; seq_length=103; cluster=NC_010433_LCS; cluster_score=0.961165; Strand=0; cluster_weight=28;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagatttgaac
|
||||
>NC_013707_LCS_CMP complemented=True; count=1; cluster_center=False; cut=132910..133011; seq_length=102; cluster=NC_010433_LCS; cluster_score=0.990291; Strand=1; cluster_weight=28;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaa-
|
||||
>NC_021372_LCS count=3; cluster_center=True; seq_length=104; cluster=NC_021372_LCS; cluster_score=1.0; Strand=0; cluster_weight=3;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttt----------aaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacgaac-gaacgatttgaac
|
||||
>NC_007578_LCS count=1; cluster_center=True; cut=129597..129859; seq_length=263; cluster=NC_007578_LCS; cluster_score=1.0; Strand=0; cluster_weight=1;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaacc
|
||||
>NC_008454_LCS count=1; cluster_center=True; cut=197495..197626; seq_length=132; cluster=NC_008454_LCS; cluster_score=1.0; Strand=1; cluster_weight=1;
|
||||
gaaggtcacggcgagacgagccg------------------tttatcatattactcaatt
|
||||
gatcattacgtttatcatt---acgataggtgttaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgttagacttgaac
|
||||
>NC_014569_LCS count=1; cluster_center=True; cut=102326..102478; seq_length=153; cluster=NC_014569_LCS; cluster_score=1.0; Strand=0; cluster_weight=1;
|
||||
gaaggtcacggcgagacgagccgtttgttttagagtgtcaaagtcttgagaattcaggcg
|
||||
cggcccgtcctttagagcaaaacaaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac
|
||||
>NC_026448_LCS count=1; cluster_center=True; cut=12936..13042; seq_length=107; cluster=NC_026448_LCS; cluster_score=1.0; Strand=0; cluster_weight=1;
|
||||
taaggtcgcggcgagatgatccg-------------------------------------
|
||||
----------ttgatagtgactatgataggtactaagtgtaaatgcagcgatgtatgtta
|
||||
gcttaggtatcctaaaagaccgatttatttgaac
|
||||
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
Vendored
BIN
Binary file not shown.
Executable
+50
@@ -0,0 +1,50 @@
|
||||
#!/bin/bash
|
||||
#
|
||||
|
||||
|
||||
awk 'function printfasta(seq) { \
|
||||
seqlen=length(seq); \
|
||||
for (i=1; i <= seqlen; i+=60) \
|
||||
print substr(seq,i,60); \
|
||||
} \
|
||||
function comp(seq) { \
|
||||
"echo "seq" | tr acgtACGT tgcaTGCA " | getline res; \
|
||||
close("echo "seq" | tr acgtACGT tgcaTGCA "); \
|
||||
return res; \
|
||||
} \
|
||||
function rev(seq) { \
|
||||
"echo "seq" | rev " | getline res; \
|
||||
close("echo "seq" | rev "); \
|
||||
return res; \
|
||||
} \
|
||||
function revcomp(seq) { \
|
||||
res=rev(comp(seq)); \
|
||||
return res; \
|
||||
} \
|
||||
\
|
||||
/^LOCUS / {AC=$2; sequence=""; seqon=0; FROM="";TO=""} \
|
||||
/^ rRNA / {LOCUS=$2; STRAND=1} \
|
||||
/^ rRNA / && /complement/ {STRAND=0; \
|
||||
sub("complement\\(","",LOCUS); \
|
||||
sub("\\)","",LOCUS); \
|
||||
} \
|
||||
/16S/ {split(LOCUS,POS,"."); \
|
||||
FROM=POS[1]; \
|
||||
TO=POS[3]; \
|
||||
LENGTH=TO-FROM+1 \
|
||||
} \
|
||||
/^ORIGIN/ {seqon=1} \
|
||||
/^ *[1-9][0-9]* [a-z ]+$/ && seqon {seq=$2 $3 $4 $5 $6 $7; \
|
||||
gsub("[^acgt]","n",seq);\
|
||||
sequence=sequence seq \
|
||||
} \
|
||||
/^\/\// && FROM \
|
||||
{print ">"AC"_16S Strand="STRAND";", \
|
||||
"cut="FROM".."TO";", \
|
||||
"seq_length="LENGTH";"; \
|
||||
SS=substr(sequence,FROM,LENGTH); \
|
||||
if (! STRAND) \
|
||||
SS=revcomp(SS); \
|
||||
printfasta(SS); \
|
||||
} \
|
||||
' $*
|
||||
Executable
+50
@@ -0,0 +1,50 @@
|
||||
#!/bin/bash
|
||||
#
|
||||
|
||||
|
||||
awk 'function printfasta(seq) { \
|
||||
seqlen=length(seq); \
|
||||
for (i=1; i <= seqlen; i+=60) \
|
||||
print substr(seq,i,60); \
|
||||
} \
|
||||
function comp(seq) { \
|
||||
"echo "seq" | tr acgtACGT tgcaTGCA " | getline res; \
|
||||
close("echo "seq" | tr acgtACGT tgcaTGCA "); \
|
||||
return res; \
|
||||
} \
|
||||
function rev(seq) { \
|
||||
"echo "seq" | rev " | getline res; \
|
||||
close("echo "seq" | rev "); \
|
||||
return res; \
|
||||
} \
|
||||
function revcomp(seq) { \
|
||||
res=rev(comp(seq)); \
|
||||
return res; \
|
||||
} \
|
||||
\
|
||||
/^LOCUS / {AC=$2; sequence=""; seqon=0; FROM="";TO=""} \
|
||||
/^ rRNA / {LOCUS=$2; STRAND=1} \
|
||||
/^ rRNA / && /complement/ {STRAND=0; \
|
||||
sub("complement\\(","",LOCUS); \
|
||||
sub("\\)","",LOCUS); \
|
||||
} \
|
||||
/4.5S/ {split(LOCUS,POS,"."); \
|
||||
FROM=POS[1]; \
|
||||
TO=POS[3]; \
|
||||
LENGTH=TO-FROM+1 \
|
||||
} \
|
||||
/^ORIGIN/ {seqon=1} \
|
||||
/^ *[1-9][0-9]* [a-z ]+$/ && seqon {seq=$2 $3 $4 $5 $6 $7; \
|
||||
gsub("[^acgt]","n",seq);\
|
||||
sequence=sequence seq \
|
||||
} \
|
||||
/^\/\// && FROM \
|
||||
{print ">"AC"_4.5S Strand="STRAND";", \
|
||||
"cut="FROM".."TO";", \
|
||||
"seq_length="LENGTH";"; \
|
||||
SS=substr(sequence,FROM,LENGTH); \
|
||||
if (! STRAND) \
|
||||
SS=revcomp(SS); \
|
||||
printfasta(SS); \
|
||||
} \
|
||||
' $*
|
||||
File renamed without changes.
File renamed without changes.
Vendored
BIN
Binary file not shown.
Executable
+20
@@ -0,0 +1,20 @@
|
||||
#!/bin/csh
|
||||
#
|
||||
# check if port is installed
|
||||
#
|
||||
set ORG_HOME = `dirname $0`/..
|
||||
|
||||
set PORTNAME = `$ORG_HOME/config/guess_port`
|
||||
|
||||
if (-f $ORG_HOME/ports/$PORTNAME/bin/exonerate) then
|
||||
echo "+ port $PORTNAME is correctly installed"
|
||||
exit 0
|
||||
endif
|
||||
|
||||
echo "! port $PORTNAME not installed"
|
||||
echo "! Please read README.txt for proper installation"
|
||||
|
||||
exit 1
|
||||
|
||||
|
||||
|
||||
Executable
+19
@@ -0,0 +1,19 @@
|
||||
#!/bin/csh
|
||||
#
|
||||
# a sample script to show how to retrieve proper path for port
|
||||
#
|
||||
|
||||
set ORG_HOME = `dirname $0`/..
|
||||
|
||||
set PORTNAME = `$ORG_HOME/config/guess_port`
|
||||
|
||||
set path = ($path $ORG_HOME/ports/$PORTNAME/bin)
|
||||
|
||||
#
|
||||
|
||||
which aragorn
|
||||
|
||||
exit 0
|
||||
|
||||
|
||||
|
||||
Executable
+33
@@ -0,0 +1,33 @@
|
||||
# ---------------------------------------------------------------
|
||||
# $Id: Makefile 1825 2013-02-26 09:39:47Z viari $
|
||||
# ---------------------------------------------------------------
|
||||
# @file: Makefile
|
||||
# @desc: makefile for src
|
||||
#
|
||||
# @history:
|
||||
# @+ <Gloup> : Mar 92 : first draft
|
||||
# @+ <Gloup> : Jul 93 : revised version
|
||||
# @+ <Gloup> : Feb 01 : Adapted to LXware
|
||||
#
|
||||
# @note: should be processed with gnu compatible make
|
||||
# @note: helixware_compatible
|
||||
#
|
||||
# @end:
|
||||
# ---------------------------------------------------------------
|
||||
#
|
||||
include ../config/auto.conf
|
||||
|
||||
DIRS = exonerate \
|
||||
kimono \
|
||||
prokov \
|
||||
sequtils \
|
||||
aragorn \
|
||||
ncbiblast
|
||||
|
||||
include ../config/targets/propagate.targ
|
||||
|
||||
include ../config/targets/help.targ
|
||||
|
||||
portclean::
|
||||
$(MAKE) ACTION=$@ _action
|
||||
(! test -d $(PRTDIR)) || \rm -r $(PRTDIR)
|
||||
@@ -0,0 +1,70 @@
|
||||
#
|
||||
# ------------------------------------------
|
||||
# ORG.Annot - Organelle Annotator
|
||||
# version 1.0.0 - Sept 2015
|
||||
# ------------------------------------------
|
||||
#
|
||||
# this directory contains sources for tools used by ORG.Annot
|
||||
# this is only useful if you need to recompile binaries
|
||||
#
|
||||
# -------------------------
|
||||
# -0- Requirements
|
||||
# -------------------------
|
||||
#
|
||||
# gnu tar : version >= 1.15
|
||||
# gnu make : version >= 3.81
|
||||
# gcc and g++ : version >= 3.4.6
|
||||
#
|
||||
# note: valid versions of gnu tar and make are in _unix_tools_
|
||||
#
|
||||
#
|
||||
# -------------------------
|
||||
# -1- Checking configuration files
|
||||
# -------------------------
|
||||
#
|
||||
# issue:
|
||||
# $ config/guess_port
|
||||
#
|
||||
# if output is 'unknown <mach>:<sys>:<rel>'
|
||||
# then you should :
|
||||
# - add a port entry in guess_port for <mach>:<sys>:<rel>
|
||||
# - create a ports/<port>.conf configuration file
|
||||
# (the best is to start from another port file,
|
||||
# choose whatever looks closest)
|
||||
#
|
||||
# if output is something else (e.g. i386-darwin)
|
||||
# then the configuration files are already defined for your port
|
||||
#
|
||||
# -------------------------
|
||||
# -2- Compiling
|
||||
# -------------------------
|
||||
#
|
||||
# just run make from 'src':
|
||||
#
|
||||
# $ cd src
|
||||
# $ make
|
||||
#
|
||||
#
|
||||
# if everything runs fine, you may then issue:
|
||||
#
|
||||
# $ make clean
|
||||
#
|
||||
# to cleanup unecessary files
|
||||
#
|
||||
# at this point all binaries should be located in ports/<PORTNAME>/bin
|
||||
#
|
||||
# -------------------------
|
||||
# -3- Recompiling a port
|
||||
# -------------------------
|
||||
#
|
||||
# if you need to fully recompile a port
|
||||
#
|
||||
# $ cd src
|
||||
# $ make portclean
|
||||
# $ make
|
||||
# $ make clean
|
||||
#
|
||||
|
||||
|
||||
|
||||
|
||||
Binary file not shown.
Binary file not shown.
Executable
+29
@@ -0,0 +1,29 @@
|
||||
# ---------------------------------------------------------------
|
||||
# $Id: $
|
||||
# ---------------------------------------------------------------
|
||||
# @file: Makefile
|
||||
# @desc: makefile for aragorn
|
||||
#
|
||||
# @history:
|
||||
# @history:
|
||||
# @+ <Gloup> : Sep 12: Created
|
||||
#
|
||||
# @note: should be processed with gnu compatible make
|
||||
# @note: helixware_compatible
|
||||
#
|
||||
# @end:
|
||||
# ---------------------------------------------------------------
|
||||
#
|
||||
include ../../config/auto.conf
|
||||
|
||||
OSRC = aragorn1.2.36.c
|
||||
|
||||
PROGS = aragorn
|
||||
|
||||
include ../../config/targets/lxbin.targ
|
||||
include ../../config/targets/help.targ
|
||||
|
||||
INCDIR = .
|
||||
|
||||
aragorn: $(OBJ)
|
||||
$(CC) -o $@ $^ $(LDFLAGS) $(LDLIBS)
|
||||
@@ -0,0 +1,390 @@
|
||||
'\" t
|
||||
.\" Title: aragorn
|
||||
.\" Author: [see the "AUTHORS" section]
|
||||
.\" Generator: DocBook XSL Stylesheets v1.76.1 <http://docbook.sf.net/>
|
||||
.\" Date: 02/24/2013
|
||||
.\" Manual: \ \&
|
||||
.\" Source: \ \&
|
||||
.\" Language: English
|
||||
.\"
|
||||
.TH "ARAGORN" "1" "02/24/2013" "\ \&" "\ \&"
|
||||
.\" -----------------------------------------------------------------
|
||||
.\" * Define some portability stuff
|
||||
.\" -----------------------------------------------------------------
|
||||
.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
.\" http://bugs.debian.org/507673
|
||||
.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html
|
||||
.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
.ie \n(.g .ds Aq \(aq
|
||||
.el .ds Aq '
|
||||
.\" -----------------------------------------------------------------
|
||||
.\" * set default formatting
|
||||
.\" -----------------------------------------------------------------
|
||||
.\" disable hyphenation
|
||||
.nh
|
||||
.\" disable justification (adjust text to left margin only)
|
||||
.ad l
|
||||
.\" -----------------------------------------------------------------
|
||||
.\" * MAIN CONTENT STARTS HERE *
|
||||
.\" -----------------------------------------------------------------
|
||||
.SH "NAME"
|
||||
aragorn \- detect tRNA genes in nucleotide sequences
|
||||
.SH "SYNOPSIS"
|
||||
.sp
|
||||
\fBaragorn\fR [\fIOPTION\fR]\&... \fIFILE\fR
|
||||
.SH "OPTIONS"
|
||||
.PP
|
||||
\fB\-m\fR
|
||||
.RS 4
|
||||
Search for tmRNA genes\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-t\fR
|
||||
.RS 4
|
||||
Search for tRNA genes\&. By default, all are detected\&. If one of
|
||||
\fB\-m\fR
|
||||
or
|
||||
\fB\-t\fR
|
||||
is specified, then the other is not detected unless specified as well\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-mt\fR
|
||||
.RS 4
|
||||
Search for Metazoan mitochondrial tRNA genes\&. tRNA genes with introns not detected\&.
|
||||
\fB\-i\fR,
|
||||
\fB\-sr\fR
|
||||
switchs ignored\&. Composite Metazoan mitochondrial genetic code used\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-mtmam\fR
|
||||
.RS 4
|
||||
Search for Mammalian mitochondrial tRNA genes\&.
|
||||
\fB\-i\fR,
|
||||
\fB\-sr\fR
|
||||
switchs ignored\&.
|
||||
\fB\-tv\fR
|
||||
switch set\&. Mammalian mitochondrial genetic code used\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-mtx\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-mt\fR
|
||||
but low scoring tRNA genes are not reported\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-mtd\fR
|
||||
.RS 4
|
||||
Overlapping metazoan mitochondrial tRNA genes on opposite strands are reported\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gc\fR[\fInum\fR]
|
||||
.RS 4
|
||||
Use the GenBank transl_table = [\fInum\fR] genetic code\&. Individual modifications can be appended using
|
||||
\fI,BBB\fR=<aa> B = A,C,G, or T\&. <aa> is the three letter code for an amino\-acid\&. More than one modification can be specified\&. eg
|
||||
\fB\-gcvert\fR,aga=Trp,agg=Trp uses the Vertebrate Mitochondrial code and the codons AGA and AGG changed to Tryptophan\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcstd\fR
|
||||
.RS 4
|
||||
Use standard genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcmet\fR
|
||||
.RS 4
|
||||
Use composite Metazoan mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcvert\fR
|
||||
.RS 4
|
||||
Use Vertebrate mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcinvert\fR
|
||||
.RS 4
|
||||
Use Invertebrate mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcyeast\fR
|
||||
.RS 4
|
||||
Use Yeast mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcprot\fR
|
||||
.RS 4
|
||||
Use Mold/Protozoan/Coelenterate mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcciliate\fR
|
||||
.RS 4
|
||||
Use Ciliate genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcflatworm\fR
|
||||
.RS 4
|
||||
Use Echinoderm/Flatworm mitochondrial genetic code
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gceuplot\fR
|
||||
.RS 4
|
||||
Use Euplotid genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcbact\fR
|
||||
.RS 4
|
||||
Use Bacterial/Plant Chloroplast genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcaltyeast\fR
|
||||
.RS 4
|
||||
Use alternative Yeast genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcascid\fR
|
||||
.RS 4
|
||||
Use Ascidian Mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcaltflat\fR
|
||||
.RS 4
|
||||
Use alternative Flatworm Mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcblep\fR
|
||||
.RS 4
|
||||
Use Blepharisma genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcchloroph\fR
|
||||
.RS 4
|
||||
Use Chlorophycean Mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gctrem\fR
|
||||
.RS 4
|
||||
Use Trematode Mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcscen\fR
|
||||
.RS 4
|
||||
Use Scenedesmus obliquus Mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-gcthraust\fR
|
||||
.RS 4
|
||||
Use Thraustochytrium Mitochondrial genetic code\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-tv\fR
|
||||
.RS 4
|
||||
Do not search for mitochondrial TV replacement loop tRNA genes\&. Only relevant if
|
||||
\fB\-mt\fR
|
||||
used\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-c7\fR
|
||||
.RS 4
|
||||
Search for tRNA genes with 7 base C\-loops only\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-i\fR
|
||||
.RS 4
|
||||
Search for tRNA genes with introns in anticodon loop with maximum length 3000 bases\&. Minimum intron length is 0 bases\&. Ignored if
|
||||
\fB\-m\fR
|
||||
is specified\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-i\fR[\fImax\fR]
|
||||
.RS 4
|
||||
Search for tRNA genes with introns in anticodon loop with maximum length [\fImax\fR] bases\&. Minimum intron length is 0 bases\&. Ignored if
|
||||
\fB\-m\fR
|
||||
is specified\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-i\fR[\fImin\fR],[\fImax\fR]
|
||||
.RS 4
|
||||
Search for tRNA genes with introns in anticodon loop with maximum length [\fImax\fR] bases, and minimum length [\fImin\fR] bases\&. Ignored if
|
||||
\fB\-m\fR
|
||||
is specified\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-io\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-i\fR, but allow tRNA genes with long introns to overlap shorter tRNA genes\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-if\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-i\fR, but fix intron between positions 37 and 38 on C\-loop (one base after anticodon)\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-ifo\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-if\fR
|
||||
and
|
||||
\fB\-io\fR
|
||||
combined\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-ir\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-i\fR, but report tRNA genes with minimum length [\fImin\fR] bases rather than search for tRNA genes with minimum length [\fImin\fR] bases\&. With this switch, [\fImin\fR] acts as an output filter, minimum intron length for searching is still 0 bases\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-c\fR
|
||||
.RS 4
|
||||
Assume that each sequence has a circular topology\&. Search wraps around each end\&. Default setting\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-l\fR
|
||||
.RS 4
|
||||
Assume that each sequence has a linear topology\&. Search does not wrap\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-d\fR
|
||||
.RS 4
|
||||
Double\&. Search both strands of each sequence\&. Default setting\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-s\fR or \fB\-s+\fR
|
||||
.RS 4
|
||||
Single\&. Do not search the complementary (antisense) strand of each sequence\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-sc\fR or \fB\-s\-\fR
|
||||
.RS 4
|
||||
Single complementary\&. Do not search the sense strand of each sequence\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-ps\fR
|
||||
.RS 4
|
||||
Lower scoring thresholds to 95% of default levels\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-ps\fR[\fInum\fR]
|
||||
.RS 4
|
||||
Change scoring thresholds to [\fInum\fR] percent of default levels\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-rp\fR
|
||||
.RS 4
|
||||
Flag possible pseudogenes (score < 100 or tRNA anticodon loop <> 7 bases long)\&. Note that genes with score < 100 will not be detected or flagged if scoring thresholds are not also changed to below 100% (see \-ps switch)\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-seq\fR
|
||||
.RS 4
|
||||
Print out primary sequence\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-br\fR
|
||||
.RS 4
|
||||
Show secondary structure of tRNA gene primary sequence using round brackets\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-fasta\fR
|
||||
.RS 4
|
||||
Print out primary sequence in fasta format\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-fo\fR
|
||||
.RS 4
|
||||
Print out primary sequence in fasta format only (no secondary structure)\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-fon\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-fo\fR, with sequence and gene numbering in header\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-fos\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-fo\fR, with no spaces in header\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-fons\fR
|
||||
.RS 4
|
||||
Same as
|
||||
\fB\-fo\fR, with sequence and gene numbering, but no spaces\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-w\fR
|
||||
.RS 4
|
||||
Print out in Batch mode\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-ss\fR
|
||||
.RS 4
|
||||
Use the stricter canonical 1\-2 bp spacer1 and 1 bp spacer2\&. Ignored if
|
||||
\fB\-mt\fR
|
||||
set\&. Default is to allow 3 bp spacer1 and 0\-2 bp spacer2, which may degrade selectivity\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-v\fR
|
||||
.RS 4
|
||||
Verbose\&. Prints out information during search to STDERR\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-a\fR
|
||||
.RS 4
|
||||
Print out tRNA domain for tmRNA genes\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-a7\fR
|
||||
.RS 4
|
||||
Restrict tRNA astem length to a maximum of 7 bases
|
||||
.RE
|
||||
.PP
|
||||
\fB\-aa\fR
|
||||
.RS 4
|
||||
Display message if predicted iso\-acceptor species does not match species in sequence name (if present)\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-j\fR
|
||||
.RS 4
|
||||
Display 4\-base sequence on 3\*(Aq end of astem regardless of predicted amino\-acyl acceptor length\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-jr\fR
|
||||
.RS 4
|
||||
Allow some divergence of 3\*(Aq amino\-acyl acceptor sequence from NCCA\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-jr4\fR
|
||||
.RS 4
|
||||
Allow some divergence of 3\*(Aq amino\-acyl acceptor sequence from NCCA, and display 4 bases\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-q\fR
|
||||
.RS 4
|
||||
Dont print configuration line (which switchs and files were used)\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-rn\fR
|
||||
.RS 4
|
||||
Repeat sequence name before summary information\&.
|
||||
.RE
|
||||
.PP
|
||||
\fB\-O\fR [\fIoutfile\fR]
|
||||
.RS 4
|
||||
Print output to
|
||||
\fI\&. If [\*(Aqoutfile\fR] already exists, it is overwritten\&. By default all output goes to stdout\&.
|
||||
.RE
|
||||
.SH "DESCRIPTION"
|
||||
.sp
|
||||
aragorn detects tRNA, mtRNA, and tmRNA genes\&. A minimum requirement is at least a 32 bit compiler architecture (variable types int and unsigned int are at least 4 bytes long)\&.
|
||||
.sp
|
||||
[\fIFILE\fR] is assumed to contain one or more sequences in FASTA format\&. Results of the search are printed to STDOUT\&. All switches are optional and case\-insensitive\&. Unless \-i is specified, tRNA genes containing introns are not detected\&.
|
||||
.SH "AUTHORS"
|
||||
.sp
|
||||
Bjorn Canback <bcanback@acgt\&.se>, Dean Laslett <gaiaquark@gmail\&.com>
|
||||
.SH "REFERENCES"
|
||||
.sp
|
||||
Laslett, D\&. and Canback, B\&. (2004) ARAGORN, a program for the detection of transfer RNA and transfer\-messenger RNA genes in nucleotide sequences Nucleic Acids Research, 32;11\-16
|
||||
.sp
|
||||
Laslett, D\&. and Canback, B\&. (2008) ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences Bioinformatics, 24(2); 172\-175\&.
|
||||
File diff suppressed because it is too large.
Load diff
Executable
+14
@@ -0,0 +1,14 @@
|
||||
#!/bin/csh -f
|
||||
|
||||
set cfg = `find . -type d -name config -print | grep -v ncbi`
|
||||
|
||||
foreach cf ($cfg)
|
||||
echo $cf
|
||||
\rm -r $cf
|
||||
cp -r ../config $cf
|
||||
end
|
||||
|
||||
|
||||
exit 0
|
||||
|
||||
|
||||
Vendored
BIN
Binary file not shown.
@@ -0,0 +1,24 @@
|
||||
# ---------------------------------------------------------------
|
||||
# $Id: $
|
||||
# ---------------------------------------------------------------
|
||||
# @file: Makefile
|
||||
# @desc: makefile for package exonerate
|
||||
#
|
||||
# @history:
|
||||
# @+ <Gloup> : Sept 15 : Adapted to ORG.Annot
|
||||
#
|
||||
# @note: should be processed with gnu compatible make
|
||||
# @note: helixware_compatible
|
||||
#
|
||||
# @end:
|
||||
# ---------------------------------------------------------------
|
||||
#
|
||||
|
||||
include ../../config/auto.conf
|
||||
|
||||
PKG = exonerate-2.2.0
|
||||
|
||||
include $(CFGDIR)targets/package.targ
|
||||
|
||||
include $(CFGDIR)targets/help.targ
|
||||
|
||||
Binary file not shown.
Binary file not shown.
Executable
+33
@@ -0,0 +1,33 @@
|
||||
# ---------------------------------------------------------------
|
||||
# $Id: $
|
||||
# ---------------------------------------------------------------
|
||||
# @file: Makefile
|
||||
# @desc: makefile for lxpack
|
||||
#
|
||||
# @history:
|
||||
# @history:
|
||||
# @+ <Gloup> : Apr 97 : Created
|
||||
# @+ <Gloup> : Mar 02 : Updated for LXxware
|
||||
#
|
||||
# @note: should be processed with gnu compatible make
|
||||
# @note: helixware_compatible
|
||||
#
|
||||
# @end:
|
||||
# ---------------------------------------------------------------
|
||||
#
|
||||
include ../../config/auto.conf
|
||||
|
||||
DIRS = lxpack
|
||||
|
||||
include ../../config/targets/propagate.targ
|
||||
|
||||
include ../../config/targets/help.targ
|
||||
|
||||
all::
|
||||
$(MAKE) ACTION=$@ _action
|
||||
test -d $(PRTDIR) || mkdir $(PRTDIR)
|
||||
test -d $(BINDIR) || mkdir $(BINDIR)
|
||||
\cp -f lxpack/ports/$(PORTNAME)/bin/* $(BINDIR)
|
||||
|
||||
clean::
|
||||
$(MAKE) -C lxpack portclean
|
||||
Executable
+29
@@ -0,0 +1,29 @@
|
||||
# ---------------------------------------------------------------
|
||||
# $Id: $
|
||||
# ---------------------------------------------------------------
|
||||
# @file: Makefile
|
||||
# @desc: makefile for kimono
|
||||
#
|
||||
# @history:
|
||||
# @history:
|
||||
# @+ <Gloup> : Apr 97 : Created
|
||||
# @+ <Gloup> : Mar 02 : Updated for LXxware
|
||||
#
|
||||
# @note: should be processed with gnu compatible make
|
||||
# @note: helixware_compatible
|
||||
#
|
||||
# @end:
|
||||
# ---------------------------------------------------------------
|
||||
#
|
||||
include ./config/auto.conf
|
||||
|
||||
DIRS = src \
|
||||
tests
|
||||
|
||||
include ./config/targets/propagate.targ
|
||||
|
||||
include ./config/targets/help.targ
|
||||
|
||||
portclean::
|
||||
$(MAKE) ACTION=$@ _action
|
||||
(! test -d $(PRTDIR)) || \rm -r $(PRTDIR)
|
||||
Executable
+51
@@ -0,0 +1,51 @@
|
||||
|
||||
$Id: README.txt 1825 2013-02-26 09:39:47Z viari $
|
||||
|
||||
This directory contains Makefile machine specific configuration files
|
||||
(and default targets to help you writing Makefile's)
|
||||
|
||||
These headers should be used with GNU make or compatible
|
||||
|
||||
#
|
||||
# portname
|
||||
#
|
||||
|
||||
To check your port, issue :
|
||||
|
||||
./guess_port
|
||||
|
||||
if output is 'unknown <mach>:<sys>:<rel>' then you should :
|
||||
- add a port entry in guess_port for <mach>:<sys>:<rel>
|
||||
- create a ports/<port>.conf configuration file
|
||||
(the best is to start from another port file,
|
||||
choose whatever looks closest)
|
||||
|
||||
#
|
||||
# configuration flags
|
||||
#
|
||||
|
||||
auto.conf : the main configuration file :
|
||||
- determine the machine port thru 'guess_port' shell
|
||||
- include 'default.conf' file
|
||||
- include the machine specific 'ports/<port>.conf' file
|
||||
|
||||
default.conf : default configuration (included by 'auto.conf')
|
||||
|
||||
ports/<port>.conf : machine specific configuration (included by 'auto.conf')
|
||||
|
||||
#
|
||||
# utility targets
|
||||
#
|
||||
|
||||
targets/help.targ : target for standard help
|
||||
|
||||
targets/propagate.targ : target for propagating targets to subdirectories
|
||||
|
||||
targets/package.targ : default targets for standard package with 'configure'
|
||||
|
||||
targets/empty.targ : default empty targets (defined as double colon rules)
|
||||
|
||||
targets/lxbin.targ : default make targets for standard lx binary (without libraries)
|
||||
|
||||
targets/debug.targ : target to print debug information (for dev.)
|
||||
|
||||
@@ -0,0 +1,54 @@
|
||||
#
|
||||
# $Id: auto.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# auto.conf
|
||||
# auto configuration file using guess_port
|
||||
#
|
||||
# this file is included in Makefile
|
||||
#
|
||||
|
||||
#
|
||||
# default shell for gnu-make
|
||||
#
|
||||
|
||||
SHELL = /bin/sh
|
||||
|
||||
#
|
||||
# CFGDIR : location of config files = this file directory location
|
||||
#
|
||||
# CFGPRT : port name (as returned by guess_port)
|
||||
#
|
||||
|
||||
# because builtin 'lastword' is missing in gnu-make 3.80
|
||||
|
||||
lastword = $(word $(words $1), $1)
|
||||
|
||||
CFGDIR := $(dir $(call lastword, $(MAKEFILE_LIST)))
|
||||
|
||||
CFGPRT := $(shell $(CFGDIR)guess_port)
|
||||
|
||||
# check if port is correctly defined
|
||||
|
||||
ifneq (1, $(words $(CFGPRT)))
|
||||
entry := $(call lastword, $(CFGPRT))
|
||||
$(error port is undefined - add entry for "$(entry)" in configuration file -)
|
||||
endif
|
||||
|
||||
#
|
||||
# PORTNAME : port name to use : default is CFGPRT but may be futher modified
|
||||
# by machine specific configuration
|
||||
|
||||
PORTNAME = $(CFGPRT)
|
||||
|
||||
#
|
||||
# default configuration
|
||||
# may be overriden by machine dependant definitions below
|
||||
#
|
||||
|
||||
include $(CFGDIR)default.conf
|
||||
|
||||
#
|
||||
# machine dependant definitions
|
||||
#
|
||||
|
||||
include $(CFGDIR)ports/$(CFGPRT).conf
|
||||
@@ -0,0 +1,124 @@
|
||||
#
|
||||
# $Id: default.conf 2007 2013-12-03 14:21:39Z viari $
|
||||
#
|
||||
# default.conf
|
||||
# default configuration flags
|
||||
# maybe further redefined by machine specific configuration
|
||||
#
|
||||
# this file is included by auto.conf
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF =
|
||||
|
||||
#
|
||||
# CC : (ansi C) compiler command to use
|
||||
# you may add some machine specific flags (like -arch ...)
|
||||
# in the <machine>.conf configuration file
|
||||
#
|
||||
|
||||
CC = gcc
|
||||
|
||||
#
|
||||
# default compiler optimizer flag
|
||||
#
|
||||
|
||||
OPTIM = -O
|
||||
|
||||
#
|
||||
# CC_LIBS : additionnal machine specific $(CC) libraries
|
||||
# like '-lC' on some machines
|
||||
#
|
||||
|
||||
CC_LIBS =
|
||||
|
||||
#
|
||||
# MALLOC_LIBS : machine specific malloc librairies
|
||||
# like '-lmalloc' on SGI
|
||||
#
|
||||
|
||||
MALLOC_LIBS =
|
||||
|
||||
#
|
||||
# MATH_LIBS : machine specific math librairies
|
||||
# like '-lm' on Solaris
|
||||
#
|
||||
|
||||
MATH_LIBS =
|
||||
|
||||
#
|
||||
# LINT : looks like LINT command does not exist anymore
|
||||
# here is a rough replacement
|
||||
#
|
||||
|
||||
LINT = gcc -S -Wall -Wno-format-y2k -W -Wstrict-prototypes \
|
||||
-Wmissing-prototypes -Wpointer-arith -Wreturn-type \
|
||||
-Wcast-qual -Wwrite-strings -Wswitch -Wshadow \
|
||||
-Wcast-align -Wbad-function-cast -Wchar-subscripts \
|
||||
-Winline -Wnested-externs -Wredundant-decls
|
||||
|
||||
# ------------------------------------
|
||||
# General system commands
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# AR : AR archive command
|
||||
# ARFLAGS : $(AR) archiving flags
|
||||
# ARXFLAGS : $(AR) extraction flags
|
||||
#
|
||||
|
||||
AR = ar
|
||||
ARFLAGS = rcv
|
||||
ARXFLAGS = xv
|
||||
|
||||
#
|
||||
# RANLIB : ranlib command
|
||||
#
|
||||
|
||||
RANLIB = ranlib
|
||||
|
||||
#
|
||||
# DIFF : diff command
|
||||
#
|
||||
|
||||
DIFF = diff
|
||||
|
||||
#
|
||||
# TAR : tar command
|
||||
#
|
||||
|
||||
TAR = tar
|
||||
|
||||
# ------------------------------------
|
||||
# Default locations
|
||||
# ------------------------------------
|
||||
#
|
||||
# PRTDIR : port dependent files location (libraries and binaries)
|
||||
# BINDIR : port binaries
|
||||
# LIBDIR : port libraries
|
||||
#
|
||||
|
||||
PRTDIR = $(CFGDIR)../ports/$(PORTNAME)
|
||||
|
||||
BINDIR = $(PRTDIR)/bin
|
||||
|
||||
LIBDIR = $(PRTDIR)/lib
|
||||
|
||||
# ------------------------------------
|
||||
# default gmake variable in implicit rules
|
||||
# ------------------------------------
|
||||
|
||||
CFLAGS = $(OPTIM) $(MACHDEF) -I$(INCDIR)
|
||||
|
||||
LDFLAGS = -L$(LIBDIR) -L.
|
||||
|
||||
LDLIBS = $(LIBS) $(MALLOC_LIBS) $(MATH_LIBS) $(CC_LIBS)
|
||||
|
||||
LINTFLAGS = $(MACHDEF) -I$(INCDIR)
|
||||
Executable
+33
@@ -0,0 +1,33 @@
|
||||
#! /bin/sh
|
||||
#
|
||||
# $Id: guess_port 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# @file: guess_port
|
||||
# @desc: attempt to guess the portname
|
||||
# @usage: guess_port
|
||||
#
|
||||
# @history:
|
||||
# @+ <Gloup> Nov. 2000 first draft adapted from GNU config.guess
|
||||
# @+ <Gloup> Feb. 2010 moved to sh
|
||||
#
|
||||
|
||||
mach=`uname -m`
|
||||
syst=`uname -s`
|
||||
rels=`uname -r`
|
||||
|
||||
case ${mach}:${syst}:${rels} in
|
||||
|
||||
alpha:OSF1:* ) echo alpha-osf1;;
|
||||
sun4*:SunOS:5.* ) echo sparc-solaris;;
|
||||
i86pc:SunOS:5.* ) echo i386-solaris;;
|
||||
sun4*:SunOS:* ) echo sparc-sunos;;
|
||||
Power*:Darwin:* ) echo ppc-darwin;;
|
||||
i*86:Linux:* ) echo i386-linux;;
|
||||
x*86*:Linux:* ) echo i386-linux;;
|
||||
i*86:Darwin:* ) echo i386-darwin;;
|
||||
IP*:IRIX*:* ) echo mips-irix;;
|
||||
i*86:MINGW32*:* ) echo x86-mingw32;;
|
||||
|
||||
*) echo unknown ${mach}:${syst}:${rels}; exit 1;;
|
||||
esac
|
||||
exit 0
|
||||
@@ -0,0 +1,26 @@
|
||||
#
|
||||
# $Id: i386-darwin.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# i386-darwin.conf
|
||||
# configuration file for MacOS-X/Intel-Based/Darwin 1.2 with gcc compiler
|
||||
# this file is included in Makefile
|
||||
#
|
||||
# system (uname -srp) : Darwin 8.7.1 i386
|
||||
# compiler (cc --version) : i686-apple-darwin8-gcc-4.0.1
|
||||
#
|
||||
# check tags
|
||||
# @uname:uname -srp:Darwin 8.7.1 i386
|
||||
# @cc:cc --version:i686-apple-darwin8-gcc-4.0.1
|
||||
#
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_MACINTEL -DLITTLE_ENDIAN -DMACOSX
|
||||
|
||||
+32
@@ -0,0 +1,32 @@
|
||||
#
|
||||
# $Id: i386-linux.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# i386-linux.conf
|
||||
# configuration file for linux ix86 with GNU gcc compiler
|
||||
# this file is included in Makefile
|
||||
#
|
||||
# system (uname -srp) : Linux 2.2.14-5.0 unknown
|
||||
# compiler (gcc --version) : egcs-2.91.66
|
||||
#
|
||||
# check tags
|
||||
# @uname:uname -srp:Linux 2.2.14-5.0 unknown
|
||||
# @cc:cc --version:egcs-2.91.66
|
||||
#
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_LINUX -DLITTLE_ENDIAN
|
||||
|
||||
#
|
||||
# MATH_LIBS : machine specific math librairies
|
||||
#
|
||||
|
||||
MATH_LIBS = -lm
|
||||
|
||||
+32
@@ -0,0 +1,32 @@
|
||||
#
|
||||
# $Id: ppc-darwin.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# ppc-darwin.conf
|
||||
# configuration file for MacOS-X/Darwin 1.2 with native cc compiler
|
||||
# this file is included in Makefile
|
||||
#
|
||||
# system (uname -srp) : Darwin 1.2 powerpc
|
||||
# compiler (cc --version) : 2.7.2.1
|
||||
#
|
||||
# check tags
|
||||
# @uname:uname -srp:Darwin 1.2 powerpc
|
||||
# @cc:cc --version:2.7.2.1
|
||||
#
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_MACPPC -DBIG_ENDIAN
|
||||
|
||||
#
|
||||
# CC : name of (ansi C) compiler to use
|
||||
#
|
||||
|
||||
CC = cc -arch ppc
|
||||
|
||||
+31
@@ -0,0 +1,31 @@
|
||||
#
|
||||
# $Id: sparc-solaris.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# sparc-solaris.conf
|
||||
# configuration file for sparc solaris with GNU gcc compiler
|
||||
# this file is included in Makefile
|
||||
#
|
||||
# system (uname -srp) : SunOS 5.8 sparc
|
||||
# compiler (gcc --version) : 2.95.2
|
||||
#
|
||||
# check tags
|
||||
# @uname:uname -srp:SunOS 5.8 sparc
|
||||
# @cc:cc --version:2.95.2
|
||||
#
|
||||
#
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
|
||||
MACHDEF = -DLX_TARGET_SOLARIS -DBIG_ENDIAN
|
||||
|
||||
#
|
||||
# MATH_LIBS : machine specific math librairies
|
||||
#
|
||||
|
||||
MATH_LIBS = -lm
|
||||
@@ -0,0 +1,54 @@
|
||||
#
|
||||
# $Id: x86-mingw32.conf 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# x86-mingw32
|
||||
# configuration file for MinGW with GNU gcc compiler.
|
||||
#
|
||||
# this file is included in Makefile
|
||||
#
|
||||
#
|
||||
|
||||
#
|
||||
# rename PORTNAME safely since MinGW produce pure win32 executables
|
||||
# without dll's
|
||||
#
|
||||
|
||||
PORTNAME = x86-win32
|
||||
|
||||
# ------------------------------------
|
||||
# General compilation flags
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# CC_LIBS : additionnal machine specific $(CC) libraries
|
||||
#
|
||||
# libiberty is needed for some system extensions (like mkstemps)
|
||||
#
|
||||
|
||||
CC_LIBS = -liberty
|
||||
|
||||
#
|
||||
# MACHDEF : define machine and OS specific flags
|
||||
#
|
||||
# -DDLMALLOC : use dlmalloc instead of malloc (which does not have mallinfo)
|
||||
# -posix is a new replacement for several MinGW32 flags, including:
|
||||
# -D__USE_MINGW_ANSI_STDIO : mingw gcc flag to recognize the C99 "%zu" format
|
||||
#
|
||||
|
||||
MACHDEF = -posix -DLX_TARGET_WIN32 -DWIN_MINGW -DDLMALLOC -DLITTLE_ENDIAN
|
||||
|
||||
#
|
||||
# MATH_LIBS : machine specific math librairies
|
||||
#
|
||||
|
||||
MATH_LIBS = -lm
|
||||
|
||||
# ------------------------------------
|
||||
# General system commands
|
||||
# ------------------------------------
|
||||
|
||||
#
|
||||
# DIFF : diff command / should ignore cr on windows
|
||||
#
|
||||
|
||||
DIFF = diff --strip-trailing-cr
|
||||
@@ -0,0 +1,25 @@
|
||||
#
|
||||
# $Id: help.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# debug.targ
|
||||
#
|
||||
# target to print debug information (dev. only)
|
||||
#
|
||||
# it defines the following targets:
|
||||
#
|
||||
# debug :
|
||||
# print debug
|
||||
#
|
||||
# it requires auto.conf
|
||||
#
|
||||
|
||||
.PHONY: debug
|
||||
|
||||
debug::
|
||||
@echo "+ PORTNAME: $(PORTNAME)"
|
||||
@echo "+ CFGPRT: $(CFGPRT)"
|
||||
@echo "+ CFGDIR: $(CFGDIR)"
|
||||
@echo "+ PRTDIR: $(PRTDIR)"
|
||||
@echo "+ MACHDEF: $(MACHDEF)"
|
||||
|
||||
|
||||
@@ -0,0 +1,24 @@
|
||||
#
|
||||
# $Id: $
|
||||
#
|
||||
# epty.targ
|
||||
#
|
||||
# default empty targets (defined as double colon rules)
|
||||
#
|
||||
#
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all test clean portclean help
|
||||
|
||||
all::
|
||||
|
||||
test::
|
||||
|
||||
clean::
|
||||
|
||||
portclean:: clean
|
||||
|
||||
test::
|
||||
@@ -0,0 +1,23 @@
|
||||
#
|
||||
# $Id: help.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# help.targ
|
||||
#
|
||||
# default target to print help
|
||||
#
|
||||
# it defines the following targets:
|
||||
#
|
||||
# help :
|
||||
# print help
|
||||
#
|
||||
|
||||
.PHONY: help
|
||||
|
||||
help::
|
||||
@ echo "basic usage: make [<action>+]"
|
||||
@ echo "valid <action> :"
|
||||
@ echo " all : compile everything for current port [default target]"
|
||||
@ echo " clean : local cleanup"
|
||||
@ echo " portclean : cleanup distribution for current port"
|
||||
@ echo " test : run tests on current port"
|
||||
@ echo " help : print this help"
|
||||
@@ -0,0 +1,51 @@
|
||||
#
|
||||
# $Id: $
|
||||
#
|
||||
# lxbin.targ
|
||||
#
|
||||
# default make targets for standard lx binary
|
||||
#
|
||||
# you should define the 'PROGS' and 'OSRC' variables
|
||||
# and optionnaly 'LIBS' if binaries have to be linked with libraries
|
||||
#
|
||||
# note: if main source code for binary PROG is PROG.c, there is nothing to do,
|
||||
# else (e.g. if it involves several sources files) you should also add local
|
||||
# file dependencies. e.g under the form:
|
||||
#
|
||||
# mymain: $(OBJ) mymain_base.c mymain_help.c
|
||||
# $(CC) $(CFLAGS) -o $@ $^ $(LDFLAGS) $(LDLIBS)
|
||||
#
|
||||
#
|
||||
# 'auto.conf' should have been included
|
||||
#
|
||||
|
||||
OBJ = $(OSRC:.c=.o)
|
||||
|
||||
INCDIR = ../include
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all prelib install test clean portclean
|
||||
|
||||
all:: prelib $(PROGS) install
|
||||
@echo "+++++++++++ binaries $(PROGS) done"
|
||||
|
||||
prelib::
|
||||
test -d $(PRTDIR) || mkdir $(PRTDIR) # because some linker may complain
|
||||
test -d $(LIBDIR) || mkdir $(LIBDIR) # if -L$(LIBDIR) does not exist
|
||||
|
||||
install::
|
||||
test -d $(PRTDIR) || mkdir $(PRTDIR)
|
||||
test -d $(BINDIR) || mkdir $(BINDIR)
|
||||
-for f in $(PROGS) ; do \cp -f $$f $(BINDIR) ; done
|
||||
|
||||
test::
|
||||
|
||||
clean::
|
||||
-\rm -f *.o cvstatic* *% *.bak so_loc*
|
||||
-\rm -f $(PROGS)
|
||||
|
||||
portclean:: clean
|
||||
-(! test -d $(BINDIR)) || (cd $(BINDIR) && \rm -f $(PROGS))
|
||||
@@ -0,0 +1,43 @@
|
||||
#
|
||||
# $Id: $
|
||||
#
|
||||
# lxlib.targ
|
||||
#
|
||||
# default make targets for standard lx library
|
||||
#
|
||||
# you should define the 'LOCLIB' and 'OSRC' variables
|
||||
#
|
||||
# 'auto.conf' should have been included
|
||||
#
|
||||
|
||||
OBJ = $(OSRC:.c=.o)
|
||||
|
||||
INCDIR = ../include
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all lib install test clean portclean
|
||||
|
||||
all:: lib install
|
||||
@echo "+++++++++++ library $(LOCLIB) done"
|
||||
|
||||
lib:: $(OBJ)
|
||||
$(AR) $(ARFLAGS) $(LOCLIB) $(OBJ)
|
||||
$(RANLIB) $(LOCLIB)
|
||||
|
||||
install::
|
||||
test -d $(PRTDIR) || mkdir $(PRTDIR)
|
||||
test -d $(LIBDIR) || mkdir $(LIBDIR)
|
||||
\cp -f $(LOCLIB) $(LIBDIR)
|
||||
$(RANLIB) $(LIBDIR)/$(LOCLIB)
|
||||
|
||||
test::
|
||||
|
||||
clean::
|
||||
-\rm -f *.o cvstatic* *% *.bak so_loc*
|
||||
-\rm -f $(LOCLIB)
|
||||
|
||||
portclean:: clean
|
||||
-(! test -d $(LIBDIR)) || (cd $(LIBDIR) && \rm -f $(LOCLIB))
|
||||
@@ -0,0 +1,48 @@
|
||||
#
|
||||
# $Id: package.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# package.targ
|
||||
#
|
||||
# default make targets for standard package with configure
|
||||
#
|
||||
# you should define the 'PKG' variable
|
||||
# (and optionaly 'PKGTAR', 'PKGDIR')
|
||||
#
|
||||
|
||||
PKGTAR ?= $(PKG).tgz
|
||||
|
||||
PKGDIR ?= build.$(PORTNAME)
|
||||
|
||||
PRTPATH = $(abspath $(PRTDIR))
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all clean test portclean pkg pkg.expand pkg.make pkg.install
|
||||
|
||||
all:: pkg
|
||||
|
||||
pkg.expand::
|
||||
test -d $(PKGDIR) || mkdir $(PKGDIR)
|
||||
test -f $(PKGDIR)/configure || $(TAR) zxf $(PKGTAR) -C $(PKGDIR) --strip-components 1
|
||||
|
||||
pkg.make:: pkg.expand
|
||||
test -f $(PKGDIR)/Makefile || (cd $(PKGDIR) && ./configure --prefix=$(PRTPATH))
|
||||
$(MAKE) -C $(PKGDIR)
|
||||
|
||||
pkg.install:: pkg.make
|
||||
$(MAKE) -C $(PKGDIR) install
|
||||
|
||||
pkg:: pkg.install
|
||||
@echo "+++++++++++ package $(PKG) done"
|
||||
|
||||
test::
|
||||
(! test -d $(PKGDIR)) || $(MAKE) -C $(PKGDIR) test
|
||||
|
||||
clean::
|
||||
(! test -d $(PKGDIR)) || $(MAKE) -C $(PKGDIR) clean
|
||||
|
||||
portclean::
|
||||
(! test -d $(PKGDIR)) || $(MAKE) -C $(PKGDIR) distclean
|
||||
(! test -d $(PKGDIR)) || \rm -r $(PKGDIR)
|
||||
@@ -0,0 +1,30 @@
|
||||
#
|
||||
# $Id: propagate.targ 1825 2013-02-26 09:39:47Z viari $
|
||||
#
|
||||
# propagate.targ
|
||||
#
|
||||
# default make targets for library containers
|
||||
#
|
||||
# you should define the 'DIRS' variable
|
||||
#
|
||||
# It will propagate 'MAKE <target>' to all
|
||||
# directories listed in DIRS
|
||||
#
|
||||
|
||||
#
|
||||
# Rules
|
||||
#
|
||||
|
||||
.PHONY: all _action $(DIRS)
|
||||
|
||||
.DEFAULT:
|
||||
$(MAKE) ACTION=$@ _action
|
||||
|
||||
all::
|
||||
$(MAKE) ACTION=all _action
|
||||
|
||||
_action: $(DIRS)
|
||||
@echo "$(ACTION) done"
|
||||
|
||||
$(DIRS):
|
||||
$(MAKE) -C $@ $(ACTION)
|
||||
@@ -0,0 +1,187 @@
|
||||
/* ---------------------------------------------------------------- */
|
||||
/* Copyright (c) Atelier de BioInformatique */
|
||||
/* @file: Genetic.h */
|
||||
/* @desc: Genetic codes / include file */
|
||||
/* */
|
||||
/* @history: */
|
||||
/* @+ <Gloup> : Jan 96 : first draft for PWG from acnuc */
|
||||
/* ---------------------------------------------------------------- */
|
||||
|
||||
#ifndef _H_Genetic
|
||||
|
||||
#define _H_Genetic
|
||||
|
||||
/* ==================================================== */
|
||||
/* Constants */
|
||||
/* ==================================================== */
|
||||
|
||||
#define DNA_ALPHA "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"
|
||||
#define C_DNA_ALPHA "TVGHEFCDIJMLKNOPQYSAABWXRZtvghefcdijmlknopqysaabwxrz"
|
||||
|
||||
#define GEN_NUC_ALPHA "AaCcGgTtUu"
|
||||
#define GEN_PRO_ALPHA "RLSTPAGVKNQHEDYCFIMW*X"
|
||||
|
||||
#define GEN_MAX_CODES 9
|
||||
|
||||
#define GEN_CODE_UNIVL 0 /* Universal */
|
||||
#define GEN_CODE_MYEAS 1 /* mito yeast */
|
||||
#define GEN_CODE_MVERT 2 /* mito vertebrate */
|
||||
#define GEN_CODE_FUNGI 3 /* filamentous fungi */
|
||||
#define GEN_CODE_MINSE 4 /* mito insects & platyhelminthes */
|
||||
#define GEN_CODE_CANDI 5 /* Candida cylindracea */
|
||||
#define GEN_CODE_CILIA 6 /* Ciliata */
|
||||
#define GEN_CODE_EUPLO 7 /* Euplotes */
|
||||
#define GEN_CODE_MECHI 8 /* mito echinoderms */
|
||||
|
||||
/* ==================================================== */
|
||||
/* Data Structures */
|
||||
/* ==================================================== */
|
||||
|
||||
typedef struct GeneticCode {
|
||||
char title[256]; /* nom du code */
|
||||
char info[256]; /* informations */
|
||||
int code[65]; /* 64 codons + Error */
|
||||
} GeneticCode;
|
||||
|
||||
/* ==================================================== */
|
||||
/* Data Instanciation */
|
||||
/* ==================================================== */
|
||||
|
||||
#ifdef GENETIC_CODE_INSTANCE
|
||||
|
||||
GeneticCode theGeneticCode[GEN_MAX_CODES] = { /* Begin of codes */
|
||||
|
||||
{ /* 0: UNIVERSAL */
|
||||
{"Universal"},
|
||||
{""},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
0, 2, 0, 2, 17, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 1, 1, 1, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
20, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 1: MITOCHONDRIAL YEAST */
|
||||
{"Mitochondrial Yeast"},
|
||||
{"CUN=T AUA=M UGA=W"},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
0, 2, 0, 2, 18, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 3, 3, 3, 3,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
19, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 2: MITOCHONDRIAL VERTEBRATES */
|
||||
{"Mitochondrial Vertebrates"},
|
||||
{"AGR=* AUA=M UGA=W"},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
20, 2, 20, 2, 18, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 1, 1, 1, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
19, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 3: MITOCHONDRIAL FILAMENTOUS FUNGI */
|
||||
{"Mitochondrial Filamentous Fungi"},
|
||||
{"UGA=W"},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
0, 2, 0, 2, 17, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 1, 1, 1, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
19, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 4: MITOCHONDRIAL CODE OF INSECT AND PLATYHELMINTHES */
|
||||
{"Mitochondrial Insects and Platyhelminthes"},
|
||||
{"AUA=M UGA=W AGR=S"},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
2, 2, 2, 2, 18, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 1, 1, 1, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
19, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 5: CANDIDA CYLINDRACEA (see nature 341:164) */
|
||||
{"Candida cylindracea"},
|
||||
{"CUG=S CUA=?"},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
0, 2, 0, 2, 17, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 21, 1, 2, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
20, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 6: CILIATA */
|
||||
{"Ciliata"},
|
||||
{"UAR=Q"},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
0, 2, 0, 2, 17, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 1, 1, 1, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
10, 14, 10, 14, 2, 2, 2, 2,
|
||||
20, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 7: EUPLOTES */
|
||||
{"Euplotes"},
|
||||
{"UGA=C"},
|
||||
{ 8, 9, 8, 9, 3, 3, 3, 3,
|
||||
0, 2, 0, 2, 17, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 1, 1, 1, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
15, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
},
|
||||
|
||||
{ /* 8: MITOCHONDRIAL ECHINODERMS */
|
||||
{"Mitochondrial Echinoderms"},
|
||||
{"UGA=W AGR=S AAA=N"},
|
||||
{ 9, 9, 8, 9, 3, 3, 3, 3,
|
||||
2, 2, 2, 2, 17, 17, 18, 17,
|
||||
10, 11, 10, 11, 4, 4, 4, 4,
|
||||
0, 0, 0, 0, 1, 1, 1, 1,
|
||||
12, 13, 12, 13, 5, 5, 5, 5,
|
||||
6, 6, 6, 6, 7, 7, 7, 7,
|
||||
20, 14, 20, 14, 2, 2, 2, 2,
|
||||
19, 15, 19, 15, 1, 16, 1, 16,
|
||||
21}
|
||||
}
|
||||
|
||||
/* end of codes */ };
|
||||
|
||||
#else
|
||||
|
||||
extern GeneticCode theGeneticCode[GEN_MAX_CODES];
|
||||
|
||||
#endif
|
||||
#endif
|
||||
@@ -0,0 +1,64 @@
|
||||
/* ---------------------------------------------------------------- */
|
||||
/* Copyright (c) Atelier de BioInformatique */
|
||||
/* @file: fasta_io.h */
|
||||
/* @desc: sequence IO in fasta format / include file */
|
||||
/* */
|
||||
/* @history: */
|
||||
/* @+ <Gloup> : Aug 92 : first version */
|
||||
/* @+ <Gloup> : Nov 95 : last revised version */
|
||||
/* ---------------------------------------------------------------- */
|
||||
|
||||
#ifndef _H_fasta_io
|
||||
|
||||
#define _H_fasta_io
|
||||
|
||||
/* ==================================================== */
|
||||
/* Constantes */
|
||||
/* ==================================================== */
|
||||
|
||||
#define FASTA_NAMLEN 64 /* max length of seq. name */
|
||||
#define FASTA_COMLEN 512 /* max length of seq. comment */
|
||||
|
||||
#define FASTA_CHAR_PER_LINE 50 /* # of chars per line in output */
|
||||
|
||||
/* ==================================================== */
|
||||
/* Macros standards */
|
||||
/* ==================================================== */
|
||||
|
||||
#ifndef NEW
|
||||
#define NEW(typ) (typ*)malloc(sizeof(typ))
|
||||
#define NEWN(typ, dim) (typ*)malloc((unsigned)(dim) * sizeof(typ))
|
||||
#define REALLOC(typ, ptr, dim) (typ*)realloc((void *) (ptr), (unsigned long)(dim) * sizeof(typ))
|
||||
#define FREE(ptr) free(ptr)
|
||||
#endif
|
||||
|
||||
/* ==================================================== */
|
||||
/* Structures de donnees */
|
||||
/* ==================================================== */
|
||||
|
||||
typedef struct { /* -- Sequence ---------------- */
|
||||
int ok; /* error flag */
|
||||
long length, /* longueur */
|
||||
offset, /* current offset */
|
||||
bufsize; /* size of current seq buffer */
|
||||
char name[FASTA_NAMLEN+2], /* nom */
|
||||
comment[FASTA_COMLEN+2], /* commentaire */
|
||||
*seq; /* sequence */
|
||||
} FastaSequence, *FastaSequencePtr;
|
||||
|
||||
/* ==================================================== */
|
||||
/* Prototypes (generated by mkproto) */
|
||||
/* ==================================================== */
|
||||
|
||||
/* libfasta.c */
|
||||
|
||||
FastaSequencePtr NewFastaSequence ( void );
|
||||
FastaSequencePtr FreeFastaSequence ( FastaSequencePtr seq );
|
||||
|
||||
int ReadFastaSequence ( FILE *streamin, FastaSequencePtr seq );
|
||||
int GetFastaSequence ( FILE *streamin, FastaSequencePtr seq );
|
||||
void WriteFastaSequence ( FILE *streamou, FastaSequencePtr seq , int char_per_line );
|
||||
|
||||
void RewindFastaDB ( FILE *streamin );
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,169 @@
|
||||
/* ==================================================== */
|
||||
/* @File kimono.h */
|
||||
/* @history: */
|
||||
/* @+ Nov. 03 <Gloup> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#define _H_kimono
|
||||
|
||||
#ifndef _H_fasta_io
|
||||
#include "fasta_io.h"
|
||||
#endif
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* constantes */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
#define NB_NUC 4
|
||||
#define NB_AA 21
|
||||
#define NB_CODONS 64
|
||||
|
||||
#define SHIFT_NUC 2 /* # bits for NB_NUC */
|
||||
|
||||
#define KIM_DNA "ACGT"
|
||||
#define KIM_AA "ACDEFGHIKLMNPQRSTVWY*"
|
||||
|
||||
#define MASKED_SYMBOL 'X'
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* struct de donnees */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
typedef struct {
|
||||
int from, to, strand;
|
||||
} Interval;
|
||||
|
||||
typedef struct {
|
||||
int size, capacity;
|
||||
Interval *interval;
|
||||
} SetOfIntervals;
|
||||
|
||||
typedef struct {
|
||||
char index;
|
||||
char mask;
|
||||
} SeqCell;
|
||||
|
||||
typedef struct {
|
||||
int length;
|
||||
char symbol[128];
|
||||
} Alphabet;
|
||||
|
||||
typedef struct {
|
||||
Alphabet *alphabet;
|
||||
FastaSequence *fasta;
|
||||
SeqCell *cell;
|
||||
} Sequence;
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* counting, indexing and distance functions */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
typedef void (*IndexFunction) (Sequence *seq, SetOfIntervals *zones, int phase);
|
||||
typedef void (*CountFunction) (Sequence *seq, int from, int to, int count[][2], int nbins, int increment);
|
||||
typedef void (*MixFunction) (int left[][2], int right[][2], int countLeft[], int countRight[], int nbins);
|
||||
typedef float (*DistFunction) (int bins1[], int bins2[], int nbins, int ibin);
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* masks for sequence */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
#define EXCLUDE_MASK 0x01 /* 00000001 */
|
||||
#define INCLUDE_MASK 0x7e /* 01111110 */
|
||||
#define DIRECT_MASK 0x02 /* 00000010 */
|
||||
#define REVERSE_MASK 0x04 /* 00000100 */
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* macros */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
#define IS_UPPER(c) (((c) >= 'A') && ((c) <= 'Z'))
|
||||
#define IS_LOWER(c) (((c) >= 'a') && ((c) <= 'z'))
|
||||
#define IS_ALPHA(c) (IS_UPPER(c) || IS_LOWER(c))
|
||||
|
||||
#define TO_UPPER(c) ((c) - 'a' + 'A')
|
||||
#define TO_LOWER(c) ((c) - 'A' + 'a')
|
||||
|
||||
#define UPPER(x) (IS_LOWER(x) ? TO_UPPER(x) : (x))
|
||||
#define LOWER(x) (IS_UPPER(x) ? TO_LOWER(x) : (x))
|
||||
|
||||
#define MIN2(a, b) ((a) < (b) ? (a) : (b))
|
||||
#define MAX2(a, b) ((a) > (b) ? (a) : (b))
|
||||
|
||||
#ifndef NEW
|
||||
#define NEW(type) (type *) malloc(sizeof(type))
|
||||
#define NEWN(type, n) (type *) malloc((n) * sizeof(type))
|
||||
#define REALLOC(type, ptr, n) (type *) realloc(ptr, (n) * sizeof(type))
|
||||
#define FREE(ptr) free(ptr)
|
||||
#endif
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* Prototypes */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* kim_util.c */
|
||||
|
||||
int Erreur (char *msg , int stat);
|
||||
int MemoryErreur (char *where, int stat);
|
||||
int AssignToStdin (char *filename);
|
||||
|
||||
/* kim_alphabet.c */
|
||||
|
||||
Alphabet *FreeAlphabet (Alphabet *alpha);
|
||||
Alphabet *NewAlphabet (char *symbols);
|
||||
Alphabet *CopyAlphabet (Alphabet *alpha);
|
||||
Alphabet *NucleicAlphabet ();
|
||||
Alphabet *AminoAlphabet ();
|
||||
|
||||
/* kim_sequence.c */
|
||||
|
||||
Sequence *FreeSequence (Sequence *seq);
|
||||
Sequence *NewSequence (Alphabet *alpha);
|
||||
int ReadSequence (FILE *streamin, Sequence *seq);
|
||||
|
||||
/* kim_genetic.c */
|
||||
|
||||
int BaseComplement (int ch);
|
||||
char *SeqComplement (char *str);
|
||||
int CodonTranslate (char *codon, int codid);
|
||||
|
||||
/* kim_zone.c */
|
||||
|
||||
SetOfIntervals *FreeZones (SetOfIntervals *set);
|
||||
SetOfIntervals *ReadZones (int seqlength);
|
||||
|
||||
/* kim_indexer.c */
|
||||
|
||||
void NoZoneIndexer (Sequence *seq, SetOfIntervals *zones, int phase);
|
||||
void ExcludeIndexer (Sequence *seq, SetOfIntervals *zones, int phase);
|
||||
void GeneIndexer (Sequence *seq, SetOfIntervals *zones, int phase);
|
||||
void PhaseIndexer (Sequence *seq, SetOfIntervals *zones, int phase);
|
||||
void CodonIndexer (Sequence *seq, SetOfIntervals *zones, int phase);
|
||||
|
||||
/* kim_counter.c */
|
||||
|
||||
void BasicCounter (Sequence *seq, int from, int to,
|
||||
int count[][2], int nbins, int increment);
|
||||
void CodonSkewCounter (Sequence *seq, int from, int to,
|
||||
int count[][2], int nbins, int increment);
|
||||
|
||||
/* kim_mixer.c */
|
||||
void BasicMixer (int left[][2], int right[][2],
|
||||
int *countLeft, int *countRight, int nbins);
|
||||
void CrossMixer (int left[][2], int right[][2],
|
||||
int *countLeft, int *countRight, int nbins);
|
||||
|
||||
/* kim_distance.c */
|
||||
|
||||
float ChisTwo(int bins1[], int bins2[], int nbins, int ibin);
|
||||
float Euclid(int bins1[], int bins2[], int nbins, int ibin);
|
||||
float HellTwo(int bins1[], int bins2[], int nbins, int ibin);
|
||||
int SignTwoBins(int bins1[], int bins2[]);
|
||||
|
||||
/* kim_codonskew.c */
|
||||
|
||||
void CodonSkew (int code, float score[NB_NUC][NB_CODONS]);
|
||||
|
||||
/* kim*_help.c */
|
||||
void PrintHelp (void);
|
||||
int ExitUsage (int stat);
|
||||
|
||||
@@ -0,0 +1,43 @@
|
||||
# ---------------------------------------------------------------
|
||||
# $Id: $
|
||||
#
|
||||
# @file: Makefile
|
||||
# @desc: makefile for kimono/src
|
||||
#
|
||||
# @history:
|
||||
#
|
||||
# @note: should be processed with gnu compatible make
|
||||
# @note: helixware_compatible
|
||||
#
|
||||
# @end:
|
||||
# ---------------------------------------------------------------
|
||||
#
|
||||
|
||||
include ../config/auto.conf
|
||||
|
||||
PROGS = kimono kimfit
|
||||
|
||||
OSRC = fasta_io.c \
|
||||
kim_util.c \
|
||||
kim_alphabet.c \
|
||||
kim_sequence.c \
|
||||
kim_zone.c \
|
||||
kim_indexer.c \
|
||||
kim_counter.c \
|
||||
kim_mixer.c \
|
||||
kim_distance.c \
|
||||
kim_genetic.c \
|
||||
kim_codonskew.c
|
||||
|
||||
include ../config/targets/lxbin.targ
|
||||
include ../config/targets/help.targ
|
||||
|
||||
#
|
||||
# file dependencies
|
||||
#
|
||||
|
||||
kimono: $(OBJ) kimono_main.c kimono_help.c
|
||||
$(CC) $(CFLAGS) -o $@ $^ $(LDFLAGS) $(LDLIBS)
|
||||
|
||||
kimfit: $(OBJ) kimfit_main.c
|
||||
$(CC) $(CFLAGS) -o $@ $^ $(LDFLAGS) $(LDLIBS)
|
||||
@@ -0,0 +1,6 @@
|
||||
|
||||
- dist PHI2
|
||||
|
||||
- inversion strand -
|
||||
|
||||
|
||||
Executable
+388
@@ -0,0 +1,388 @@
|
||||
/* ---------------------------------------------------------------- */
|
||||
/* Copyright (c) Atelier de BioInformatique */
|
||||
/* @file: fasta_io.c */
|
||||
/* @desc: sequence IO in fasta format */
|
||||
/* */
|
||||
/* @history: */
|
||||
/* @+ <Gloup> : Aug 92 : first version */
|
||||
/* @+ <Gloup> : Nov 95 : last revised version */
|
||||
/* ---------------------------------------------------------------- */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "fasta_io.h"
|
||||
|
||||
#define SECURE 1 /* 1 : secure copy ; 0 : quickest copy */
|
||||
|
||||
#define READ_NEXT 0 /* force to read next io buffer line */
|
||||
#define PUSH_BACK 1 /* force to push back io buffer line */
|
||||
|
||||
#define SERIAL 1 /* serial reading */
|
||||
#define INDEXED 0 /* indexed reading */
|
||||
|
||||
#ifdef MAC_OS_C
|
||||
#define LINE_FEED '\r'
|
||||
#else
|
||||
#define LINE_FEED '\n'
|
||||
#endif
|
||||
|
||||
static int sRetained = 0; /* 1 : reuse last buffer line */
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* @static: lecture bufferisee */
|
||||
/* this is the main IO function */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
static char * sNextIOBuffer(FILE *streamin, int retain, int serial)
|
||||
{
|
||||
char *buf, *end;
|
||||
int reused;
|
||||
|
||||
static char sBuffer[BUFSIZ]; /* BUFSIZ in <stdio.h> */
|
||||
|
||||
reused = (retain || sRetained) && serial;
|
||||
|
||||
sRetained = retain;
|
||||
|
||||
buf = ( reused
|
||||
? sBuffer
|
||||
: fgets(sBuffer, sizeof(sBuffer), streamin));
|
||||
|
||||
if (! buf) /* end of file */
|
||||
return NULL;
|
||||
|
||||
end = buf + strlen(buf) - 1;
|
||||
|
||||
if (*end == LINE_FEED) /* remove trailing \n */
|
||||
*end = '\000';
|
||||
|
||||
return ( *buf || reused
|
||||
? buf
|
||||
: sNextIOBuffer(streamin, retain, serial));
|
||||
}
|
||||
|
||||
#if SECURE
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* compte le nombre de caracteres alpha dans */
|
||||
/* un buffer */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
static long sCountAlpha(char *buf)
|
||||
{
|
||||
long count;
|
||||
|
||||
for (count = 0 ; *buf ; buf++)
|
||||
if (isalpha(*buf))
|
||||
count++;
|
||||
|
||||
return count;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* copy only alpha chars from s2 to s1 */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
static char *sStrcpyAlpha(char *s1, char *s2)
|
||||
{
|
||||
for( ; *s2 ; s2++)
|
||||
if (isalpha(*s2))
|
||||
*s1++ = *s2;
|
||||
|
||||
*s1 = '\000';
|
||||
|
||||
return s1;
|
||||
}
|
||||
#endif
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* skip to next space in buffer */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
static char *sNextSpace(char *buffer)
|
||||
{
|
||||
for (; *buffer ; buffer++)
|
||||
if (isspace(*buffer))
|
||||
return buffer;
|
||||
|
||||
return NULL;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* returns sequence name (FASTA) */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
static char *sGetFastaName(char *buffer)
|
||||
{
|
||||
char c[2];
|
||||
static char sName[FASTA_NAMLEN+2];
|
||||
|
||||
*c = buffer[FASTA_NAMLEN];
|
||||
buffer[FASTA_NAMLEN] = '\000';
|
||||
|
||||
if (sscanf(buffer + 1, "%s", sName) != 1)
|
||||
(void) strcpy(sName, "<no Name>");
|
||||
|
||||
buffer[FASTA_NAMLEN] = *c;
|
||||
|
||||
return sName;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* returns sequence comment (FASTA) */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
static char *sGetFastaComment(char *buffer)
|
||||
{
|
||||
char c[2], *space;
|
||||
static char sComment[FASTA_COMLEN+2];
|
||||
|
||||
*c = buffer[FASTA_COMLEN];
|
||||
buffer[FASTA_COMLEN] = '\000';
|
||||
|
||||
space = sNextSpace(buffer);
|
||||
|
||||
(void) strcpy(sComment, (space ? space + 1 : "<no comment>"));
|
||||
|
||||
buffer[FASTA_COMLEN] = *c;
|
||||
|
||||
return sComment;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* API */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* liberation d'une sequence */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
FastaSequencePtr FreeFastaSequence(FastaSequencePtr seq)
|
||||
{
|
||||
if (seq) {
|
||||
if (seq->seq)
|
||||
FREE(seq->seq);
|
||||
FREE(seq);
|
||||
}
|
||||
|
||||
return NULL;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* allocation d'une sequence */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
FastaSequencePtr NewFastaSequence()
|
||||
{
|
||||
FastaSequencePtr seq;
|
||||
|
||||
if (! (seq = NEW(FastaSequence)))
|
||||
return NULL;
|
||||
|
||||
seq->length = 0;
|
||||
seq->offset = -1;
|
||||
|
||||
if (! (seq->seq = NEWN(char, BUFSIZ)))
|
||||
return FreeFastaSequence(seq);
|
||||
|
||||
seq->bufsize = BUFSIZ;
|
||||
|
||||
*(seq->name) = '\000';
|
||||
*(seq->comment) = '\000';
|
||||
|
||||
seq->ok = 1;
|
||||
|
||||
return seq;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* lecture <Serie> d'une sequence au format Fasta */
|
||||
/* returns : 0 -> last sequence */
|
||||
/* 1 -> more to read */
|
||||
/* <but> you must check seq->ok */
|
||||
/* that may be 0 (memory error) */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
int ReadFastaSequence(FILE *streamin, FastaSequencePtr seq)
|
||||
{
|
||||
long readlen, buflen;
|
||||
char *buffer, *tbuf;
|
||||
|
||||
seq->ok = 0; /* assume error */
|
||||
|
||||
buflen = seq->length = 0;
|
||||
|
||||
seq->offset = ftell(streamin);
|
||||
|
||||
buffer = sNextIOBuffer(streamin, READ_NEXT, SERIAL);
|
||||
|
||||
if (! (buffer && (*buffer == '>'))) /* sync error */
|
||||
return 0; /* last sequence */
|
||||
|
||||
if (seq->offset)
|
||||
seq->offset -= (strlen(buffer) + 1);
|
||||
|
||||
(void) strcpy(seq->name, sGetFastaName(buffer));
|
||||
|
||||
(void) strcpy(seq->comment, sGetFastaComment(buffer));
|
||||
|
||||
while (buffer = sNextIOBuffer(streamin, READ_NEXT, SERIAL)) {
|
||||
|
||||
if (*buffer == '>') {
|
||||
(void) sNextIOBuffer(streamin, PUSH_BACK, SERIAL); /* push it back */
|
||||
break;
|
||||
}
|
||||
|
||||
#if SECURE
|
||||
readlen = sCountAlpha(buffer);
|
||||
#else
|
||||
readlen = strlen(buffer);
|
||||
#endif
|
||||
|
||||
buflen += readlen;
|
||||
|
||||
if (buflen >= seq->bufsize) {
|
||||
|
||||
if (! (tbuf = REALLOC(char, seq->seq, 2 * buflen + 1)))
|
||||
return 1; /* but seq->ok is 0 */
|
||||
|
||||
seq->seq = tbuf;
|
||||
|
||||
seq->bufsize = 2 * buflen + 1;
|
||||
|
||||
}
|
||||
|
||||
#if SECURE
|
||||
sStrcpyAlpha(seq->seq + seq->length, buffer);
|
||||
#else
|
||||
(void) memcpy(seq->seq + seq->length, buffer, readlen);
|
||||
#endif
|
||||
|
||||
seq->length = buflen;
|
||||
|
||||
}
|
||||
|
||||
seq->seq[seq->length] = '\000';
|
||||
|
||||
return (seq->ok = 1);
|
||||
}
|
||||
|
||||
/* ------------------------------------------------- */
|
||||
/* lecture <Indexee> d'une sequence au format Fasta */
|
||||
/* use the internal seq->offset variable to position */
|
||||
/* on the correct sequence. */
|
||||
/* returns : 0 -> sync or memory error */
|
||||
/* 1 -> read ok */
|
||||
/* ------------------------------------------------- */
|
||||
|
||||
int GetFastaSequence(FILE *streamin, FastaSequencePtr seq)
|
||||
{
|
||||
long readlen, buflen;
|
||||
char *buffer, *tbuf;
|
||||
|
||||
seq->ok = 0; /* assume error */
|
||||
|
||||
if (seq->offset < 0)
|
||||
return 0; /* bad offset */
|
||||
|
||||
buflen = seq->length = 0;
|
||||
|
||||
(void) fseek(streamin, seq->offset, SEEK_SET);
|
||||
|
||||
buffer = sNextIOBuffer(streamin, READ_NEXT, INDEXED);
|
||||
|
||||
if (! (buffer && (*buffer == '>'))) /* sync error */
|
||||
return 0; /* last sequence */
|
||||
|
||||
(void) strcpy(seq->name, sGetFastaName(buffer));
|
||||
|
||||
(void) strcpy(seq->comment, sGetFastaComment(buffer));
|
||||
|
||||
while (buffer = sNextIOBuffer(streamin, READ_NEXT, INDEXED)) {
|
||||
|
||||
if (*buffer == '>')
|
||||
break;
|
||||
|
||||
#if SECURE
|
||||
readlen = sCountAlpha(buffer);
|
||||
#else
|
||||
readlen = strlen(buffer);
|
||||
#endif
|
||||
|
||||
buflen += readlen;
|
||||
|
||||
if (buflen >= seq->bufsize) {
|
||||
|
||||
if (! (tbuf = REALLOC(char, seq->seq, 2 * buflen + 1)))
|
||||
return 0;
|
||||
|
||||
seq->seq = tbuf;
|
||||
|
||||
seq->bufsize = 2 * buflen + 1;
|
||||
|
||||
}
|
||||
#if SECURE
|
||||
sStrcpyAlpha(seq->seq + seq->length, buffer);
|
||||
#else
|
||||
(void) memcpy(seq->seq + seq->length, buffer, readlen);
|
||||
#endif
|
||||
|
||||
seq->length = buflen;
|
||||
|
||||
}
|
||||
|
||||
seq->seq[seq->length] = '\000';
|
||||
|
||||
return (seq->ok = 1);
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* ecriture d'une sequence au format Fasta */
|
||||
/* -------------------------------------------- */
|
||||
void WriteFastaSequence(FILE *streamou, FastaSequencePtr seq,
|
||||
int char_per_line)
|
||||
{
|
||||
long i, nlines, nrest, nchar;
|
||||
char *buf, *end, tempo;
|
||||
|
||||
(void) fputc('>', streamou);
|
||||
(void) fputs((*(seq->name) ? seq->name : "<no name>"), streamou);
|
||||
(void) fputc(' ', streamou);
|
||||
(void) fputs((*(seq->comment) ? seq->comment : "<no comment>"), streamou);
|
||||
(void) fputc(LINE_FEED, streamou);
|
||||
|
||||
nlines = seq->length / char_per_line;
|
||||
nrest = seq->length % char_per_line;
|
||||
|
||||
if (nrest)
|
||||
nlines++;
|
||||
|
||||
buf = seq->seq;
|
||||
|
||||
for (i = 1 ; i <= nlines ; i++) {
|
||||
nchar = ((nrest && (i == nlines)) ? nrest : char_per_line);
|
||||
end = buf + nchar;
|
||||
tempo = *end;
|
||||
*end = '\000';
|
||||
(void) fputs(buf, streamou);
|
||||
(void) fputc(LINE_FEED , streamou);
|
||||
*end = tempo;
|
||||
buf += nchar;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* rewind db file */
|
||||
/* -------------------------------------------- */
|
||||
void RewindFastaDB(FILE *streamin)
|
||||
{
|
||||
sRetained = 0; /* forget previous buffer */
|
||||
|
||||
if (streamin)
|
||||
rewind(streamin);
|
||||
}
|
||||
|
||||
Executable
+83
@@ -0,0 +1,83 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_alphabet.c */
|
||||
/* alphabet handling */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* some static alphabets */
|
||||
|
||||
static char sDNA[] = KIM_DNA;
|
||||
static char sAA[] = KIM_AA;
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* API */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* free alphabet */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
Alphabet * FreeAlphabet(Alphabet *alpha) {
|
||||
if (alpha) FREE(alpha);
|
||||
return NULL;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* new alphabet */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
Alphabet *NewAlphabet(char *symbols) {
|
||||
Alphabet *alpha;
|
||||
|
||||
if (alpha = NEW(Alphabet)) {
|
||||
(void) strcpy(alpha->symbol, symbols);
|
||||
alpha->length = strlen(alpha->symbol);
|
||||
}
|
||||
|
||||
return alpha;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* copy alphabet */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
Alphabet *CopyAlphabet(Alphabet *alpha) {
|
||||
return NewAlphabet(alpha->symbol);
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* standard alphabets */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* DNA */
|
||||
|
||||
Alphabet *NucleicAlphabet() {
|
||||
return NewAlphabet(sDNA);
|
||||
}
|
||||
|
||||
/* AA */
|
||||
|
||||
Alphabet *AminoAlphabet() {
|
||||
return NewAlphabet(sAA);
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* index of symbol in alphabet */
|
||||
/* return : index of symbol in alphabet */
|
||||
/* -1 if not found */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
int AlphaIndex(Alphabet *alpha, char symbol) {
|
||||
|
||||
char *pos = strchr(alpha->symbol, UPPER(symbol));
|
||||
|
||||
return (pos ? (int) (pos - alpha->symbol) : -1);
|
||||
}
|
||||
Executable
+142
@@ -0,0 +1,142 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_codonskew.c */
|
||||
/* general utilities functions */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* make string buffer of all codons : */
|
||||
/* "AAA/AAC/AAT/AAG/ACA/....../GGG/" */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static void sMakeStdCodons(char *buffer, char *alphaN)
|
||||
{
|
||||
int i, j, k, n;
|
||||
|
||||
n = strlen(alphaN);
|
||||
|
||||
for (i = 0 ; i < n ; i++)
|
||||
for (j = 0 ; j < n ; j++)
|
||||
for (k = 0 ; k < n ; k++) {
|
||||
*buffer++ = alphaN[i];
|
||||
*buffer++ = alphaN[j];
|
||||
*buffer++ = alphaN[k];
|
||||
*buffer++ = '/';
|
||||
}
|
||||
*buffer = '\000';
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* make string buffer of synonymous codons coding */
|
||||
/* for aa */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static void sMakeAaCodons(char *buffer, char *alphaN, int aa, int code)
|
||||
{
|
||||
int aai;
|
||||
char *c, codons[4*NB_CODONS+1];
|
||||
|
||||
sMakeStdCodons(codons, alphaN);
|
||||
|
||||
for (c = codons ; *c ; c += 4) {
|
||||
aai = CodonTranslate(c, code);
|
||||
if (aai == aa) {
|
||||
strncpy(buffer, c, 3);
|
||||
buffer[3] = '/';
|
||||
buffer += 4;
|
||||
}
|
||||
}
|
||||
*buffer = '\000';
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* return index of aa encoded by codon */
|
||||
/* or -1 if not found */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sAaIndex(char *codon, char *alphaA, int code)
|
||||
{
|
||||
int aa;
|
||||
char *paa;
|
||||
|
||||
aa = CodonTranslate(codon, code);
|
||||
|
||||
if ((paa = strchr(alphaA, aa)) != 0)
|
||||
return (int) (paa - alphaA);
|
||||
|
||||
return -1;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* count # occurences of char mark in buffer */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sCount(char *buffer, int mark)
|
||||
{
|
||||
int count;
|
||||
|
||||
for (count = 0 ; *buffer ; buffer++) {
|
||||
if (*buffer == mark)
|
||||
count++;
|
||||
}
|
||||
|
||||
return count;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* skew score of one codon */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static float sCodonSkew(char *codon, char *alphaN, char *alphaA, int symb, int code) {
|
||||
|
||||
int iaa, nsyn, n0, nM;
|
||||
char synon[4*NB_CODONS+1], buf[4];
|
||||
|
||||
strncpy(buf, codon, 3);
|
||||
buf[3] = '\000';
|
||||
|
||||
iaa = sAaIndex(buf, alphaA, code);
|
||||
|
||||
sMakeAaCodons(synon, alphaN, alphaA[iaa], code);
|
||||
|
||||
n0 = sCount(buf, symb);
|
||||
|
||||
nsyn = strlen(synon) / 4;
|
||||
|
||||
nM = sCount(synon, symb);
|
||||
|
||||
return ((float) (n0) - ((float) (nM) / (float) nsyn));
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* API */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* skew scores of all codons */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void CodonSkew(int code, float score[NB_NUC][NB_CODONS]) {
|
||||
|
||||
int i, j;
|
||||
char *trip;
|
||||
char alpha[NB_NUC+1], codons[4*NB_CODONS+1];
|
||||
|
||||
(void) strcpy(alpha, KIM_DNA);
|
||||
|
||||
sMakeStdCodons(codons, alpha);
|
||||
|
||||
for (i = 0 ; i < NB_NUC ; i++) {
|
||||
for (j = 0, trip = codons ; j < NB_CODONS ; j++, trip += 4) {
|
||||
score[i][j] = sCodonSkew(trip, alpha, KIM_AA, alpha[i], code);
|
||||
}
|
||||
}
|
||||
}
|
||||
Executable
+140
@@ -0,0 +1,140 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_counter.c */
|
||||
/* counting functions */
|
||||
/* @history: */
|
||||
/* @+ Jul. 06 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "Genetic.h"
|
||||
#include "kimono.h"
|
||||
|
||||
/* holds nucleotide enrichment for each codon */
|
||||
|
||||
static float sCodonScore[NB_NUC][NB_CODONS];
|
||||
static int sScoreInited = 0;
|
||||
|
||||
/* hold DNA amhabet
|
||||
|
||||
static char sDNA[] = KIM_DNA;
|
||||
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* API */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* basic nucleotide counting */
|
||||
/* */
|
||||
/* count : second dimension is for strand */
|
||||
/* increment : 1, -1 or 0 (0 means reset then 1) */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void BasicCounter(Sequence *seq, int from, int to,
|
||||
int count[][2], int nbins, int increment) {
|
||||
|
||||
int i, len;
|
||||
|
||||
if (increment == 0) { /* this is a reset */
|
||||
for (i = 0 ; i <= nbins ; i++)
|
||||
count[i][0] = count[i][1] = 0;
|
||||
increment = 1;
|
||||
}
|
||||
|
||||
len = seq->fasta->length;
|
||||
|
||||
for (i = from ; i < to ; i++) {
|
||||
|
||||
int mask = seq->cell[i % len].mask;
|
||||
if (mask & EXCLUDE_MASK)
|
||||
continue;
|
||||
|
||||
int index = seq->cell[i % len].index;
|
||||
if ((index < 0) || (index > nbins)) /* other symbol */
|
||||
index = nbins;
|
||||
|
||||
if (mask & DIRECT_MASK)
|
||||
count[index][0] += increment;
|
||||
if (mask & REVERSE_MASK)
|
||||
count[index][1] += increment;
|
||||
}
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* counting skewed codon */
|
||||
/* note: don't forget to init counter before */
|
||||
/* InitCodonSkewCounter(code) */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void InitCodonSkewCounter(int code) {
|
||||
CodonSkew(code, sCodonScore);
|
||||
sScoreInited = 1;
|
||||
}
|
||||
|
||||
void CodonSkewCounter(Sequence *seq, int from, int to,
|
||||
int count[][2], int nbins, int increment) {
|
||||
|
||||
int i, len;
|
||||
|
||||
if (! sScoreInited) {
|
||||
Erreur("CodonSkewCounter: initialized with default genetic code", 0);
|
||||
InitCodonSkewCounter(GEN_CODE_UNIVL);
|
||||
}
|
||||
|
||||
if (increment == 0) { /* this is a reset */
|
||||
for (i = 0 ; i <= nbins ; i++)
|
||||
count[i][0] = count[i][1] = 0;
|
||||
increment = 1;
|
||||
}
|
||||
|
||||
len = seq->fasta->length;
|
||||
|
||||
for (i = from ; i < to ; i++) {
|
||||
|
||||
int mask = seq->cell[i % len].mask;
|
||||
if (mask & EXCLUDE_MASK)
|
||||
continue;
|
||||
|
||||
int index = seq->cell[i % len].index; /* codon index */
|
||||
if ((index < 0) || (index > NB_CODONS)) /* invalid codon */
|
||||
continue;
|
||||
|
||||
int strand = ((mask & DIRECT_MASK) ? 0 : 1);
|
||||
|
||||
int nuc;
|
||||
for (nuc = 0 ; nuc < NB_NUC ; nuc++) {
|
||||
|
||||
float score = sCodonScore[nuc][index]; /* enrichment for symbol nuc */
|
||||
|
||||
/* ---------------------------------------------------------------- */
|
||||
/* important property : */
|
||||
/* if codon causes enrichment/depletion in X and if the gene is */
|
||||
/* located on the reverse strand then choice of this codon causes */
|
||||
/* enrichment/depletion in ~X on the direct strand. */
|
||||
/* Therefore for reverse strand codons we should increment the bin */
|
||||
/* associated to ~X */
|
||||
/* */
|
||||
|
||||
int bin = nuc;
|
||||
|
||||
if (mask & REVERSE_MASK) {
|
||||
char compl = BaseComplement(seq->alphabet->symbol[nuc]);
|
||||
bin = AlphaIndex(seq->alphabet, compl);
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------------------- */
|
||||
/* increment bin associated to null, enrichment, depletion */
|
||||
|
||||
bin = 3 * bin + ((score == 0.) ? 0 : ((score > 0) ? 1 : 2));
|
||||
|
||||
count[bin][strand] += increment;
|
||||
}
|
||||
|
||||
count[3 * NB_NUC][strand] += increment; /* total # codons */
|
||||
}
|
||||
|
||||
}
|
||||
Executable
+142
@@ -0,0 +1,142 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_distance.c */
|
||||
/* general utilities functions */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
#include <math.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
#define SQRTF(x) (float) sqrt((float) x)
|
||||
#define FABSF(x) (float) fabs((float) x)
|
||||
|
||||
/* ---------------------- */
|
||||
/* API */
|
||||
/* ---------------------- */
|
||||
|
||||
/*
|
||||
* for all distance functions :
|
||||
* int bins1[], int bins2[] : count distributions
|
||||
* int nbins : total number of bins
|
||||
* int ibin : if < 0 : compute distance using all bins
|
||||
* : if >= 0 : compute distance only for ibin (partial distance)
|
||||
*/
|
||||
|
||||
/* ---------------------- */
|
||||
/* chisquare distance */
|
||||
|
||||
float ChisTwo(int bins1[], int bins2[], int nbins, int ibin)
|
||||
{
|
||||
int j, jmin, jmax;
|
||||
float num, s1, s2, c1, c2, sj, dist;
|
||||
|
||||
s1 = s2 = 0.;
|
||||
for (j = 0 ; j < nbins ; j++) {
|
||||
s1 += bins1[j];
|
||||
s2 += bins2[j];
|
||||
}
|
||||
|
||||
if (s1 == 0.) s1 = 1.0;
|
||||
if (s2 == 0.) s2 = 1.0;
|
||||
|
||||
c1 = SQRTF(s2/s1);
|
||||
c2 = SQRTF(s1/s2);
|
||||
|
||||
jmin = (ibin < 0 ? 0 : ibin);
|
||||
jmax = (ibin < 0 ? nbins : ibin + 1);
|
||||
|
||||
dist = 0.0;
|
||||
|
||||
for (j = jmin ; j < jmax ; j++) {
|
||||
sj = bins1[j] + bins2[j];
|
||||
if (sj == 0.) sj = 1.;
|
||||
num = (c1 * (float) bins1[j]) - (c2 * (float) bins2[j]);
|
||||
dist += (num * num) / sj;
|
||||
}
|
||||
|
||||
return SQRTF(dist);
|
||||
}
|
||||
|
||||
/* ---------------------- */
|
||||
/* euclidian distance */
|
||||
|
||||
float Euclid(int bins1[], int bins2[], int nbins, int ibin)
|
||||
{
|
||||
int j, jmin, jmax;
|
||||
float num, s1, s2, dist;
|
||||
|
||||
s1 = s2 = 0.;
|
||||
for (j = 0 ; j < nbins ; j++) {
|
||||
s1 += bins1[j];
|
||||
s2 += bins2[j];
|
||||
}
|
||||
|
||||
if (s1 == 0.) s1 = 1.0;
|
||||
if (s2 == 0.) s2 = 1.0;
|
||||
|
||||
jmin = (ibin < 0 ? 0 : ibin);
|
||||
jmax = (ibin < 0 ? nbins : ibin + 1);
|
||||
|
||||
dist = 0.0;
|
||||
|
||||
for (j = jmin ; j < jmax ; j++) {
|
||||
num = ((float) bins1[j]/s1) - ((float) bins2[j]/s2);
|
||||
dist += num*num;
|
||||
}
|
||||
|
||||
return SQRTF(dist);
|
||||
}
|
||||
|
||||
/* ---------------------- */
|
||||
/* hellinger distance */
|
||||
|
||||
float HellTwo(int bins1[], int bins2[], int nbins, int ibin)
|
||||
{
|
||||
int j, jmin, jmax;
|
||||
float num, s1, s2, dist;
|
||||
|
||||
s1 = s2 = 0.;
|
||||
for (j = 0 ; j < nbins ; j++) {
|
||||
s1 += bins1[j];
|
||||
s2 += bins2[j];
|
||||
}
|
||||
|
||||
if (s1 == 0.) s1 = 1.0;
|
||||
if (s2 == 0.) s2 = 1.0;
|
||||
|
||||
jmin = (ibin < 0 ? 0 : ibin);
|
||||
jmax = (ibin < 0 ? nbins : ibin + 1);
|
||||
|
||||
dist = 0.0;
|
||||
|
||||
for (j = jmin ; j < jmax ; j++) {
|
||||
num = SQRTF((float) bins1[j]/s1) - SQRTF((float) bins2[j]/s2);
|
||||
dist += num*num;
|
||||
}
|
||||
|
||||
return SQRTF(dist);
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* compute skew sign for two-binned data */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
int SignTwoBins(int bins1[], int bins2[]) {
|
||||
|
||||
int s1, s2;
|
||||
|
||||
s1 = bins1[0] + bins1[1];
|
||||
s2 = bins2[0] + bins2[1];
|
||||
|
||||
if (s1 == 0) s1 = 1;
|
||||
if (s2 == 0) s2 = 1;
|
||||
|
||||
return ( (((float) bins1[0] / (float) s1) >= ((float) bins2[0] / (float) s2))
|
||||
? 1 : -1);
|
||||
}
|
||||
@@ -0,0 +1,109 @@
|
||||
/* ---------------------------------------------------------------- */
|
||||
/* Copyright (c) Atelier de BioInformatique */
|
||||
/* @file: kim_genetic.c */
|
||||
/* @desc: bio. sequences utility functions */
|
||||
/* */
|
||||
/* @history: */
|
||||
/* @+ <Gloup> : Jan 96 : quick draft */
|
||||
/* ---------------------------------------------------------------- */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
#define GENETIC_CODE_INSTANCE
|
||||
#include "Genetic.h"
|
||||
|
||||
static char sNuc[] = DNA_ALPHA;
|
||||
static char sAnuc[] = C_DNA_ALPHA;
|
||||
static char sGenNuc[] = GEN_NUC_ALPHA;
|
||||
static char sGenPro[] = GEN_PRO_ALPHA;
|
||||
static int sNucNum[5] = {0, 1, 2, 3, 3};
|
||||
|
||||
/* ---------------------------------------------------- */
|
||||
/* @Function : int BaseComplement */
|
||||
/* Purpose : return DNA/RNA-Iupac base complement */
|
||||
/* ---------------------------------------------------- */
|
||||
int BaseComplement(int ch)
|
||||
{
|
||||
char *c;
|
||||
|
||||
if (c = strchr(sNuc, ch))
|
||||
return sAnuc[(int) (c - sNuc)];
|
||||
else
|
||||
return ch;
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------- */
|
||||
/* @Function : char * SeqComplement */
|
||||
/* Purpose : return sequence complement */
|
||||
/* ---------------------------------------------------- */
|
||||
char *SeqComplement(char *str)
|
||||
{
|
||||
char *s;
|
||||
|
||||
for (s = str ; *s ; s++)
|
||||
*s = BaseComplement(*s);
|
||||
|
||||
return str;
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------- */
|
||||
/* @Static : int * sTranslateCodon */
|
||||
/* Purpose : translate codon -> aa */
|
||||
/* see bio_codon_translate */
|
||||
/* ---------------------------------------------------- */
|
||||
static int sTranslateCodon(char *codon, int *code)
|
||||
{
|
||||
int i, base, hash;
|
||||
char *p;
|
||||
|
||||
for (i = hash = 0 ; i < 3 ; i++) {
|
||||
if ((p = strchr(sGenNuc, *codon++)) != NULL) {
|
||||
base = ((int) (p - sGenNuc)) / 2;
|
||||
hash = (hash * 4) + sNucNum[base];
|
||||
}
|
||||
else {
|
||||
hash = 64; /* bad letter in codon */
|
||||
break; /* or incomplete codon */
|
||||
}
|
||||
}
|
||||
return (int) sGenPro[code[hash]];
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------- */
|
||||
/* @Function : int * CodonTranslate */
|
||||
/* Purpose : return amino-acid */
|
||||
/* input: codon char* 3 bases (in GEN_NUC_ALPHA) */
|
||||
/* codid int (see Genetic.h) */
|
||||
/* output: aa in one letter code (in GEN_PRO_ALPHA) */
|
||||
/* ---------------------------------------------------- */
|
||||
int CodonTranslate(char *codon, int codid)
|
||||
{
|
||||
return sTranslateCodon(codon, theGeneticCode[codid].code);
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------- */
|
||||
/* @Function : int * SeqTranslate */
|
||||
/* Purpose : translate sequence to protein */
|
||||
/* ---------------------------------------------------- */
|
||||
char* SeqTranslate(char *seq, int codid)
|
||||
{
|
||||
int *code;
|
||||
char *ps, *ns;
|
||||
|
||||
if ((codid < 0) || (codid >= GEN_MAX_CODES))
|
||||
return NULL;
|
||||
|
||||
code = theGeneticCode[codid].code;
|
||||
|
||||
for (ns = ps = seq ; ns[0] && ns[1] && ns[2] ; ns += 3)
|
||||
*ps++ = sTranslateCodon(ns, code);
|
||||
|
||||
*ps = '\000';
|
||||
|
||||
return seq;
|
||||
}
|
||||
|
||||
Executable
+309
@@ -0,0 +1,309 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_indexer.c */
|
||||
/* indexing functions */
|
||||
/* @history: */
|
||||
/* @+ Jul. 06 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* internal functions */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* codon index */
|
||||
/* codon: start of codon sequence */
|
||||
/* read left to right for direct strand */
|
||||
/* right to left for reverse strand */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sCodonIndex(char *codon, Alphabet *alpha, int strand)
|
||||
{
|
||||
int i, code;
|
||||
|
||||
code = 0;
|
||||
|
||||
for (i = 0 ; i < 3 ; i++) { /* loop on codon positions */
|
||||
|
||||
char symb;
|
||||
|
||||
if (strand > 0) {
|
||||
symb = codon[i]; /* move to left */
|
||||
}
|
||||
else {
|
||||
symb = codon[-i]; /* move to right */
|
||||
symb = BaseComplement(symb); /* complement */
|
||||
}
|
||||
|
||||
int k = AlphaIndex(alpha, symb);
|
||||
|
||||
if (k < 0)
|
||||
return -1; /* invalid symbol */
|
||||
|
||||
code = (code << SHIFT_NUC) | k; /* encode codon */
|
||||
}
|
||||
|
||||
return code;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* basic sequence indexing */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static void sBasicIndexer(Sequence *seq) {
|
||||
int i;
|
||||
for (i = 0 ; i < seq->fasta->length ; i++) {
|
||||
seq->cell[i].index = AlphaIndex(seq->alphabet, seq->fasta->seq[i]);
|
||||
}
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* reset mask */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static void sSetMask(Sequence *seq, int mask) {
|
||||
int i;
|
||||
for (i = 0 ; i < seq->fasta->length ; i++) {
|
||||
seq->cell[i].mask = mask;
|
||||
}
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* mask masked symbol positions */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static void sMaskMaskedSymbol(Sequence *seq) {
|
||||
int i;
|
||||
for (i = 0 ; i < seq->fasta->length ; i++) {
|
||||
if (seq->fasta->seq[i] == MASKED_SYMBOL)
|
||||
seq->cell[i].mask |= EXCLUDE_MASK;
|
||||
}
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* mask overlaps */
|
||||
/* there is an overlap when a position is both on */
|
||||
/* direct and reverse strand. */
|
||||
/* this situation makes trouble since the index is */
|
||||
/* wrong on one strand. */
|
||||
/* note [AV] : overlaps on the same strand are not */
|
||||
/* detected yet but this situation is */
|
||||
/* not such a big trouble. */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static void sMaskOverlap(Sequence *seq) {
|
||||
int i;
|
||||
for (i = 0 ; i < seq->fasta->length ; i++) {
|
||||
if (seq->cell[i].mask & (DIRECT_MASK & REVERSE_MASK))
|
||||
seq->cell[i].mask |= EXCLUDE_MASK;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* API */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* no zone indexing */
|
||||
/* (no strand, no phase) */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void NoZoneIndexer(Sequence *seq, SetOfIntervals *zones, int phase) {
|
||||
/*ARGSUSED*/
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* assume everything is direct */
|
||||
|
||||
sSetMask(seq, DIRECT_MASK);
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* exclude masked symbol */
|
||||
|
||||
sMaskMaskedSymbol(seq);
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* just use basic indexer */
|
||||
|
||||
sBasicIndexer(seq);
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* zone exclusion indexing */
|
||||
/* (no strand, no phase) */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void ExcludeIndexer(Sequence *seq, SetOfIntervals *zones, int phase) {
|
||||
/*ARGSUSED*/
|
||||
|
||||
int i, j;
|
||||
Interval inter;
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* assume everything is direct */
|
||||
|
||||
sSetMask(seq, DIRECT_MASK);
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* mask zone positions */
|
||||
|
||||
for (i = 0; i < zones->size ; i++) {
|
||||
inter = zones->interval[i];
|
||||
for (j = inter.from ; j <= inter.to ; j++)
|
||||
seq->cell[j].mask |= EXCLUDE_MASK;
|
||||
}
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* exclude masked symbol */
|
||||
|
||||
sMaskMaskedSymbol(seq);
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* then use basic indexer */
|
||||
|
||||
sBasicIndexer(seq);
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* gene indexing */
|
||||
/* (strand, no phase) */
|
||||
/* note: alpha is unused */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void GeneIndexer(Sequence *seq, SetOfIntervals *zones, int phase) {
|
||||
/*ARGSUSED*/
|
||||
|
||||
int i;
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* first reset mask, excluding all */
|
||||
|
||||
sSetMask(seq, EXCLUDE_MASK);
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* then unmask start of genes */
|
||||
|
||||
for (i = 0; i < zones->size ; i++) {
|
||||
Interval inter = zones->interval[i];
|
||||
int pos = (inter.strand > 0 ? inter.from : inter.to);
|
||||
int mask = (inter.strand > 0 ? DIRECT_MASK : REVERSE_MASK);
|
||||
seq->cell[pos].mask = (seq->cell[pos].mask & INCLUDE_MASK) | mask;
|
||||
seq->cell[pos].index = (inter.strand > 0 ? 0 : 1);
|
||||
}
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* finally, exclude overlaps */
|
||||
/* when two genes start at same pos */
|
||||
|
||||
sMaskOverlap(seq);
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* phased nucleotide indexing */
|
||||
/* phase: binary mask indicating valid phases */
|
||||
/* 1[01] : 1 ; 2[10] : 2 ; 4[100] : 3 */
|
||||
/* or any combination eg: 3[11] : 12 */
|
||||
/* 7[111] : 123 */
|
||||
/* ----------------------------------------------- */
|
||||
void PhaseIndexer(Sequence *seq, SetOfIntervals *zones, int phase) {
|
||||
/*ARGSUSED*/
|
||||
|
||||
int i, j;
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* first reset mask, excluding all */
|
||||
|
||||
sSetMask(seq, EXCLUDE_MASK);
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* then unmask valid positions */
|
||||
|
||||
for (i = 0; i < zones->size ; i++) {
|
||||
Interval inter = zones->interval[i];
|
||||
int iphase = 0;
|
||||
if (inter.strand > 0) {
|
||||
for (j = inter.from ; j <= inter.to ; j++) {
|
||||
if (((0x1 << iphase) & phase) != 0)
|
||||
seq->cell[j].mask = (seq->cell[j].mask & INCLUDE_MASK) | DIRECT_MASK;
|
||||
iphase = (iphase + 1) % 3;
|
||||
}
|
||||
}
|
||||
else {
|
||||
for (j = inter.to ; j >= inter.from ; j--) {
|
||||
if (((0x1 << iphase) & phase) != 0)
|
||||
seq->cell[j].mask = (seq->cell[j].mask & INCLUDE_MASK) | REVERSE_MASK;
|
||||
iphase = (iphase + 1) % 3;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* exclude masked symbol */
|
||||
|
||||
sMaskMaskedSymbol(seq);
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* exclude overlaps */
|
||||
|
||||
sMaskOverlap(seq);
|
||||
|
||||
/* ------------------------------------------ */
|
||||
/* finally, use basic indexer */
|
||||
|
||||
sBasicIndexer(seq);
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* codon indexing */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void CodonIndexer(Sequence *seq, SetOfIntervals *zones, int phase) {
|
||||
int i, j;
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* reset mask, excluding all */
|
||||
|
||||
sSetMask(seq, EXCLUDE_MASK);
|
||||
|
||||
/* ------------------------------------------ */
|
||||
/* now unmask phase 1 and compute codon index */
|
||||
|
||||
for (i = 0; i < zones->size ; i++) {
|
||||
Interval inter = zones->interval[i];
|
||||
int iphase = 0;
|
||||
if (inter.strand > 0) {
|
||||
for (j = inter.from ; j <= inter.to - 2 ; j++) { // ZZ to - 2
|
||||
if (iphase == 0) {
|
||||
int k = sCodonIndex(seq->fasta->seq + j, seq->alphabet, 1);
|
||||
seq->cell[j].mask = (seq->cell[j].mask & INCLUDE_MASK) | DIRECT_MASK;
|
||||
seq->cell[j].index = k;
|
||||
}
|
||||
iphase = (iphase + 1) % 3;
|
||||
}
|
||||
}
|
||||
else {
|
||||
for (j = inter.to ; j >= inter.from + 2 ; j--) { // ZZ from + 2
|
||||
if (iphase == 0) {
|
||||
int k = sCodonIndex(seq->fasta->seq + j, seq->alphabet, -1);
|
||||
seq->cell[j].mask = (seq->cell[j].mask & INCLUDE_MASK) | REVERSE_MASK;
|
||||
seq->cell[j].index = k;
|
||||
}
|
||||
iphase = (iphase + 1) % 3;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/* ---------------------------------- */
|
||||
/* exclude overlaps */
|
||||
|
||||
sMaskOverlap(seq);
|
||||
|
||||
}
|
||||
|
||||
|
||||
Executable
+56
@@ -0,0 +1,56 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_mixer.c */
|
||||
/* count mixing functions */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* basic mixer */
|
||||
/* */
|
||||
/* this mixer just pool the two strands on both */
|
||||
/* sides */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void BasicMixer(int left[][2], int right[][2],
|
||||
int *countLeft, int *countRight,
|
||||
int nbins) {
|
||||
int i;
|
||||
|
||||
for (i = 0 ; i <= nbins ; i++)
|
||||
countLeft[i] = countRight[i] = 0;
|
||||
|
||||
for (i = 0 ; i <= nbins ; i++) {
|
||||
countLeft[i] += left[i][0] + left[i][1]; /* leftDirect + leftReverse */
|
||||
countRight[i] += right[i][0] + right[i][1]; /* rightDirect + rightReverse */
|
||||
}
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* cross mixer */
|
||||
/* */
|
||||
/* this mixer cross the two strands on both */
|
||||
/* sides */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
void CrossMixer(int left[][2], int right[][2],
|
||||
int *countLeft, int *countRight,
|
||||
int nbins) {
|
||||
int i;
|
||||
|
||||
for (i = 0 ; i <= nbins ; i++)
|
||||
countLeft[i] = countRight[i] = 0;
|
||||
|
||||
for (i = 0 ; i <= nbins ; i++) {
|
||||
countLeft[i] += left[i][0] + right[i][1]; /* leftDirect + rightReverse */
|
||||
countRight[i] += right[i][0] + left[i][1]; /* rightDirect + leftReverse */
|
||||
}
|
||||
}
|
||||
|
||||
Executable
+87
@@ -0,0 +1,87 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_sequence.c */
|
||||
/* sequence handling */
|
||||
/* @history: */
|
||||
/* @+ Jul. 06 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* internal functions */
|
||||
/* -------------------------------------------- */
|
||||
static int sReallocCells(Sequence *seq) {
|
||||
SeqCell *buf;
|
||||
|
||||
buf = ( seq->cell
|
||||
? REALLOC(SeqCell, seq->cell, seq->fasta->length)
|
||||
: NEWN(SeqCell, seq->fasta->length));
|
||||
|
||||
if (! buf) {
|
||||
MemoryErreur("NewSequence", 2);
|
||||
return 0;
|
||||
}
|
||||
|
||||
seq->cell = buf;
|
||||
return 1;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* API */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* Sequence deallocation */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
Sequence *FreeSequence(Sequence *seq) {
|
||||
if (seq) {
|
||||
if (seq->alphabet) FreeAlphabet(seq->alphabet);
|
||||
if (seq->fasta) FreeFastaSequence(seq->fasta);
|
||||
if (seq->cell) FREE(seq->cell);
|
||||
FREE(seq);
|
||||
}
|
||||
return NULL;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* Sequence allocation */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
Sequence *NewSequence(Alphabet *alpha) {
|
||||
Sequence *seq;
|
||||
|
||||
if (! (seq = NEW(Sequence)))
|
||||
MemoryErreur("NewSequence", 2);
|
||||
|
||||
seq->alphabet = NULL;
|
||||
seq->fasta = NULL;
|
||||
seq->cell = NULL;
|
||||
|
||||
if (! (seq->alphabet = CopyAlphabet(alpha)))
|
||||
MemoryErreur("NewSequence", 2);
|
||||
|
||||
if (! (seq->fasta = NewFastaSequence()))
|
||||
MemoryErreur("NewSequence", 2);
|
||||
|
||||
return seq;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* read sequence */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
int ReadSequence(FILE *streamin, Sequence *seq) {
|
||||
int ok;
|
||||
|
||||
ok = ReadFastaSequence(streamin, seq->fasta)
|
||||
&& seq->fasta->ok
|
||||
&& sReallocCells(seq);
|
||||
|
||||
return ok;
|
||||
}
|
||||
Executable
+82
@@ -0,0 +1,82 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_util.c */
|
||||
/* general utilities functions */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* error reporting */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
int Erreur(char *msg, int stat)
|
||||
{
|
||||
|
||||
fprintf(stderr, "*%s* [%d] %s\n", (stat > 0 ? "Error" : "Warning"),
|
||||
stat, msg);
|
||||
|
||||
if (stat > 0)
|
||||
exit(stat);
|
||||
|
||||
fflush(stderr);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* memory error */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
int MemoryErreur(char *where, int stat)
|
||||
{
|
||||
char buffer[BUFSIZ];
|
||||
|
||||
sprintf(buffer, "Not enough memory in %s", where);
|
||||
|
||||
return Erreur(buffer, stat);
|
||||
}
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* open a file and assign it to stdin */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
int AssignToStdin(char *filename)
|
||||
{
|
||||
char buffer[256];
|
||||
|
||||
if (! freopen(filename, "r", stdin)) {
|
||||
sprintf(buffer, "cant open file %s to read", filename);
|
||||
return Erreur(buffer, -1);
|
||||
}
|
||||
|
||||
return 1;
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------- */
|
||||
/* Trim leading spaces from string 'str' */
|
||||
/* ---------------------------------------------------- */
|
||||
char *StrTrimLeading(char *str)
|
||||
{
|
||||
char *sb, *sn;
|
||||
|
||||
if (! (str && isspace(*str)))
|
||||
return str;
|
||||
|
||||
for (sb = sn = str ; isspace(*sn) ; sn++)
|
||||
/* nop */ ;
|
||||
|
||||
while (*sn)
|
||||
*sb++ = *sn++;
|
||||
|
||||
*sb = '\000';
|
||||
|
||||
return str;
|
||||
}
|
||||
|
||||
Executable
+98
@@ -0,0 +1,98 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_zone.c */
|
||||
/* zones handling */
|
||||
/* @history: */
|
||||
/* @+ Jul. 06 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* internal functions */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* API */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* free zones */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
SetOfIntervals *FreeZones(SetOfIntervals *set) {
|
||||
|
||||
if (set) {
|
||||
if (set->interval)
|
||||
FREE(set->interval);
|
||||
FREE(set);
|
||||
}
|
||||
|
||||
return NULL;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* read zones */
|
||||
/* note: zones are read as 1-based intervals */
|
||||
/* but stored as 0-based intervals */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
SetOfIntervals *ReadZones(int seqlength) {
|
||||
|
||||
int from, to;
|
||||
SetOfIntervals *set;
|
||||
Interval *tbuf;
|
||||
char buffer[BUFSIZ], err[BUFSIZ];
|
||||
char strand[2];
|
||||
|
||||
set = NEW(SetOfIntervals);
|
||||
set->capacity = 256; /* just to start with */
|
||||
set->size = 0;
|
||||
set->interval = NEWN(Interval, set->capacity);
|
||||
|
||||
while (fgets(buffer, sizeof(buffer), stdin)) {
|
||||
|
||||
StrTrimLeading(buffer);
|
||||
|
||||
if ( (*buffer == '#')
|
||||
|| (*buffer == '/')
|
||||
|| (strlen(buffer) == 0))
|
||||
continue;
|
||||
|
||||
if (sscanf(buffer, "%d%d%1s", &from, &to, strand) != 3) {
|
||||
(void) sprintf(err, "include buffer: invalid format : %s", buffer);
|
||||
Erreur(err, -1);
|
||||
// return FreeZones(set);
|
||||
continue;
|
||||
}
|
||||
|
||||
if ((from > to) || (from <= 0) || (to <= 0) || (to > seqlength)) {
|
||||
(void) sprintf(err, "include buffer: invalid from/to values : %s", buffer);
|
||||
Erreur(err, -1);
|
||||
// return FreeZones(set);
|
||||
continue;
|
||||
}
|
||||
|
||||
set->size++;
|
||||
|
||||
if (set->size >= set->capacity) {
|
||||
set->capacity *= 2;
|
||||
if (! (tbuf = REALLOC(Interval, set->interval, set->capacity))) {
|
||||
MemoryErreur("ReadZones", 2);
|
||||
return FreeZones(set);
|
||||
}
|
||||
set->interval = tbuf;
|
||||
}
|
||||
|
||||
tbuf = set->interval + set->size - 1;
|
||||
tbuf->from = from - 1;
|
||||
tbuf->to = to - 1;
|
||||
tbuf->strand = (strcmp(strand, "D") && strcmp(strand, "+") ? -1 : +1);
|
||||
}
|
||||
|
||||
return set;
|
||||
}
|
||||
Executable
+205
@@ -0,0 +1,205 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kimfit_main.c */
|
||||
/* triangle fit program */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
#include <math.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
#ifndef BUFSIZ
|
||||
#define BUFSIZ 1024
|
||||
#endif
|
||||
|
||||
#define NBEST 2
|
||||
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* look for best window on signal */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static float sLookBest(float *x, int n, int iwidth) {
|
||||
int i;
|
||||
float sum, best;
|
||||
|
||||
if (iwidth > n) iwidth = n;
|
||||
|
||||
sum = 0.;
|
||||
|
||||
for (i = 0 ; i < iwidth ; i++) {
|
||||
sum += x[i];
|
||||
}
|
||||
|
||||
best = sum;
|
||||
|
||||
for (i = 1 ; i < n ; i++) {
|
||||
|
||||
sum -= x[i-1];
|
||||
sum += x[(i+iwidth-1) % n];
|
||||
|
||||
if (sum > best)
|
||||
best = sum;
|
||||
|
||||
}
|
||||
|
||||
return best;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* fit triangle on signal */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sFitTriangle(float *x, int n, int iwidth, float height) {
|
||||
int i, j, fitpos;
|
||||
|
||||
if (iwidth <= 1) iwidth = 2;
|
||||
|
||||
/* -------------------------- */
|
||||
/* fit sliding triangle */
|
||||
|
||||
for (i = 0 ; i < n ; i++) {
|
||||
|
||||
int j;
|
||||
float sum, fitval;
|
||||
|
||||
sum = 0.;
|
||||
|
||||
for (j = 0 ; j < iwidth ; j++) {
|
||||
int k = (j < iwidth/2 ? j : iwidth - j);
|
||||
float val = x[(i+j) % n] - (2. * (float) k / (float) iwidth * height);
|
||||
sum += val * val;
|
||||
}
|
||||
|
||||
if ((i == 0) || (sum < fitval)) {
|
||||
fitval = sum;
|
||||
fitpos = i;
|
||||
}
|
||||
}
|
||||
|
||||
fitpos = (fitpos + (iwidth /2)) % n;
|
||||
|
||||
return fitpos;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* zero signal */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static void sZero(float *x, int from, int to, int n) {
|
||||
int i;
|
||||
|
||||
for (i = from ; i < to ; i++) {
|
||||
x[(i+n) % n] = 0.;
|
||||
}
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* integrate signal */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static float sIntegrate(float *x, int from, int to, int n) {
|
||||
int i;
|
||||
float sum;
|
||||
|
||||
sum = 0.;
|
||||
for (i = from ; i < to ; i++) {
|
||||
sum += x[(i+n) % n];
|
||||
}
|
||||
|
||||
return sum;
|
||||
}
|
||||
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* main */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
main() {
|
||||
|
||||
int i, npt, nread, seqlength, window, iwidth;
|
||||
float sum, tsum, best;
|
||||
float *x, *xx;
|
||||
char buffer[BUFSIZ];
|
||||
|
||||
/* --------------------------------------------- */
|
||||
/* first line : npt, seqlength, window */
|
||||
|
||||
fgets(buffer, sizeof(buffer), stdin);
|
||||
|
||||
if ( (sscanf(buffer, "%d%d%d", &npt, &seqlength, &window) != 3)
|
||||
|| ((npt <= 0) || (seqlength <= 0) || (window <= 0))) {
|
||||
fprintf(stderr, "bad header (npt seqlength window) %s\n", buffer);
|
||||
exit(1);
|
||||
}
|
||||
|
||||
/* --------------------------------------------- */
|
||||
/* allocate buffer */
|
||||
|
||||
if (! (x = NEWN(float, npt))) {
|
||||
MemoryErreur("main", 2);
|
||||
}
|
||||
|
||||
if (! (xx = NEWN(float, npt))) {
|
||||
MemoryErreur("main", 2);
|
||||
}
|
||||
|
||||
/* --------------------------------------------- */
|
||||
/* other lines : data */
|
||||
|
||||
nread = 0;
|
||||
while (fscanf(stdin, "%f", x + nread) == 1) {
|
||||
if (nread > npt) {
|
||||
(void) sprintf(buffer, "too many points (declared=%d)", npt);
|
||||
Erreur(buffer, 3);
|
||||
}
|
||||
nread++;
|
||||
}
|
||||
|
||||
if (nread != npt) {
|
||||
(void) sprintf(buffer, "number of points does not match : declared=%d actual=%d", npt, nread);
|
||||
Erreur(buffer, 0);
|
||||
}
|
||||
|
||||
/* --------------------------------------------- */
|
||||
/* print header */
|
||||
|
||||
printf("seqlength : %d\n", seqlength);
|
||||
printf("window : %d\n", window);
|
||||
|
||||
/* --------------------------------------------- */
|
||||
/* fit */
|
||||
|
||||
iwidth = (int) ((float) window * (float) npt / (float) seqlength);
|
||||
|
||||
sum = sIntegrate(x, 0, npt, npt);
|
||||
|
||||
for (i = 1 ; i < npt ; i++)
|
||||
xx[i] = x[i];
|
||||
|
||||
|
||||
for (i = 0 ; i < NBEST ; i++) {
|
||||
|
||||
tsum = sLookBest(xx, npt, iwidth);
|
||||
|
||||
best = sFitTriangle(xx, npt, iwidth, tsum / (iwidth /2));
|
||||
|
||||
tsum = sIntegrate(x, best - iwidth/2, best + iwidth/2, npt);
|
||||
|
||||
best = sFitTriangle(xx, npt, iwidth, tsum / (iwidth /2));
|
||||
|
||||
tsum = sIntegrate(x, best - iwidth/2, best + iwidth/2, npt);
|
||||
|
||||
sZero(xx, best - iwidth/2, best + iwidth/2, npt);
|
||||
|
||||
printf("best[%d] : %.0f %.0f %.2f\n", i, best, 1 + best * (float) seqlength / (float) npt,
|
||||
tsum * 100. / sum);
|
||||
}
|
||||
|
||||
exit(0);
|
||||
}
|
||||
Executable
+132
@@ -0,0 +1,132 @@
|
||||
/* ==================================================== */
|
||||
/* @file: kim_help.c */
|
||||
/* Help & usage */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <AV> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <ctype.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "kimono.h"
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* printout help */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
#define PP fprintf(stdout,
|
||||
|
||||
void PrintHelp()
|
||||
{
|
||||
PP "------------------------------------------ \n");
|
||||
PP " Kimono Version 0.2 Nov. 05 \n");
|
||||
PP "------------------------------------------ \n");
|
||||
PP "synopsis : \n");
|
||||
PP " \n");
|
||||
PP "usage: kimono [options] [fastafile] \n");
|
||||
PP "------------------------------------------ \n");
|
||||
PP "options: \n");
|
||||
PP "----- General options ------------------ \n");
|
||||
PP "-a string : use symbols from string as [A]lphabet\n");
|
||||
PP " default = acgt \n");
|
||||
PP " \n");
|
||||
PP "-b string : exclude symbols from string \n");
|
||||
PP " in practice replace symbols from \n");
|
||||
PP " string by X's \n");
|
||||
PP " default = <none> \n");
|
||||
PP " \n");
|
||||
PP "-c selector : use selector as [C]ount selector \n");
|
||||
PP " selector: \n");
|
||||
PP " count : counts symbols \n");
|
||||
PP " cumul : cumulative plot \n");
|
||||
PP " codon : count codons \n");
|
||||
PP " genes : count genes \n");
|
||||
PP " default = count \n");
|
||||
PP " \n");
|
||||
PP "-e code : g[E]netic code \n");
|
||||
PP " code: \n");
|
||||
PP " 0 : Universal \n");
|
||||
PP " 1 : mito yeast \n");
|
||||
PP " 2 : mito vertebrate \n");
|
||||
PP " 3 : filamentous fungi \n");
|
||||
PP " 4 : mito insects & platyhelminthes\n");
|
||||
PP " 5 : Candida cylindracea \n");
|
||||
PP " 6 : Ciliata \n");
|
||||
PP " 7 : Euplotes \n");
|
||||
PP " 8 : mito echinoderms \n");
|
||||
PP " default = 0 \n");
|
||||
PP " \n");
|
||||
PP "-d selector : use selector as [D]istance \n");
|
||||
PP " selector: \n");
|
||||
PP " chi : chi square distance \n");
|
||||
PP " hell : hellinger distance \n");
|
||||
PP " euclid : euclidian distance \n");
|
||||
PP " default = chi \n");
|
||||
PP " \n");
|
||||
PP "-h : [H]elp - print <this> help \n");
|
||||
PP " \n");
|
||||
PP "-i filename : genes [I]nclude file \n");
|
||||
PP " default = <none> \n");
|
||||
PP " \n");
|
||||
PP "-m selector : use selector as [M]ixer \n");
|
||||
PP " selector: \n");
|
||||
PP " basic : basic mixer \n");
|
||||
PP " cross : cross strands mixer \n");
|
||||
PP " default = basic \n");
|
||||
PP " \n");
|
||||
PP "-p [1[2[3]]] : [P]hase(s) for counts \n");
|
||||
PP " default = <nophase> \n");
|
||||
PP " \n");
|
||||
PP "-P [1[2[3]]] : [P]hase(s) for counts \n");
|
||||
PP " same as -p + base complement on \n");
|
||||
PP " reverse strand \n");
|
||||
PP " default = <nophase> <nocomplement>\n");
|
||||
PP " \n");
|
||||
PP "-s step : window [S]tep in bp \n");
|
||||
PP " default = 1000 \n");
|
||||
PP " \n");
|
||||
PP "-w width : window [W]idth in bp \n");
|
||||
PP " default = <see -W> \n");
|
||||
PP " \n");
|
||||
PP "-W %%width : window [W]idth in %% of chromosome length\n");
|
||||
PP " default = 25%% \n");
|
||||
PP " \n");
|
||||
PP "-x filename : genes e[X]clude file \n");
|
||||
PP " default = <none> \n");
|
||||
PP " \n");
|
||||
PP "------------------------------------------ \n");
|
||||
PP "file formats \n");
|
||||
PP " \n");
|
||||
PP "fastafile: fasta format \n");
|
||||
PP "include/exclude files: one gene per line : \n");
|
||||
PP " from to strand [comments] \n");
|
||||
PP " from, to : integers (from <= to) \n");
|
||||
PP " strand : C|D|+|- \n");
|
||||
PP "-------------------------------- \n");
|
||||
PP " see documentation for more information \n");
|
||||
PP "-------------------------------- \n");
|
||||
PP " \n");
|
||||
}
|
||||
|
||||
#undef PP
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* printout usage and exit */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
#define PP fprintf(stderr,
|
||||
|
||||
int ExitUsage(int stat)
|
||||
{
|
||||
PP "usage: \n");
|
||||
PP "type \"kimono -h\" for help \n");
|
||||
|
||||
if (stat)
|
||||
exit(stat);
|
||||
|
||||
return stat;
|
||||
}
|
||||
|
||||
#undef PP
|
||||
Executable
+800
@@ -0,0 +1,800 @@
|
||||
/* ==================================================== */
|
||||
/* @File kimono_main.c */
|
||||
/* @history: */
|
||||
/* @+ Apr. 97 <Gloup> first draft */
|
||||
/* ==================================================== */
|
||||
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
|
||||
#include "Genetic.h"
|
||||
#include "fasta_io.h"
|
||||
#include "kimono.h"
|
||||
|
||||
#ifdef HAS_UNISTD_H
|
||||
#include HAS_UNISTD_H
|
||||
#endif
|
||||
|
||||
#ifdef HAS_GETOPT_H
|
||||
#include HAS_GETOPT_H
|
||||
#endif
|
||||
|
||||
#ifndef FILENAME_MAX
|
||||
#define FILENAME_MAX 1024 /* max # of characters in a path name */
|
||||
#endif
|
||||
|
||||
#ifndef BUFSIZ
|
||||
#define BUFSIZ 1024
|
||||
#endif
|
||||
|
||||
#define SELECTOR_NONE 0
|
||||
#define SELECTOR_COUNT 1
|
||||
#define SELECTOR_CUMUL 2
|
||||
#define SELECTOR_CODON 3
|
||||
#define SELECTOR_GENE 4
|
||||
|
||||
#define DISTANCE_NONE 0
|
||||
#define DISTANCE_CHI 1
|
||||
#define DISTANCE_EUCLID 2
|
||||
#define DISTANCE_HELL 3
|
||||
|
||||
#define MIXER_NONE 0
|
||||
#define MIXER_BASIC 1
|
||||
#define MIXER_CROSS 2
|
||||
|
||||
#define DFT_WINDOW -25 /* aka 25% */
|
||||
#define DFT_STEP 1000
|
||||
|
||||
#define CUMUL_NORM 1.0e6
|
||||
|
||||
#define DEBUG 0
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* macros */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* globals */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
static char sDNA[] = KIM_DNA;
|
||||
|
||||
static float sCodonScore[NB_NUC][NB_CODONS];
|
||||
|
||||
/* -------------------------------------------- */
|
||||
/* getopt globals */
|
||||
/* -------------------------------------------- */
|
||||
|
||||
extern char *optarg;
|
||||
extern int optind;
|
||||
|
||||
/* =============================================== */
|
||||
/* Utilities Functions */
|
||||
/* =============================================== */
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* make a count selector */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sSetSelector(char *buf) {
|
||||
|
||||
if (! strcmp(buf, "count"))
|
||||
return SELECTOR_COUNT;
|
||||
|
||||
if (! strcmp(buf, "cumul"))
|
||||
return SELECTOR_CUMUL;
|
||||
|
||||
if (! strcmp(buf, "codon"))
|
||||
return SELECTOR_CODON;
|
||||
|
||||
if (! strcmp(buf, "genes"))
|
||||
return SELECTOR_GENE;
|
||||
|
||||
return SELECTOR_NONE;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* get the count selector */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static char *sGetSelector(int selector) {
|
||||
|
||||
switch (selector) {
|
||||
|
||||
case SELECTOR_COUNT : return "count";
|
||||
case SELECTOR_CUMUL : return "cumul";
|
||||
case SELECTOR_CODON : return "codon";
|
||||
case SELECTOR_GENE : return "genes";
|
||||
|
||||
}
|
||||
|
||||
return "<unknown>";
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* make a distance selector */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sSetDistance(char *buf) {
|
||||
|
||||
if (! strcmp(buf, "chi"))
|
||||
return DISTANCE_CHI;
|
||||
|
||||
if (! strcmp(buf, "euclid"))
|
||||
return DISTANCE_EUCLID;
|
||||
|
||||
if (! strcmp(buf, "hell"))
|
||||
return DISTANCE_HELL;
|
||||
|
||||
return DISTANCE_NONE;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* get the count selector */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static char *sGetDistance(int selector) {
|
||||
|
||||
switch (selector) {
|
||||
|
||||
case DISTANCE_CHI : return "chi";
|
||||
case DISTANCE_EUCLID : return "euclid";
|
||||
case DISTANCE_HELL : return "hell";
|
||||
}
|
||||
|
||||
return "<unknown>";
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* make a mixer selector */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sSetMixer(char *buf) {
|
||||
|
||||
if (! strcmp(buf, "basic"))
|
||||
return MIXER_BASIC;
|
||||
|
||||
if (! strcmp(buf, "cross"))
|
||||
return MIXER_CROSS;
|
||||
|
||||
return MIXER_NONE;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* get the mixer selector */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static char *sGetMixer(int selector) {
|
||||
|
||||
switch (selector) {
|
||||
|
||||
case MIXER_BASIC : return "basic";
|
||||
case MIXER_CROSS : return "cross";
|
||||
}
|
||||
|
||||
return "<unknown>";
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* make a phase mask */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sGetPhaseMask(char *buf) {
|
||||
|
||||
int mask = 0x0;
|
||||
|
||||
if (strchr(buf, '1'))
|
||||
mask |= 0x1;
|
||||
|
||||
if (strchr(buf, '2'))
|
||||
mask |= 0x2;
|
||||
|
||||
if (strchr(buf, '3'))
|
||||
mask |= 0x4;
|
||||
|
||||
return mask;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* uppercase string */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static char *sUpper(char *buf) {
|
||||
|
||||
char *c;
|
||||
|
||||
for (c = buf ; *c ; c++) {
|
||||
*c = UPPER(*c);
|
||||
}
|
||||
|
||||
return buf;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* replace symbols in alphaOut by MASKED_SYMBOL */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static char *sExcludeFromSeq(char *buf, char *alphaOut, char maskSymbol) {
|
||||
|
||||
char *c;
|
||||
|
||||
if (! *alphaOut)
|
||||
return buf;
|
||||
|
||||
for (c = buf ; *c ; c++) {
|
||||
if (strchr(alphaOut, *c))
|
||||
*c = maskSymbol;
|
||||
}
|
||||
|
||||
return buf;
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* check alphabet */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
static int sCheckAlphabet(char *alpha) {
|
||||
|
||||
char *c;
|
||||
for (c = alpha ; *c ; c++) {
|
||||
if (! strchr(sDNA, *c)) /* invalid symbol */
|
||||
return 0;
|
||||
if (strchr(c+1, *c)) /* duplicate symbol */
|
||||
return 0;
|
||||
}
|
||||
|
||||
return strlen(alpha);
|
||||
}
|
||||
|
||||
/* ----------------------------------------------- */
|
||||
/* main */
|
||||
/* ----------------------------------------------- */
|
||||
|
||||
main(int argn, char *argv[])
|
||||
{
|
||||
int i, j, carg, errflag;
|
||||
int gflag, iflag, xflag, dflag, code;
|
||||
int selector, mixer, phase;
|
||||
int pos, len, step, window, nopen, nvalid, nbins, sign;
|
||||
int allLeft[3 * NB_NUC + 1][2], allRight[3 * NB_NUC + 1][2],
|
||||
countLeft[3 * NB_NUC + 1], countRight[3 * NB_NUC + 1],
|
||||
tmpLeft[2], tmpRight[2];
|
||||
float skew, sum;
|
||||
|
||||
Alphabet *alpha;
|
||||
Sequence *seq;
|
||||
SetOfIntervals *zones;
|
||||
char alphaOut[128];
|
||||
char inputfile[FILENAME_MAX], includefile[FILENAME_MAX];
|
||||
|
||||
|
||||
IndexFunction indexingFunction;
|
||||
CountFunction countingFunction;
|
||||
DistFunction distanceFunction;
|
||||
MixFunction mixingFunction;
|
||||
|
||||
|
||||
/* ---------------------------- */
|
||||
/* defaut options */
|
||||
|
||||
errflag = 0;
|
||||
selector = SELECTOR_COUNT; /* mono countings */
|
||||
mixer = MIXER_BASIC; /* basic mixer */
|
||||
dflag = DISTANCE_CHI; /* chi-square distance */
|
||||
iflag = 0; /* no inclusion */
|
||||
phase = 0x7; /* all phases */
|
||||
xflag = 0; /* no exclusion */
|
||||
code = 0; /* universal code */
|
||||
step = DFT_STEP;
|
||||
window = DFT_WINDOW;
|
||||
|
||||
alpha = NucleicAlphabet();
|
||||
|
||||
alphaOut[0] = '\000';
|
||||
|
||||
(void) strcpy(inputfile, "<stdin>");
|
||||
(void) strcpy(includefile, "<none>");
|
||||
|
||||
/* ---------------------------- */
|
||||
/* parse cmdline arguments */
|
||||
|
||||
while ((carg = getopt(argn, argv, "a:b:c:d:e:g:hi:m:p:s:w:W:x:")) != -1) {
|
||||
|
||||
switch(carg) {
|
||||
|
||||
case 'a' : /* [a]lphabet */
|
||||
(void) FreeAlphabet(alpha);
|
||||
alpha = NewAlphabet(sUpper(optarg));
|
||||
if (! sCheckAlphabet(alpha->symbol)) {
|
||||
Erreur("bad alphabet", -1);
|
||||
errflag++;
|
||||
}
|
||||
break;
|
||||
|
||||
case 'b' : /* excluded symbols */
|
||||
(void) strcpy(alphaOut, sUpper(optarg));
|
||||
break;
|
||||
|
||||
|
||||
case 'c' : /* [c]ount selector */
|
||||
selector = sSetSelector(optarg);
|
||||
if (selector == SELECTOR_NONE) {
|
||||
Erreur("bad count selector", -1);
|
||||
errflag++;
|
||||
}
|
||||
break;
|
||||
|
||||
case 'e': /* g[e]netic code */
|
||||
if ( (sscanf(optarg, "%d", &code) != 1)
|
||||
|| (code < 0) || (code > GEN_MAX_CODES)) {
|
||||
Erreur("bad code value: -e (0-8)", -1);
|
||||
errflag++;
|
||||
}
|
||||
else {
|
||||
InitCodonSkewCounter(code);
|
||||
}
|
||||
break;
|
||||
|
||||
case 'd' : /* [d]istance selector */
|
||||
dflag = sSetDistance(optarg);
|
||||
if (dflag == DISTANCE_NONE) {
|
||||
Erreur("bad distance selector", -1);
|
||||
errflag++;
|
||||
}
|
||||
break;
|
||||
|
||||
case 'h' : /* help */
|
||||
PrintHelp();
|
||||
exit(0);
|
||||
|
||||
case 'i' : /* [i]nclude file */
|
||||
if (xflag) {
|
||||
Erreur("-x and -i options are incompatibles", -1);
|
||||
errflag++;
|
||||
}
|
||||
iflag = 1;
|
||||
(void) strcpy(includefile, optarg);
|
||||
break;
|
||||
|
||||
case 'm' : /* [m]ixer selector */
|
||||
mixer = sSetMixer(optarg);
|
||||
if (mixer == MIXER_NONE) {
|
||||
Erreur("bad mixer selector", -1);
|
||||
errflag++;
|
||||
}
|
||||
break;
|
||||
|
||||
case 'p' : /* [p]hase mask */
|
||||
phase = sGetPhaseMask(optarg);
|
||||
if (phase == 0) {
|
||||
Erreur("bad phase value", -1);
|
||||
errflag++;
|
||||
}
|
||||
break;
|
||||
|
||||
case 's': /* [s]tep */
|
||||
if ( (sscanf(optarg, "%d", &step) != 1)
|
||||
|| (step <= 0) ) {
|
||||
Erreur("bad step value", 0);
|
||||
errflag++;
|
||||
}
|
||||
break;
|
||||
|
||||
case 'w': /* [w]indow */
|
||||
if ( (sscanf(optarg, "%d", &window) != 1)
|
||||
|| (window <= 0) ) {
|
||||
Erreur("bad window value", -1);
|
||||
errflag++;
|
||||
}
|
||||
break;
|
||||
|
||||
case 'W': /* [W]indow */
|
||||
if ( (sscanf(optarg, "%d", &window) != 1)
|
||||
|| (window <= 0)
|
||||
|| (window > 100)) {
|
||||
Erreur("bad bad window percent value", -1);
|
||||
errflag++;
|
||||
}
|
||||
window = -window;
|
||||
break;
|
||||
|
||||
case 'x' : /* e[X]lude file */
|
||||
if (iflag) {
|
||||
Erreur("-x and -i options are incompatibles", -1);
|
||||
errflag++;
|
||||
}
|
||||
xflag = 1;
|
||||
(void) strcpy(includefile, optarg);
|
||||
break;
|
||||
|
||||
case '?' : /* misusage */
|
||||
errflag++;
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
/* -------------------------------- */
|
||||
/* check some options compatibility */
|
||||
|
||||
if ((phase != 0x7) && (! iflag)) {
|
||||
Erreur("-p flag requires -i flag", -1);
|
||||
errflag++;
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_CUMUL) {
|
||||
if (alpha->length != 2) {
|
||||
Erreur("need a two-letters alphabet for -c cumul", -1);
|
||||
errflag++;
|
||||
}
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_GENE) {
|
||||
if (! iflag) {
|
||||
Erreur("-c gene requires -i flag", -1);
|
||||
errflag++;
|
||||
}
|
||||
if (phase != 0x7) {
|
||||
Erreur("-c gene needs -p 123", -1);
|
||||
errflag++;
|
||||
}
|
||||
if (strcmp(alpha->symbol, sDNA)) {
|
||||
Erreur("-a ignored for -c gene", 0);
|
||||
(void) FreeAlphabet(alpha);
|
||||
alpha = NucleicAlphabet();
|
||||
}
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_CODON) {
|
||||
if (! iflag) {
|
||||
Erreur("-c codon requires -i flag", -1);
|
||||
errflag++;
|
||||
}
|
||||
if (phase != 0x7) {
|
||||
Erreur("-c codon is incompatible with -p flag", -1);
|
||||
errflag++;
|
||||
}
|
||||
if (strcmp(alpha->symbol, sDNA)) {
|
||||
Erreur("-a ignored for -c codon", 0);
|
||||
(void) FreeAlphabet(alpha);
|
||||
alpha = NucleicAlphabet();
|
||||
}
|
||||
}
|
||||
|
||||
/* ---------------------------- */
|
||||
/* may remain 1 argument */
|
||||
|
||||
argn -= optind;
|
||||
|
||||
if (argn > 1)
|
||||
errflag++;
|
||||
|
||||
if (errflag)
|
||||
ExitUsage(1);
|
||||
|
||||
/* ---------------------------- */
|
||||
/* allocate sequences */
|
||||
|
||||
seq = NewSequence(alpha);
|
||||
|
||||
/* ---------------------------- */
|
||||
/* read genome */
|
||||
|
||||
if (argn == 1) {
|
||||
(void) strcpy(inputfile, argv[optind]);
|
||||
if (! AssignToStdin(inputfile))
|
||||
Erreur("cannot open sequence file", 3);
|
||||
}
|
||||
|
||||
if (! ReadSequence(stdin, seq))
|
||||
Erreur("cannot read sequence file", 4);
|
||||
|
||||
(void) sUpper(seq->fasta->seq); /* upper case sequence */
|
||||
|
||||
(void) sExcludeFromSeq(seq->fasta->seq, alphaOut, MASKED_SYMBOL);
|
||||
|
||||
/* ---------------------------- */
|
||||
/* read include file */
|
||||
|
||||
if (iflag || xflag) {
|
||||
if (! (AssignToStdin(includefile)))
|
||||
Erreur("cannot open include file", 4);
|
||||
if (! (zones = ReadZones(seq->fasta->length)))
|
||||
Erreur("cannot read include zones", 5);
|
||||
}
|
||||
else {
|
||||
zones = NULL;
|
||||
}
|
||||
|
||||
/* ---------------------------- */
|
||||
/* adjust parameters */
|
||||
|
||||
/* -------------------- */
|
||||
len = seq->fasta->length; /* sequence length */
|
||||
|
||||
/* -------------------- */
|
||||
if (window < 0) /* window */
|
||||
window = len * (-window) / 100;
|
||||
|
||||
window /= 2; /* actual wondow for each half */
|
||||
|
||||
/* -------------------- */
|
||||
if (selector == SELECTOR_GENE) { /* alphabet */
|
||||
(void) strcpy(alpha->symbol, "DR");
|
||||
alpha->length = 2;
|
||||
}
|
||||
/* -------------------- */
|
||||
nbins = alpha->length; /* # bins (for chi2) */
|
||||
/* -------------------- */
|
||||
if (xflag) { /* indexing function */
|
||||
indexingFunction = ExcludeIndexer;
|
||||
}
|
||||
else if (iflag) {
|
||||
indexingFunction = PhaseIndexer;
|
||||
}
|
||||
else {
|
||||
indexingFunction = NoZoneIndexer;
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_GENE) {
|
||||
indexingFunction = GeneIndexer;
|
||||
}
|
||||
if (selector == SELECTOR_CODON) {
|
||||
indexingFunction = CodonIndexer;
|
||||
}
|
||||
|
||||
/* -------------------- */
|
||||
if (selector == SELECTOR_CODON) { /* counting function */
|
||||
|
||||
/* precompute score for each possible codon */
|
||||
/* to speedup computation */
|
||||
|
||||
CodonSkew(code, sCodonScore);
|
||||
|
||||
countingFunction = CodonSkewCounter;
|
||||
|
||||
nbins = 3 * NB_NUC;
|
||||
}
|
||||
else {
|
||||
countingFunction = BasicCounter;
|
||||
}
|
||||
|
||||
/* -------------------- */
|
||||
if (dflag == DISTANCE_EUCLID) { /* distance function */
|
||||
distanceFunction = Euclid;
|
||||
}
|
||||
else if (dflag == DISTANCE_HELL) {
|
||||
distanceFunction = HellTwo;
|
||||
}
|
||||
else {
|
||||
distanceFunction = ChisTwo;
|
||||
}
|
||||
|
||||
|
||||
/* -------------------- */
|
||||
if (mixer == MIXER_CROSS) { /* mixing function */
|
||||
mixingFunction = CrossMixer;
|
||||
}
|
||||
else {
|
||||
mixingFunction = BasicMixer;
|
||||
}
|
||||
|
||||
/* ---------------------------- */
|
||||
/* index sequence */
|
||||
|
||||
indexingFunction(seq, zones, phase);
|
||||
|
||||
/* ---------------------------- */
|
||||
/* # included positions */
|
||||
|
||||
for (i = nopen = nvalid = 0 ; i < len ; i++) {
|
||||
if ((seq->cell[i].mask & EXCLUDE_MASK) == 0) {
|
||||
nopen++;
|
||||
if (seq->cell[i].index >= 0)
|
||||
nvalid++;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/* ---------------------------- */
|
||||
/* printout header */
|
||||
|
||||
printf("# input : %s\n", inputfile);
|
||||
printf("# %s : %s\n", (xflag ? "exclude" : "include"), includefile);
|
||||
printf("# selector : %s\n", sGetSelector(selector));
|
||||
printf("# mixer : %s\n", sGetMixer(mixer));
|
||||
printf("# distance : %s\n", sGetDistance(dflag));
|
||||
printf("# phase : %d\n", phase);
|
||||
printf("# alphabet : %s\n", alpha->symbol);
|
||||
printf("# excluded : X%s\n", alphaOut);
|
||||
printf("# seqname : %s\n", seq->fasta->name);
|
||||
printf("# seqlength : %d\n", len);
|
||||
printf("# unmasked : %d\n", nopen);
|
||||
printf("# valid : %d\n", nvalid);
|
||||
printf("# window : %d\n", 2 * window);
|
||||
printf("# step : %d\n", step);
|
||||
printf("#\n");
|
||||
|
||||
printf("# pos");
|
||||
|
||||
if (selector == SELECTOR_COUNT) {
|
||||
for (i = 0 ; i < alpha->length ; i++) {
|
||||
printf(" Left%c Right%c", alpha->symbol[i], alpha->symbol[i]);
|
||||
}
|
||||
printf(" LeftOther RightOther");
|
||||
printf(" %s%s", sGetDistance(dflag), alpha->symbol);
|
||||
printf(" %s[%s]Other", sGetDistance(dflag), alpha->symbol);
|
||||
for (i = 0 ; i < alpha->length ; i++) {
|
||||
printf(" %s%c", sGetDistance(dflag), alpha->symbol[i]);
|
||||
}
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_CUMUL) {
|
||||
printf(" %c-%c/%c+%c", alpha->symbol[0], alpha->symbol[1], alpha->symbol[0], alpha->symbol[1]);
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_GENE) {
|
||||
printf(" LeftDirect RightDirect LeftReverse RightReverse");
|
||||
printf(" %s_Direct", sGetDistance(dflag));
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_CODON) {
|
||||
printf(" LeftTotalCodon RightTotalCodon");
|
||||
for (i = 0 ; i < alpha->length ; i++) {
|
||||
printf(" Left%c0 Left%cP Left%cM", alpha->symbol[i], alpha->symbol[i], alpha->symbol[i]);
|
||||
printf(" Right%c0 Right%cP Right%cM", alpha->symbol[i], alpha->symbol[i], alpha->symbol[i]);
|
||||
}
|
||||
for (i = 0 ; i < alpha->length ; i++) {
|
||||
printf(" Total%s%c", sGetDistance(dflag), alpha->symbol[i]);
|
||||
}
|
||||
}
|
||||
|
||||
printf("\n");
|
||||
|
||||
/* ---------------------------- */
|
||||
/* now go ahead ! */
|
||||
|
||||
skew = 0.; /* just for SELECTOR_CUMUL */
|
||||
|
||||
for (pos = 0 ; pos < len ; pos += step) {
|
||||
|
||||
/* compute skew */
|
||||
|
||||
if ((pos == 0) || (window < step)) {
|
||||
countingFunction(seq, pos, pos + window, allRight, nbins, 0);
|
||||
countingFunction(seq, pos + len - window, pos + len, allLeft, nbins, 0);
|
||||
}
|
||||
else {
|
||||
countingFunction(seq, pos - step, pos, allRight, nbins, -1);
|
||||
countingFunction(seq, pos - step + window, pos + window, allRight, nbins, 1);
|
||||
countingFunction(seq, pos - step + len - window, pos + len - window, allLeft, nbins, -1);
|
||||
countingFunction(seq, pos - step, pos, allLeft, nbins, 1);
|
||||
}
|
||||
|
||||
mixingFunction(allLeft, allRight, countLeft, countRight, nbins);
|
||||
|
||||
|
||||
/* printout result */
|
||||
|
||||
printf("%d", pos+1);
|
||||
|
||||
/* printout skew */
|
||||
|
||||
if (selector == SELECTOR_COUNT) {
|
||||
|
||||
/* -- printout counts -- */
|
||||
|
||||
for (i = 0 ; i <= alpha->length ; i++) {
|
||||
printf(" %d %d", countLeft[i], countRight[i]);
|
||||
}
|
||||
|
||||
/* -- printout total alphabet chisquare -- */
|
||||
|
||||
skew = distanceFunction(countLeft, countRight, nbins, -1);
|
||||
sign = ((nbins == 2) ? SignTwoBins(countRight, countLeft) : 1);
|
||||
printf(" %g", skew * sign);
|
||||
|
||||
/* -- printout anti alphabet chisquare -- */
|
||||
|
||||
tmpLeft[1] = countLeft[alpha->length];
|
||||
tmpRight[1] = countRight[alpha->length];
|
||||
tmpLeft[0] = tmpRight[0] = 0;
|
||||
for (i = 0 ; i < alpha->length ; i++) {
|
||||
tmpLeft[0] += countLeft[i];
|
||||
tmpRight[0] += countRight[i];
|
||||
}
|
||||
skew = distanceFunction(tmpLeft, tmpRight, 2, -1);
|
||||
sign = SignTwoBins(tmpRight, tmpLeft);
|
||||
printf(" %g", skew * sign);
|
||||
|
||||
/* -- printout partial chisquares -- */
|
||||
|
||||
tmpLeft[0] = tmpRight[0] = 0;
|
||||
tmpLeft[1] = tmpRight[1] = 0;
|
||||
for (j = 0 ; j < alpha->length ; j++) {
|
||||
tmpLeft[1] += countLeft[j];
|
||||
tmpRight[1] += countRight[j];
|
||||
}
|
||||
|
||||
for (i = 0 ; i < alpha->length ; i++) {
|
||||
skew = distanceFunction(countLeft, countRight, nbins, i);
|
||||
tmpLeft[0] = countLeft[i];
|
||||
tmpRight[0] = countRight[i];
|
||||
tmpLeft[1] -= countLeft[i];
|
||||
tmpRight[1] -= countRight[i];
|
||||
sign = SignTwoBins(tmpRight, tmpLeft);
|
||||
tmpLeft[1] += countLeft[i];
|
||||
tmpRight[1] += countRight[i];
|
||||
printf(" %g", skew * sign);
|
||||
}
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_CUMUL) {
|
||||
|
||||
/* -- printout XY cumulatives -- */
|
||||
|
||||
sum = (float) ((countRight[0] + countLeft[0]) + (countRight[1] + countLeft[1]));
|
||||
if (sum != 0.) {
|
||||
skew += (float) ((countRight[0] + countLeft[0]) - (countRight[1] + countLeft[1]))
|
||||
/ (sum * (float) len) * CUMUL_NORM;
|
||||
}
|
||||
printf(" %g", skew);
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_GENE) {
|
||||
|
||||
/* -- printout direct -- */
|
||||
|
||||
printf(" %d %d", countLeft[0], countRight[0]);
|
||||
|
||||
/* -- printout reverse -- */
|
||||
|
||||
printf(" %d %d", countLeft[1], countRight[1]);
|
||||
|
||||
/* -- printout chi direct -- */
|
||||
|
||||
skew = distanceFunction(countLeft, countRight, nbins, -1);
|
||||
sign = SignTwoBins(countRight, countLeft);
|
||||
printf(" %g", skew * sign);
|
||||
}
|
||||
|
||||
if (selector == SELECTOR_CODON) {
|
||||
|
||||
/* -- printout total codons -- */
|
||||
|
||||
printf(" %d %d", countLeft[3* NB_NUC], countRight[3 * NB_NUC]);
|
||||
|
||||
/* -- printout nuc-enrichment -- */
|
||||
|
||||
for (i = 0 ; i < NB_NUC ; i++) {
|
||||
for (j = 0 ; j < 3 ; j++) {
|
||||
printf(" %d", countLeft[3*i + j]);
|
||||
}
|
||||
for (j = 0 ; j < 3 ; j++) {
|
||||
printf(" %d", countRight[3*i + j]);
|
||||
}
|
||||
}
|
||||
|
||||
/* -- printout total chi nuc-enrichment -- */
|
||||
|
||||
for (i = 0 ; i < NB_NUC ; i++) {
|
||||
skew = distanceFunction(countLeft + 3*i, countRight + 3*i, 3, -1);
|
||||
printf(" %g", skew);
|
||||
}
|
||||
}
|
||||
|
||||
printf("\n");
|
||||
}
|
||||
|
||||
FreeAlphabet(alpha);
|
||||
FreeSequence(seq);
|
||||
FreeZones(zones);
|
||||
|
||||
exit(0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
Executable
+25
@@ -0,0 +1,25 @@
|
||||
# ---------------------------------------------------------------
|
||||
# $Id: $
|
||||
# ---------------------------------------------------------------
|
||||
# @file: Makefile
|
||||
# @desc: makefile for kimono/test
|
||||
#
|
||||
# @history:
|
||||
# @history:
|
||||
# @+ <Gloup> : Apr 97 : Created
|
||||
# @+ <Gloup> : Mar 02 : Updated for LXxware
|
||||
#
|
||||
# @note: should be processed with gnu compatible make
|
||||
# @note: helixware_compatible
|
||||
#
|
||||
# @end:
|
||||
# ---------------------------------------------------------------
|
||||
#
|
||||
|
||||
include ../config/targets/empty.targ
|
||||
|
||||
clean::
|
||||
-\rm -f *.tst
|
||||
|
||||
test::
|
||||
./test.csh
|
||||
File diff suppressed because it is too large.
Load diff
@@ -0,0 +1,850 @@
|
||||
105 677 D
|
||||
768 1796 C
|
||||
1784 3148 C
|
||||
3395 5188 D
|
||||
5251 6312 C
|
||||
6309 7433 C
|
||||
7458 8315 C
|
||||
8412 9197 D
|
||||
9202 10206 D
|
||||
10203 10577 D
|
||||
10581 11420 D
|
||||
11421 12161 D
|
||||
12154 12753 D
|
||||
12746 14728 D
|
||||
14725 15348 C
|
||||
15345 15722 C
|
||||
15845 16804 D
|
||||
16807 17817 C
|
||||
17792 18304 C
|
||||
18312 19979 C
|
||||
20445 21092 C
|
||||
21058 22101 C
|
||||
22146 22739 C
|
||||
22819 23958 D
|
||||
23965 24696 C
|
||||
24697 25623 C
|
||||
25753 26391 D
|
||||
26399 27448 D
|
||||
27434 27865 C
|
||||
27855 28490 C
|
||||
28492 29472 C
|
||||
29543 31015 D
|
||||
31027 31479 D
|
||||
31550 32089 C
|
||||
32157 34037 C
|
||||
34037 35836 C
|
||||
35857 36609 C
|
||||
36606 38123 C
|
||||
38136 39638 C
|
||||
39826 40677 D
|
||||
40677 40769 D
|
||||
40761 41432 C
|
||||
41443 42483 C
|
||||
42480 42881 C
|
||||
42907 45366 C
|
||||
45446 45991 D
|
||||
46011 46394 C
|
||||
46601 46771 C
|
||||
46921 47040 C
|
||||
47167 47841 D
|
||||
47905 48606 D
|
||||
48603 49259 C
|
||||
49341 50012 D
|
||||
50112 50489 C
|
||||
50490 51251 C
|
||||
51253 52434 C
|
||||
52454 53461 C
|
||||
53534 55504 C
|
||||
55501 56280 C
|
||||
56281 56748 C
|
||||
56832 57185 C
|
||||
57259 57975 D
|
||||
58029 59036 C
|
||||
59101 60039 C
|
||||
60036 60554 C
|
||||
60568 61257 C
|
||||
61254 63032 C
|
||||
63147 64028 D
|
||||
64038 65276 D
|
||||
65291 65752 D
|
||||
65768 67240 D
|
||||
67248 69569 D
|
||||
69566 70126 D
|
||||
70173 71219 D
|
||||
71201 72610 D
|
||||
72647 73492 D
|
||||
73489 74517 D
|
||||
74518 75039 D
|
||||
75110 75772 D
|
||||
75732 76454 D
|
||||
76451 77701 D
|
||||
77711 79009 C
|
||||
79002 79376 C
|
||||
79505 80773 D
|
||||
80983 81408 D
|
||||
81405 82940 D
|
||||
82970 83920 C
|
||||
84041 85720 C
|
||||
85880 86854 C
|
||||
86926 87360 C
|
||||
87377 89203 C
|
||||
89200 89814 C
|
||||
89811 91115 C
|
||||
91137 92792 C
|
||||
92878 93423 C
|
||||
93433 94035 C
|
||||
94219 94605 C
|
||||
94611 96953 C
|
||||
96943 97866 C
|
||||
97863 98648 C
|
||||
98805 100205 D
|
||||
100228 100749 D
|
||||
100746 101339 C
|
||||
101525 102976 C
|
||||
103016 103771 C
|
||||
103764 105473 C
|
||||
105418 105855 C
|
||||
105884 106894 C
|
||||
106974 108170 C
|
||||
108307 109671 D
|
||||
109675 111042 C
|
||||
111046 111567 C
|
||||
111585 111875 C
|
||||
111889 112338 C
|
||||
112350 112769 C
|
||||
112909 114633 C
|
||||
114807 115508 D
|
||||
115505 116818 C
|
||||
117678 118370 C
|
||||
118375 118929 C
|
||||
118964 119803 C
|
||||
119807 120589 C
|
||||
120804 121082 C
|
||||
121101 121823 C
|
||||
121880 122491 C
|
||||
122491 124152 C
|
||||
124149 124814 C
|
||||
124798 125547 C
|
||||
125534 126301 C
|
||||
126316 127413 C
|
||||
127427 130132 C
|
||||
130170 131114 C
|
||||
131277 132425 D
|
||||
132472 133845 C
|
||||
133975 135864 D
|
||||
135874 137766 C
|
||||
137880 138089 C
|
||||
138434 138823 C
|
||||
138850 141960 C
|
||||
141979 142935 C
|
||||
142944 144266 C
|
||||
144307 144597 D
|
||||
144586 145458 C
|
||||
145471 146370 C
|
||||
146377 147495 C
|
||||
147649 148659 C
|
||||
148710 148805 D
|
||||
148786 150783 C
|
||||
150805 150897 C
|
||||
150974 152179 D
|
||||
152206 153012 D
|
||||
153075 153719 C
|
||||
153701 156400 C
|
||||
156462 157598 D
|
||||
157627 158061 D
|
||||
158058 158474 D
|
||||
158628 159344 D
|
||||
159368 160042 D
|
||||
160090 161208 D
|
||||
161200 162864 C
|
||||
162878 163045 D
|
||||
163072 164820 C
|
||||
164901 165914 C
|
||||
165915 167759 C
|
||||
167879 169399 C
|
||||
169539 170708 D
|
||||
170720 171097 C
|
||||
171212 171484 D
|
||||
171532 173580 C
|
||||
173529 174116 C
|
||||
174098 175138 C
|
||||
175081 176106 C
|
||||
176069 176974 C
|
||||
176978 177853 C
|
||||
177868 178881 C
|
||||
178917 179543 C
|
||||
179540 181423 C
|
||||
181408 182802 C
|
||||
182886 183380 D
|
||||
183392 185275 D
|
||||
185278 186552 D
|
||||
186554 186946 D
|
||||
186949 187194 D
|
||||
187178 187831 C
|
||||
187824 188237 C
|
||||
188234 188494 C
|
||||
188708 189055 C
|
||||
189076 189276 C
|
||||
189299 189859 C
|
||||
189949 190044 D
|
||||
190064 190717 D
|
||||
190719 191459 D
|
||||
191518 192327 C
|
||||
192324 193463 C
|
||||
193800 194873 D
|
||||
194876 195736 D
|
||||
195693 197696 D
|
||||
197686 199950 D
|
||||
199965 201035 C
|
||||
201052 202578 C
|
||||
202850 204088 D
|
||||
204137 205072 D
|
||||
205073 206044 D
|
||||
206529 208106 D
|
||||
208084 208653 C
|
||||
208706 209542 D
|
||||
209529 211274 D
|
||||
211301 212068 D
|
||||
212061 215420 D
|
||||
215427 217259 D
|
||||
217278 218312 D
|
||||
218425 219078 C
|
||||
219056 219634 C
|
||||
219797 220639 D
|
||||
220729 221637 D
|
||||
222192 223178 D
|
||||
223179 223961 D
|
||||
223964 224785 C
|
||||
224826 226610 C
|
||||
226610 227836 C
|
||||
227814 228521 C
|
||||
228542 228895 C
|
||||
228864 229148 C
|
||||
229217 230224 D
|
||||
230214 231491 C
|
||||
231621 232322 D
|
||||
232338 235253 D
|
||||
235289 235534 C
|
||||
235595 237142 C
|
||||
237222 237629 C
|
||||
237630 237956 C
|
||||
237969 238292 C
|
||||
238301 239128 C
|
||||
239144 240250 C
|
||||
240283 242289 C
|
||||
242438 244003 D
|
||||
243943 244731 C
|
||||
244777 245394 C
|
||||
245790 246554 D
|
||||
246597 248102 D
|
||||
248156 248434 D
|
||||
248506 250089 D
|
||||
250176 250670 C
|
||||
250657 251211 C
|
||||
251212 252237 C
|
||||
252434 253039 D
|
||||
253159 254931 D
|
||||
254945 255649 D
|
||||
255646 256260 D
|
||||
256463 258985 D
|
||||
259000 261303 D
|
||||
261292 263712 C
|
||||
263988 266114 D
|
||||
266095 267051 D
|
||||
267066 267275 D
|
||||
267313 269676 C
|
||||
269673 270473 C
|
||||
270488 272701 C
|
||||
272634 273647 C
|
||||
273854 275236 D
|
||||
275243 276496 C
|
||||
276558 277064 D
|
||||
277090 278565 C
|
||||
278537 279058 C
|
||||
279078 279386 C
|
||||
279407 281311 C
|
||||
281314 281793 C
|
||||
281800 282687 C
|
||||
282699 283865 C
|
||||
283869 285962 C
|
||||
285971 287089 C
|
||||
287089 287898 C
|
||||
287910 288173 C
|
||||
288182 288946 C
|
||||
288957 289583 C
|
||||
289576 289917 C
|
||||
289963 291021 C
|
||||
291059 291595 C
|
||||
291644 292426 C
|
||||
292426 293208 C
|
||||
293205 293429 C
|
||||
293452 294780 C
|
||||
294785 295228 C
|
||||
295242 296426 C
|
||||
296428 297051 C
|
||||
297038 297469 C
|
||||
297466 298776 C
|
||||
298795 299715 C
|
||||
299730 300764 C
|
||||
300780 302489 C
|
||||
302504 302839 C
|
||||
302851 303309 C
|
||||
303333 303740 C
|
||||
303774 305141 C
|
||||
305113 305661 C
|
||||
305671 306618 C
|
||||
306625 307317 C
|
||||
307318 308532 C
|
||||
308539 309780 C
|
||||
309780 310523 C
|
||||
310559 311653 C
|
||||
311660 312715 C
|
||||
312729 314123 C
|
||||
314146 314427 C
|
||||
314424 315314 C
|
||||
315307 316143 C
|
||||
316140 317216 C
|
||||
317247 318026 C
|
||||
318119 318256 C
|
||||
318277 319158 C
|
||||
319106 319636 C
|
||||
319680 320258 C
|
||||
320309 321352 D
|
||||
321352 322038 D
|
||||
322040 322846 C
|
||||
322847 323779 C
|
||||
323776 325236 C
|
||||
325236 326288 C
|
||||
326325 326432 C
|
||||
326469 326666 C
|
||||
326699 327757 C
|
||||
328032 329165 D
|
||||
329262 329621 D
|
||||
329643 330752 C
|
||||
330803 333598 C
|
||||
333619 334515 C
|
||||
334919 336508 D
|
||||
336629 338215 D
|
||||
338358 339983 D
|
||||
340062 340217 C
|
||||
340341 341261 D
|
||||
341274 342323 D
|
||||
342335 343207 D
|
||||
343208 344179 D
|
||||
344192 344947 C
|
||||
345063 346364 D
|
||||
346431 346841 C
|
||||
346861 347301 C
|
||||
347351 348160 C
|
||||
348153 349610 C
|
||||
349600 351090 C
|
||||
351056 351331 C
|
||||
351341 353440 C
|
||||
353440 354636 C
|
||||
354648 355298 C
|
||||
355482 356909 D
|
||||
357007 358440 D
|
||||
358458 359198 D
|
||||
359217 359495 C
|
||||
359513 361081 C
|
||||
361188 362321 D
|
||||
362318 364117 C
|
||||
364130 365170 C
|
||||
365115 365603 C
|
||||
365643 366137 C
|
||||
366144 366236 C
|
||||
366229 366960 C
|
||||
366964 368391 C
|
||||
368456 368881 D
|
||||
368885 370027 D
|
||||
370027 371013 D
|
||||
371034 373046 D
|
||||
373140 373520 D
|
||||
373567 374151 C
|
||||
374277 375653 D
|
||||
375661 375939 D
|
||||
375961 377052 C
|
||||
377039 379330 C
|
||||
379341 380558 C
|
||||
380555 381892 C
|
||||
381910 383382 C
|
||||
383395 384162 C
|
||||
384287 385426 D
|
||||
385449 386162 D
|
||||
386159 387337 D
|
||||
387286 387807 D
|
||||
387818 388480 C
|
||||
388507 388956 C
|
||||
388977 390341 C
|
||||
390392 391819 C
|
||||
391932 392957 C
|
||||
393044 394063 C
|
||||
394105 395166 C
|
||||
395481 396563 C
|
||||
396604 397077 C
|
||||
397102 397476 C
|
||||
397544 401677 C
|
||||
401693 405160 C
|
||||
405243 405617 C
|
||||
405688 406194 C
|
||||
406181 406861 C
|
||||
406861 407292 C
|
||||
407344 407898 C
|
||||
407922 408092 C
|
||||
408201 408380 C
|
||||
408554 409402 C
|
||||
409416 410447 C
|
||||
410787 411446 D
|
||||
411456 413006 C
|
||||
413113 414315 D
|
||||
414327 415793 C
|
||||
415846 416523 C
|
||||
416689 417105 D
|
||||
417102 417713 D
|
||||
417724 418335 D
|
||||
418388 419506 C
|
||||
419503 421380 C
|
||||
421554 422183 D
|
||||
422180 422299 D
|
||||
422471 423058 D
|
||||
423055 423834 D
|
||||
423822 424445 C
|
||||
424694 425551 D
|
||||
425584 426711 D
|
||||
426736 427950 D
|
||||
427987 428622 D
|
||||
428646 429674 D
|
||||
429693 430616 C
|
||||
430619 435103 C
|
||||
441713 442552 C
|
||||
442688 443248 C
|
||||
443763 444053 C
|
||||
444150 444299 D
|
||||
446113 446205 C
|
||||
446327 446890 C
|
||||
446969 447760 C
|
||||
447855 448172 D
|
||||
448202 448591 C
|
||||
448705 449310 D
|
||||
449419 450171 D
|
||||
450174 450887 D
|
||||
450972 451070 C
|
||||
451139 451921 C
|
||||
452040 454472 C
|
||||
454484 456403 C
|
||||
456576 458036 D
|
||||
458277 459434 D
|
||||
459525 459824 D
|
||||
459916 460071 D
|
||||
460052 460411 D
|
||||
460398 462032 D
|
||||
462045 462773 D
|
||||
462819 463886 D
|
||||
464053 465132 D
|
||||
465518 467038 C
|
||||
467282 469387 C
|
||||
469390 469665 C
|
||||
469678 469971 C
|
||||
469961 471220 C
|
||||
471223 471756 C
|
||||
471771 472475 C
|
||||
472566 473408 D
|
||||
473405 474556 C
|
||||
474613 475602 D
|
||||
475606 476211 D
|
||||
476263 478074 C
|
||||
478139 479716 D
|
||||
479709 481019 D
|
||||
481344 482057 C
|
||||
482600 484282 D
|
||||
484254 484586 D
|
||||
484757 485266 D
|
||||
485550 486077 D
|
||||
486074 486769 D
|
||||
486705 487538 D
|
||||
487535 488224 D
|
||||
488226 488972 D
|
||||
488983 489495 D
|
||||
489492 489719 D
|
||||
489733 490554 D
|
||||
490599 491927 D
|
||||
492588 493952 D
|
||||
493991 494092 D
|
||||
494150 494542 C
|
||||
495012 496217 D
|
||||
496268 496579 D
|
||||
496615 497235 D
|
||||
497245 497874 D
|
||||
497880 498191 D
|
||||
498213 499046 D
|
||||
499056 499334 D
|
||||
499341 499703 D
|
||||
499707 500588 D
|
||||
500593 501009 D
|
||||
501012 501212 D
|
||||
501215 501469 D
|
||||
501491 501865 D
|
||||
501880 502185 D
|
||||
502191 502739 D
|
||||
502717 502941 D
|
||||
502951 503349 D
|
||||
503366 503908 D
|
||||
503926 504285 D
|
||||
504298 504795 D
|
||||
504799 505104 D
|
||||
505104 505541 D
|
||||
505554 506858 D
|
||||
506865 506984 D
|
||||
507002 507379 D
|
||||
507394 507798 D
|
||||
507811 508848 D
|
||||
508870 509241 D
|
||||
509314 510846 D
|
||||
510836 511624 D
|
||||
511605 512396 D
|
||||
512393 513148 C
|
||||
513226 514527 D
|
||||
514524 515783 D
|
||||
515780 515998 D
|
||||
516090 516473 D
|
||||
516493 522993 D
|
||||
522990 524576 D
|
||||
524554 526254 D
|
||||
526325 527305 D
|
||||
527361 528047 C
|
||||
528104 529198 C
|
||||
529198 531105 C
|
||||
531129 531692 C
|
||||
531851 531967 C
|
||||
532069 532521 D
|
||||
532938 533606 D
|
||||
533980 534072 D
|
||||
534301 535155 D
|
||||
535178 535600 C
|
||||
535704 537527 D
|
||||
537520 538308 D
|
||||
538328 539275 C
|
||||
539256 539372 D
|
||||
539367 540020 C
|
||||
540159 540773 C
|
||||
541182 542069 C
|
||||
542263 543024 D
|
||||
543049 543816 D
|
||||
543832 544605 D
|
||||
544586 547387 D
|
||||
547846 548490 C
|
||||
548487 548885 C
|
||||
548920 549618 C
|
||||
549642 551723 C
|
||||
552007 552225 D
|
||||
552440 553018 D
|
||||
553133 553789 D
|
||||
553992 555212 D
|
||||
555216 556580 D
|
||||
556563 557423 C
|
||||
557407 558024 C
|
||||
558006 560732 C
|
||||
560729 561127 C
|
||||
561117 561554 C
|
||||
561563 561964 C
|
||||
562185 564167 D
|
||||
564188 565681 C
|
||||
565943 567823 D
|
||||
567810 568277 D
|
||||
568270 569139 D
|
||||
569278 569538 D
|
||||
569559 571280 D
|
||||
571283 571852 D
|
||||
571890 573842 C
|
||||
573853 575247 D
|
||||
575274 575816 C
|
||||
575981 576526 C
|
||||
576582 577187 C
|
||||
577395 577937 D
|
||||
577950 578261 D
|
||||
578277 580421 D
|
||||
580486 581643 D
|
||||
581645 583417 D
|
||||
583458 583832 D
|
||||
584191 584880 C
|
||||
585080 586156 D
|
||||
586212 587024 D
|
||||
587031 587882 D
|
||||
588066 589667 D
|
||||
589684 590232 C
|
||||
590348 590935 D
|
||||
591188 592357 D
|
||||
592446 595931 D
|
||||
595943 596521 D
|
||||
596531 598591 D
|
||||
598588 599376 C
|
||||
599495 600844 D
|
||||
600998 602344 D
|
||||
602374 603729 D
|
||||
603726 604769 C
|
||||
604779 606983 C
|
||||
607138 607935 D
|
||||
608020 609078 D
|
||||
609061 609906 C
|
||||
609943 611193 C
|
||||
611309 612022 D
|
||||
612048 613985 D
|
||||
614014 615789 C
|
||||
615764 616390 C
|
||||
616412 618559 C
|
||||
618828 621035 D
|
||||
621045 621953 C
|
||||
622005 623447 D
|
||||
623451 625007 D
|
||||
625007 626260 D
|
||||
626286 627038 D
|
||||
627092 628948 C
|
||||
629196 630698 C
|
||||
630769 631986 D
|
||||
631991 632482 D
|
||||
632485 634464 D
|
||||
634581 636011 D
|
||||
636024 636134 C
|
||||
636593 637957 D
|
||||
637963 638556 D
|
||||
638580 639872 D
|
||||
639808 642249 D
|
||||
642289 642441 D
|
||||
642500 643129 C
|
||||
643295 644650 C
|
||||
644772 645140 D
|
||||
645137 645601 C
|
||||
645689 646681 D
|
||||
646659 648326 C
|
||||
648553 649107 D
|
||||
649170 650411 C
|
||||
650413 653790 C
|
||||
653887 654849 D
|
||||
654809 656902 D
|
||||
656998 657543 C
|
||||
657546 658817 C
|
||||
658898 659623 D
|
||||
659644 661524 C
|
||||
661606 662529 D
|
||||
662603 662917 C
|
||||
663179 665011 C
|
||||
665008 668517 C
|
||||
668848 671763 C
|
||||
671767 673212 C
|
||||
673342 674778 D
|
||||
675029 676378 D
|
||||
676472 677860 D
|
||||
677892 678938 C
|
||||
678959 679750 C
|
||||
679754 680563 C
|
||||
680563 681606 C
|
||||
681685 682524 C
|
||||
682679 683377 D
|
||||
683423 684967 D
|
||||
684997 685980 C
|
||||
685977 686507 C
|
||||
686607 688295 C
|
||||
688490 690127 D
|
||||
690151 690489 D
|
||||
690482 690799 D
|
||||
690885 692645 D
|
||||
692629 693528 D
|
||||
693554 694696 D
|
||||
694693 695523 C
|
||||
695631 696764 D
|
||||
696751 697437 C
|
||||
697571 698332 D
|
||||
698400 699965 C
|
||||
700052 700924 C
|
||||
701014 701385 D
|
||||
701395 701805 D
|
||||
701825 702274 D
|
||||
702283 702966 C
|
||||
703009 703968 D
|
||||
703931 704959 D
|
||||
704949 705500 D
|
||||
705571 706605 D
|
||||
706673 709267 D
|
||||
709274 710674 D
|
||||
710686 711171 D
|
||||
711211 711651 D
|
||||
711692 712207 C
|
||||
712204 713250 C
|
||||
713244 714107 C
|
||||
714104 714766 C
|
||||
715009 716619 D
|
||||
716620 717771 D
|
||||
717734 718669 D
|
||||
718827 721088 D
|
||||
721110 723020 D
|
||||
723063 724130 C
|
||||
724224 725447 D
|
||||
725413 726495 D
|
||||
726458 727753 D
|
||||
727737 728675 D
|
||||
728666 729619 D
|
||||
729613 730506 D
|
||||
730632 731099 C
|
||||
731151 731720 D
|
||||
731794 733803 D
|
||||
733809 733922 D
|
||||
734081 735289 D
|
||||
735343 736686 D
|
||||
736699 736959 D
|
||||
736960 737208 D
|
||||
737212 737712 D
|
||||
737709 738428 D
|
||||
738406 738771 D
|
||||
738851 738964 D
|
||||
739144 739683 D
|
||||
739685 740176 D
|
||||
740240 740422 D
|
||||
740446 740688 D
|
||||
740685 741425 D
|
||||
741396 742628 C
|
||||
742690 744516 D
|
||||
744522 744845 D
|
||||
745302 746333 D
|
||||
746339 747910 D
|
||||
747925 748119 D
|
||||
748123 750018 D
|
||||
750028 750789 D
|
||||
751191 752159 D
|
||||
752134 753219 D
|
||||
753223 754068 D
|
||||
754068 754550 D
|
||||
754550 756349 D
|
||||
756291 757670 D
|
||||
757836 759581 D
|
||||
759586 760215 D
|
||||
760202 761647 D
|
||||
761621 762154 C
|
||||
762242 763573 D
|
||||
763570 764361 D
|
||||
764371 765342 D
|
||||
765370 766716 D
|
||||
766733 768067 C
|
||||
768079 769470 C
|
||||
769547 771145 C
|
||||
771162 771563 C
|
||||
771570 774368 C
|
||||
774632 775462 D
|
||||
775666 776679 C
|
||||
776746 777573 D
|
||||
777625 777768 D
|
||||
777747 778754 D
|
||||
778758 781385 D
|
||||
781486 782073 C
|
||||
782152 782829 C
|
||||
782976 783257 C
|
||||
783324 785021 D
|
||||
785057 786754 D
|
||||
786860 788962 D
|
||||
789270 789938 D
|
||||
789947 790807 C
|
||||
790807 791787 C
|
||||
791794 792252 C
|
||||
792333 793625 D
|
||||
793693 793836 D
|
||||
793842 794915 C
|
||||
794875 796383 C
|
||||
796388 797122 C
|
||||
797119 798048 C
|
||||
798057 799016 C
|
||||
799208 800275 C
|
||||
800452 801072 D
|
||||
800996 801778 D
|
||||
801941 802798 C
|
||||
802838 803212 C
|
||||
803278 804165 D
|
||||
804240 804353 C
|
||||
804417 805778 C
|
||||
805775 806923 C
|
||||
806920 807966 C
|
||||
807976 808464 C
|
||||
808461 809552 C
|
||||
809701 810495 C
|
||||
810470 811510 C
|
||||
811507 812388 C
|
||||
812439 813239 C
|
||||
813690 814697 C
|
||||
814868 815302 C
|
||||
815502 816299 C
|
||||
816312 817214 C
|
||||
817393 817956 D
|
||||
818018 818548 D
|
||||
818605 818916 D
|
||||
818922 819242 D
|
||||
819242 819487 D
|
||||
819542 820528 D
|
||||
820568 821188 D
|
||||
821185 822369 D
|
||||
822335 822694 D
|
||||
822810 823103 D
|
||||
823167 823811 D
|
||||
823816 824382 D
|
||||
824382 825704 D
|
||||
825701 827620 D
|
||||
827625 829112 D
|
||||
829218 830321 D
|
||||
830318 830941 C
|
||||
830955 831728 C
|
||||
831646 836043 D
|
||||
836061 838526 D
|
||||
838523 839080 D
|
||||
839244 841832 D
|
||||
841834 842451 D
|
||||
842501 842989 D
|
||||
843003 844451 D
|
||||
844454 847102 D
|
||||
847105 847488 D
|
||||
847491 848339 D
|
||||
848538 848804 D
|
||||
848819 850987 D
|
||||
850994 852514 D
|
||||
852489 853778 D
|
||||
853775 854842 D
|
||||
854869 855996 D
|
||||
855971 857509 D
|
||||
857506 858915 D
|
||||
858939 860111 C
|
||||
860186 860362 D
|
||||
860440 861774 D
|
||||
861784 862677 D
|
||||
862696 863646 D
|
||||
863636 865042 D
|
||||
865053 865919 D
|
||||
865916 866458 D
|
||||
866494 866694 D
|
||||
866681 867601 D
|
||||
867605 867700 D
|
||||
867743 868114 C
|
||||
868189 868740 D
|
||||
868733 869515 C
|
||||
869508 870023 C
|
||||
870112 872583 C
|
||||
872586 875132 C
|
||||
875207 876448 D
|
||||
876429 879281 D
|
||||
879303 880250 D
|
||||
880267 881091 C
|
||||
881085 884213 C
|
||||
884228 886447 C
|
||||
886470 888182 C
|
||||
888297 890318 D
|
||||
890322 893174 D
|
||||
893129 896569 D
|
||||
897096 897740 C
|
||||
897704 899320 C
|
||||
899499 900731 D
|
||||
900796 901782 D
|
||||
901810 903258 D
|
||||
903929 904900 C
|
||||
905120 905227 D
|
||||
905752 905865 C
|
||||
905839 905946 D
|
||||
905928 906032 D
|
||||
906162 906263 D
|
||||
907935 908081 D
|
||||
908407 909591 D
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# include : <none>
|
||||
# selector : count
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 7
|
||||
# alphabet : ACGT
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 910724
|
||||
# valid : 910681
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftA RightA LeftC
|
||||
1 36566 44476 13342 18949
|
||||
1001 36655 44524 13339 18989
|
||||
2001 36782 44547 13364 18962
|
||||
3001 36858 44580 13415 18951
|
||||
4001 37042 44544 13413 19003
|
||||
5001 37142 44434 13449 19062
|
||||
6001 37169 44406 13498 19085
|
||||
7001 37270 44326 13557 19097
|
||||
8001 37350 44361 13624 19095
|
||||
9001 37490 44294 13596 19130
|
||||
10001 37685 44156 13595 19223
|
||||
11001 37856 44039 13616 19296
|
||||
12001 37999 43953 13627 19316
|
||||
13001 38183 43804 13615 19393
|
||||
14001 38354 43662 13612 19477
|
||||
15001 38499 43597 13580 19499
|
||||
16001 38618 43545 13630 19522
|
||||
17001 38733 43519 13644 19561
|
||||
18001 38821 43555 13691 19562
|
||||
19001 38914 43623 13756 19502
|
||||
20001 38997 43648 13772 19512
|
||||
21001 39060 43694 13800 19517
|
||||
22001 39024 43853 13901 19448
|
||||
23001 39089 43809 13992 19469
|
||||
24001 39182 43772 14043 19474
|
||||
25001 39136 43869 14174 19413
|
||||
26001 39122 43859 14280 19413
|
||||
27001 39222 43861 14291 19445
|
||||
28001 39293 43803 14333 19478
|
||||
29001 39315 43737 14433 19504
|
||||
30001 39438 43681 14438 19496
|
||||
31001 39538 43610 14449 19529
|
||||
32001 39613 43536 14519 19577
|
||||
33001 39628 43599 14582 19577
|
||||
34001 39659 43600 14655 19583
|
||||
35001 39668 43582 14731 19583
|
||||
36001 39687 43550 14826 19595
|
||||
37001 39731 43486 14903 19605
|
||||
38001 39764 43521 14956 19608
|
||||
39001 39817 43536 15005 19611
|
||||
40001 39896 43487 15067 19651
|
||||
41001 39988 43397 15092 19711
|
||||
42001 40046 43362 15156 19736
|
||||
43001 40058 43363 15239 19739
|
||||
44001 40030 43469 15307 19699
|
||||
45001 40047 43557 15341 19666
|
||||
46001 40116 43543 15419 19639
|
||||
47001 40081 43661 15506 19579
|
||||
48001 40077 43708 15542 19583
|
||||
49001 40072 43692 15558 19582
|
||||
50001 40160 43643 15578 19604
|
||||
51001 40169 43648 15668 19572
|
||||
52001 40125 43775 15810 19510
|
||||
53001 40112 43869 15910 19467
|
||||
54001 40149 43910 15984 19425
|
||||
55001 40164 43887 16083 19445
|
||||
56001 40209 43936 16151 19406
|
||||
57001 40231 44014 16226 19381
|
||||
58001 40357 43954 16265 19391
|
||||
59001 40386 43993 16310 19369
|
||||
60001 40458 44005 16377 19346
|
||||
61001 40528 44049 16477 19328
|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
557001 38510 35813 13811 13632
|
||||
558001 38392 35827 13755 13620
|
||||
559001 38358 35822 13660 13623
|
||||
560001 38391 35879 13509 13612
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
578001 37234 35663 12999 13721
|
||||
579001 37214 35633 12978 13726
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
588001 37611 35367 12822 13872
|
||||
589001 37633 35293 12825 13879
|
||||
590001 37597 35304 12861 13868
|
||||
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|
||||
592001 37780 35293 12791 13864
|
||||
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|
||||
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|
||||
595001 37756 35378 12830 13823
|
||||
596001 37825 35363 12807 13840
|
||||
597001 37819 35394 12762 13829
|
||||
598001 37793 35406 12813 13806
|
||||
599001 37753 35414 12838 13790
|
||||
600001 37727 35423 12865 13785
|
||||
601001 37601 35468 12861 13819
|
||||
602001 37523 35566 12882 13796
|
||||
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|
||||
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|
||||
605001 37473 35566 12960 13771
|
||||
606001 37422 35621 12993 13761
|
||||
607001 37398 35683 13061 13730
|
||||
608001 37446 35670 13054 13750
|
||||
609001 37443 35705 13078 13768
|
||||
610001 37397 35712 13052 13796
|
||||
611001 37391 35670 13017 13855
|
||||
612001 37351 35699 13002 13870
|
||||
613001 37326 35703 12997 13857
|
||||
614001 37278 35717 12985 13854
|
||||
615001 37217 35767 13027 13808
|
||||
616001 37102 35811 13072 13787
|
||||
617001 37023 35835 13105 13791
|
||||
618001 36902 35905 13139 13765
|
||||
619001 36869 35944 13136 13787
|
||||
620001 36861 35954 13126 13775
|
||||
621001 36896 35915 13121 13763
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
635001 36278 36106 13478 13406
|
||||
636001 36192 36153 13502 13421
|
||||
637001 36098 36239 13559 13389
|
||||
638001 36147 36188 13520 13417
|
||||
639001 36141 36224 13524 13400
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
646001 36494 36201 13382 13336
|
||||
647001 36519 36230 13380 13334
|
||||
648001 36455 36295 13417 13309
|
||||
649001 36442 36260 13444 13282
|
||||
650001 36456 36256 13500 13250
|
||||
651001 36361 36337 13523 13234
|
||||
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|
||||
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|
||||
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|
||||
655001 36337 36331 13534 13278
|
||||
656001 36340 36264 13551 13296
|
||||
657001 36363 36189 13553 13338
|
||||
658001 36278 36178 13612 13323
|
||||
659001 36197 36150 13647 13361
|
||||
660001 36172 36049 13685 13395
|
||||
661001 36068 36112 13760 13323
|
||||
662001 36063 36075 13748 13312
|
||||
663001 36067 36037 13717 13318
|
||||
664001 36053 36083 13687 13306
|
||||
665001 36054 36169 13607 13302
|
||||
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|
||||
667001 35985 36246 13600 13310
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
674001 35891 36657 13600 13246
|
||||
675001 35939 36728 13579 13249
|
||||
676001 35912 36812 13576 13239
|
||||
677001 35846 36866 13580 13244
|
||||
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|
||||
679001 35815 36988 13621 13206
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
684001 35742 37038 13813 13160
|
||||
685001 35702 37008 13824 13191
|
||||
686001 35659 37027 13851 13177
|
||||
687001 35674 37023 13805 13206
|
||||
688001 35651 37064 13778 13180
|
||||
689001 35675 37056 13781 13190
|
||||
690001 35667 37027 13746 13188
|
||||
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|
||||
692001 35645 36926 13727 13264
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
697001 35504 36746 13732 13371
|
||||
698001 35460 36719 13755 13420
|
||||
699001 35478 36687 13760 13402
|
||||
700001 35398 36682 13841 13361
|
||||
701001 35337 36680 13860 13356
|
||||
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|
||||
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|
||||
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|
||||
705001 35303 36588 13885 13465
|
||||
706001 35286 36597 13872 13451
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
714001 35431 36567 13790 13481
|
||||
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|
||||
716001 35586 36598 13782 13427
|
||||
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|
||||
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|
||||
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|
||||
720001 35624 36709 13755 13362
|
||||
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|
||||
722001 35682 36708 13752 13342
|
||||
723001 35722 36694 13766 13287
|
||||
724001 35694 36732 13810 13259
|
||||
725001 35652 36736 13862 13226
|
||||
726001 35714 36736 13871 13227
|
||||
727001 35704 36811 13858 13221
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
732001 35909 37005 13774 13195
|
||||
733001 35948 36982 13785 13222
|
||||
734001 35941 37022 13768 13226
|
||||
735001 35919 37057 13762 13202
|
||||
736001 35967 37028 13723 13224
|
||||
737001 36011 36975 13719 13255
|
||||
738001 36000 37007 13725 13230
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
744001 36159 36855 13477 13341
|
||||
745001 36154 36871 13419 13365
|
||||
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|
||||
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|
||||
748001 36091 36723 13425 13389
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
763001 36249 36312 13286 13545
|
||||
764001 36271 36391 13254 13511
|
||||
765001 36343 36486 13220 13489
|
||||
766001 36404 36476 13160 13505
|
||||
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|
||||
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|
||||
769001 36315 36478 13275 13429
|
||||
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|
||||
771001 36196 36435 13339 13435
|
||||
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|
||||
773001 36128 36439 13381 13398
|
||||
774001 36046 36434 13377 13383
|
||||
775001 36111 36440 13332 13393
|
||||
776001 36073 36467 13299 13412
|
||||
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|
||||
778001 36098 36590 13309 13380
|
||||
779001 36154 36602 13302 13390
|
||||
780001 36216 36632 13304 13383
|
||||
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|
||||
782001 36348 36652 13288 13403
|
||||
783001 36383 36666 13303 13398
|
||||
784001 36427 36637 13319 13409
|
||||
785001 36494 36557 13300 13417
|
||||
786001 36536 36562 13311 13397
|
||||
787001 36617 36544 13238 13422
|
||||
788001 36673 36482 13250 13435
|
||||
789001 36743 36359 13248 13450
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
799001 37007 36783 13203 13361
|
||||
800001 37023 36875 13175 13427
|
||||
801001 37035 37050 13199 13418
|
||||
802001 37059 37164 13182 13445
|
||||
803001 37043 37182 13203 13500
|
||||
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|
||||
805001 36947 37372 13228 13627
|
||||
806001 36917 37506 13279 13592
|
||||
807001 36869 37698 13301 13604
|
||||
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|
||||
809001 36787 38024 13327 13626
|
||||
810001 36775 38201 13342 13608
|
||||
811001 36753 38381 13365 13605
|
||||
812001 36703 38522 13411 13592
|
||||
813001 36674 38618 13392 13634
|
||||
814001 36682 38743 13361 13654
|
||||
815001 36679 38839 13351 13698
|
||||
816001 36655 38924 13385 13761
|
||||
817001 36625 39023 13444 13759
|
||||
818001 36620 39050 13459 13804
|
||||
819001 36604 39027 13465 13914
|
||||
820001 36589 39107 13454 13997
|
||||
821001 36566 39179 13453 14051
|
||||
822001 36536 39136 13451 14190
|
||||
823001 36563 39123 13419 14279
|
||||
824001 36521 39225 13440 14299
|
||||
825001 36540 39296 13440 14347
|
||||
826001 36573 39330 13421 14434
|
||||
827001 36547 39436 13465 14445
|
||||
828001 36585 39545 13480 14448
|
||||
829001 36616 39621 13437 14535
|
||||
830001 36580 39631 13433 14576
|
||||
831001 36596 39654 13433 14675
|
||||
832001 36613 39663 13404 14754
|
||||
833001 36684 39685 13380 14838
|
||||
834001 36705 39735 13361 14909
|
||||
835001 36705 39779 13344 14963
|
||||
836001 36701 39836 13329 15010
|
||||
837001 36697 39910 13277 15076
|
||||
838001 36728 40008 13250 15095
|
||||
839001 36747 40027 13223 15183
|
||||
840001 36760 40057 13223 15247
|
||||
841001 36818 40030 13222 15308
|
||||
842001 36802 40055 13226 15348
|
||||
843001 36856 40109 13202 15439
|
||||
844001 36885 40098 13195 15514
|
||||
845001 36986 40064 13166 15541
|
||||
846001 37007 40067 13196 15562
|
||||
847001 36977 40170 13224 15578
|
||||
848001 37014 40164 13237 15684
|
||||
849001 37032 40134 13216 15820
|
||||
850001 37030 40117 13235 15908
|
||||
851001 36986 40139 13252 15992
|
||||
852001 37010 40179 13232 16087
|
||||
853001 36984 40203 13260 16163
|
||||
854001 36946 40243 13277 16233
|
||||
855001 36921 40367 13284 16269
|
||||
856001 36944 40379 13310 16321
|
||||
857001 36897 40471 13337 16387
|
||||
858001 36849 40531 13350 16482
|
||||
859001 36898 40561 13354 16555
|
||||
860001 36844 40647 13378 16620
|
||||
861001 36782 40816 13374 16640
|
||||
862001 36723 40938 13394 16680
|
||||
863001 36695 40986 13420 16719
|
||||
864001 36665 41055 13400 16769
|
||||
865001 36638 41193 13373 16807
|
||||
866001 36621 41250 13382 16852
|
||||
867001 36687 41267 13351 16904
|
||||
868001 36693 41337 13362 16931
|
||||
869001 36655 41559 13391 16918
|
||||
870001 36590 41740 13367 16942
|
||||
871001 36585 41968 13392 16942
|
||||
872001 36531 42204 13427 16922
|
||||
873001 36477 42391 13445 16879
|
||||
874001 36414 42603 13474 16873
|
||||
875001 36270 42774 13522 16873
|
||||
876001 36298 42787 13538 16934
|
||||
877001 36326 42891 13539 16953
|
||||
878001 36410 42932 13513 16980
|
||||
879001 36491 42940 13492 17035
|
||||
880001 36486 43037 13498 17089
|
||||
881001 36493 43088 13456 17181
|
||||
882001 36493 43190 13429 17244
|
||||
883001 36473 43283 13428 17259
|
||||
884001 36445 43430 13459 17254
|
||||
885001 36433 43559 13434 17322
|
||||
886001 36424 43694 13459 17331
|
||||
887001 36454 43751 13396 17385
|
||||
888001 36420 43833 13368 17465
|
||||
889001 36430 43830 13386 17566
|
||||
890001 36483 43847 13405 17641
|
||||
891001 36604 43805 13366 17731
|
||||
892001 36580 43843 13390 17782
|
||||
893001 36585 43848 13395 17832
|
||||
894001 36640 43862 13386 17854
|
||||
895001 36631 43887 13394 17925
|
||||
896001 36647 43958 13406 17947
|
||||
897001 36678 44034 13383 17989
|
||||
898001 36627 44188 13420 17998
|
||||
899001 36559 44298 13420 18077
|
||||
900001 36551 44333 13404 18203
|
||||
901001 36552 44302 13423 18294
|
||||
902001 36454 44375 13436 18320
|
||||
903001 36354 44481 13430 18368
|
||||
904001 36361 44481 13434 18448
|
||||
905001 36283 44559 13494 18480
|
||||
906001 36286 44632 13483 18514
|
||||
907001 36280 44652 13465 18586
|
||||
908001 36335 44596 13458 18663
|
||||
909001 36476 44490 13410 18761
|
||||
910001 36580 44431 13351 18869
|
||||
@@ -0,0 +1,924 @@
|
||||
# input : borbu1.fst
|
||||
# include : <none>
|
||||
# selector : count
|
||||
# distance : chi
|
||||
# phase : 7
|
||||
# alphabet : ACGT
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 910681
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftA RightA LeftC RightC LeftG RightG LeftT RightX chiACGT/not*s chiA chiC chiG chiT
|
||||
1 36566 44476 13342 18949 18446 13078 45482 37333 58.8352 27.7857 31.2025 -30.2337 -28.3172
|
||||
1001 36655 44524 13339 18989 18400 13116 45442 37207 58.7935 27.6183 31.4238 -29.7644 -28.6447
|
||||
2001 36782 44547 13364 18962 18360 13151 45330 37176 58.1183 27.2282 31.1356 -29.3443 -28.3876
|
||||
3001 36858 44580 13415 18951 18332 13135 45231 37170 57.6715 27.0593 30.7717 -29.2971 -28.0817
|
||||
4001 37042 44544 13413 19003 18275 13135 45106 37154 57.1282 26.2645 31.0479 -29.0021 -27.7257
|
||||
5001 37142 44434 13449 19062 18276 13084 44969 37256 56.6039 25.5309 31.1301 -29.3188 -26.8981
|
||||
6001 37169 44406 13498 19085 18259 13071 44910 37274 56.2905 25.3384 30.9516 -29.3103 -26.6362
|
||||
7001 37270 44326 13557 19097 18246 13048 44763 37365 55.4966 24.7015 30.6578 -29.3836 -25.8148
|
||||
8001 37350 44361 13624 19095 18202 13048 44662 37332 54.9699 24.5292 30.2475 -29.1539 -25.5959
|
||||
9001 37490 44294 13596 19130 18174 13026 44578 37386 54.6109 23.7945 30.5925 -29.1433 -25.1186
|
||||
10001 37685 44156 13595 19223 18183 12999 44375 37458 54.0676 22.6222 31.0685 -29.3555 -24.1773
|
||||
11001 37856 44039 13616 19296 18200 12945 44166 37556 53.5572 21.6083 31.3107 -29.7753 -23.1198
|
||||
12001 37999 43953 13627 19316 18196 12894 44016 37673 53.0257 20.8009 31.3456 -30.0682 -22.1903
|
||||
13001 38183 43804 13615 19393 18164 12882 43876 37757 52.4797 19.6334 31.8046 -29.976 -21.414
|
||||
14001 38354 43662 13612 19477 18140 12883 43732 37814 51.9943 18.537 32.2439 -29.8451 -20.7215
|
||||
15001 38499 43597 13580 19499 18134 12835 43625 37905 51.8044 17.7951 32.5457 -30.1098 -20.0301
|
||||
16001 38618 43545 13630 19522 18109 12831 43481 37938 51.1894 17.1913 32.3615 -30.0045 -19.4234
|
||||
17001 38733 43519 13644 19561 18110 12798 43351 37958 51.0247 16.6903 32.4729 -30.2135 -18.9105
|
||||
18001 38821 43555 13691 19562 18098 12785 43228 37934 50.675 16.4966 32.1972 -30.2314 -18.5801
|
||||
19001 38914 43623 13756 19502 18058 12789 43109 37923 49.933 16.391 31.5078 -30 -18.2181
|
||||
20001 38997 43648 13772 19512 18018 12770 43050 37907 49.7284 16.1785 31.4626 -29.9091 -18.0755
|
||||
21001 39060 43694 13800 19517 17962 12774 43015 37852 49.4553 16.1087 31.321 -29.5921 -18.1558
|
||||
22001 39024 43853 13901 19448 17900 12771 43012 37765 49.0158 16.7741 30.375 -29.2866 -18.4615
|
||||
23001 39089 43809 13992 19469 17761 12792 42995 37767 48.0812 16.3934 29.9415 -28.4277 -18.3964
|
||||
24001 39182 43772 14043 19474 17702 12783 42910 37808 47.4363 15.9365 29.6652 -28.173 -17.9579
|
||||
25001 39136 43869 14174 19413 17665 12748 42862 37807 46.8913 16.428 28.5866 -28.1949 -17.7979
|
||||
26001 39122 43859 14280 19413 17601 12771 42834 37794 46.2121 16.4442 27.9641 -27.7147 -17.7496
|
||||
27001 39222 43861 14291 19445 17526 12743 42798 37788 45.9748 16.0942 28.0606 -27.4917 -17.6485
|
||||
28001 39293 43803 14333 19478 17461 12767 42750 37788 45.4127 15.6467 27.9814 -26.9977 -17.4834
|
||||
29001 39315 43737 14433 19504 17377 12800 42712 37795 44.5834 15.3454 27.5277 -26.3469 -17.3281
|
||||
30001 39438 43681 14438 19496 17266 12799 42695 37860 43.8681 14.7184 27.4583 -25.7616 -17.0341
|
||||
31001 39538 43610 14449 19529 17167 12794 42683 37903 43.3672 14.1228 27.5599 -25.2632 -16.837
|
||||
32001 39613 43536 14519 19577 17161 12763 42544 37960 42.9281 13.606 27.393 -25.4233 -16.1548
|
||||
33001 39628 43599 14582 19577 17077 12780 42550 37880 42.5377 13.766 27.0269 -24.8673 -16.4655
|
||||
34001 39659 43600 14655 19583 17064 12754 42459 37899 42.1615 13.6594 26.6336 -24.9589 -16.0848
|
||||
35001 39668 43582 14731 19583 17048 12801 42390 37870 41.5803 13.5666 26.1938 -24.5813 -15.9535
|
||||
36001 39687 43550 14826 19595 16976 12801 42348 37890 40.9033 13.3908 25.7057 -24.1937 -15.7368
|
||||
37001 39731 43486 14903 19605 16946 12829 42257 37916 40.1799 13.0181 25.3126 -23.8584 -15.3299
|
||||
38001 39764 43521 14956 19608 16881 12888 42237 37819 39.6863 13.0209 25.024 -23.1414 -15.6121
|
||||
39001 39817 43536 15005 19611 16793 12941 42223 37748 39.0927 12.884 24.7579 -22.3373 -15.8219
|
||||
40001 39896 43487 15067 19651 16711 12952 42164 37746 38.4774 12.4384 24.6035 -21.824 -15.6263
|
||||
41001 39988 43397 15092 19711 16631 12967 42127 37761 38.0076 11.808 24.761 -21.2958 -15.4445
|
||||
42001 40046 43362 15156 19736 16557 12996 42079 37742 37.3864 11.4843 24.5206 -20.7128 -15.3483
|
||||
43001 40058 43363 15239 19739 16485 13033 42056 37701 36.761 11.4454 24.0627 -20.0907 -15.4182
|
||||
44001 40030 43469 15307 19699 16431 13059 42070 37609 36.4418 11.9037 23.4759 -19.6344 -15.8013
|
||||
45001 40047 43557 15341 19666 16335 13097 42115 37516 36.1046 12.1418 23.1174 -18.8726 -16.2951
|
||||
46001 40116 43543 15419 19639 16282 13124 42021 37530 35.2283 11.8509 22.5398 -18.4144 -15.9204
|
||||
47001 40081 43661 15506 19579 16205 13111 42046 37485 34.8423 12.3737 21.7464 -18.0689 -16.1706
|
||||
48001 40077 43708 15542 19583 16098 13084 42121 37461 34.7336 12.5467 21.5632 -17.642 -16.5163
|
||||
49001 40072 43692 15558 19582 16001 13086 42207 37476 34.5003 12.5103 21.4679 -17.0904 -16.7574
|
||||
50001 40160 43643 15578 19604 15893 13078 42207 37511 33.9944 12.0341 21.4658 -16.537 -16.6297
|
||||
51001 40169 43648 15668 19572 15811 13065 42190 37551 33.2853 12.0193 20.7982 -16.1582 -16.4255
|
||||
52001 40125 43775 15810 19510 15767 13031 42136 37520 32.7692 12.6037 19.6892 -16.1211 -16.3528
|
||||
53001 40112 43869 15910 19467 15688 13005 42128 37495 32.3446 12.9669 18.913 -15.8377 -16.4164
|
||||
54001 40149 43910 15984 19425 15554 12996 42151 37505 31.6676 12.9747 18.288 -15.1375 -16.4591
|
||||
55001 40164 43887 16083 19445 15473 13000 42118 37504 31.068 12.8442 17.8383 -14.6543 -16.3492
|
||||
56001 40209 43936 16151 19406 15438 12993 42040 37501 30.5341 12.8508 17.2635 -14.499 -16.0916
|
||||
57001 40231 44014 16226 19381 15402 13023 41979 37418 30.1752 13.0361 16.7215 -14.1091 -16.1842
|
||||
58001 40357 43954 16265 19391 15346 13025 41870 37466 29.3576 12.3905 16.5564 -13.7782 -15.633
|
||||
59001 40386 43993 16310 19369 15271 13006 41871 37468 29.0213 12.4199 16.1964 -13.468 -15.6292
|
||||
60001 40458 44005 16377 19346 15223 13011 41780 37474 28.3366 12.2073 15.7102 -13.1629 -15.293
|
||||
61001 40528 44049 16477 19328 15162 13005 41671 37454 27.6319 12.1096 15.0686 -12.8508 -14.9891
|
||||
62001 40558 44072 16546 19329 15094 12990 41640 37444 27.2407 12.0831 14.6957 -12.5528 -14.9171
|
||||
63001 40627 44134 16617 19291 15057 12991 41536 37420 26.6642 12.0471 14.1121 -12.3354 -14.6469
|
||||
64001 40798 44057 16647 19336 15048 12960 41344 37483 25.9016 11.1891 14.1765 -12.4757 -13.7506
|
||||
65001 40948 43949 16669 19414 15080 12933 41140 37540 25.3806 10.3009 14.4516 -12.8271 -12.833
|
||||
66001 40975 43930 16708 19421 15082 12862 41072 37623 25.1813 10.1425 14.2741 -13.2796 -12.2935
|
||||
67001 41028 43833 16772 19456 14983 12924 41054 37623 24.3537 9.63023 14.1022 -12.3246 -12.2307
|
||||
68001 41181 43686 16801 19536 14900 12947 40955 37667 23.543 8.60009 14.3486 -11.7027 -11.725
|
||||
69001 41251 43635 16850 19589 14830 12946 40906 37666 23.1134 8.18383 14.3494 -11.3036 -11.5575
|
||||
70001 41263 43701 16901 19574 14756 12997 40917 37564 22.8163 8.36533 13.9968 -10.558 -11.9676
|
||||
71001 41310 43708 16933 19572 14758 13002 40836 37554 22.5145 8.22549 13.8131 -10.5386 -11.7209
|
||||
72001 41535 43641 16926 19603 14711 13054 40665 37538 21.7296 7.21734 14.0073 -9.94355 -11.1807
|
||||
73001 41741 43566 16932 19642 14721 13076 40443 37552 21.0797 6.24971 14.1713 -9.86586 -10.3505
|
||||
74001 41932 43511 16947 19656 14716 13066 40242 37603 20.4238 5.40315 14.1604 -9.89852 -9.45731
|
||||
75001 42172 43400 16929 19704 14682 13049 40054 37683 19.9076 4.1992 14.4995 -9.80553 -8.50266
|
||||
76001 42364 43215 16881 19800 14661 13045 39931 37775 19.8702 2.91158 15.2427 -9.7071 -7.73187
|
||||
77001 42578 43156 16880 19806 14619 13017 39760 37856 19.4124 1.97658 15.2782 -9.63517 -6.83181
|
||||
78001 42757 43212 16867 19809 14580 13004 39633 37810 19.2707 1.55439 15.3638 -9.4877 -6.54837
|
||||
79001 42790 43225 16929 19817 14541 12992 39577 37801 18.8968 1.48578 15.0675 -9.33377 -6.38217
|
||||
80001 42882 43187 16948 19844 14460 12987 39547 37817 18.6218 1.0422 15.0998 -8.88964 -6.21737
|
||||
81001 42915 43228 16981 19867 14425 13019 39516 37721 18.4641 1.06901 15.0362 -8.48569 -6.45637
|
||||
82001 42942 43251 17022 19860 14431 13014 39442 37709 18.2092 1.05636 14.7802 -8.55121 -6.23553
|
||||
83001 43037 43266 17074 19844 14373 13014 39353 37710 17.6326 0.783371 14.4191 -8.20979 -5.91489
|
||||
84001 43090 43353 17169 19805 14316 13043 39261 37634 16.8044 0.895823 13.7096 -7.6955 -5.86608
|
||||
85001 43194 43474 17233 19713 14309 13005 39100 37643 16.0403 0.952407 12.9032 -7.88941 -5.25823
|
||||
86001 43268 43588 17264 19670 14259 12972 39045 37604 15.679 1.08839 12.5211 -7.79769 -5.20246
|
||||
87001 43417 43555 17241 19703 14226 12974 38952 37602 15.6756 0.470522 12.8107 -7.58992 -4.87679
|
||||
88001 43542 43558 17317 19668 14221 12960 38756 37648 14.9672 0.0567954 12.2264 -7.64717 -4.00607
|
||||
89001 43680 43559 17333 19678 14184 12980 38638 37618 14.6886 -0.409666 12.1893 -7.30516 -3.69371
|
||||
90001 43752 43652 17386 19651 14180 13011 38517 37521 14.2104 -0.338247 11.7693 -7.08928 -3.61197
|
||||
91001 43831 43757 17452 19569 14179 13013 38373 37496 13.4632 -0.25004 11.0026 -7.07095 -3.18396
|
||||
92001 43833 43865 17543 19497 14164 13037 38295 37436 12.6305 0.108058 10.1529 -6.83332 -3.12145
|
||||
93001 43844 43958 17634 19420 14070 13066 38288 37391 11.5763 0.38604 9.27905 -6.09409 -3.25944
|
||||
94001 43799 44055 17722 19357 13984 13098 38331 37325 10.7333 0.864994 8.49175 -5.38313 -3.65622
|
||||
95001 43852 44114 17775 19322 13890 13118 38319 37281 10.0802 0.884687 8.0328 -4.69682 -3.77396
|
||||
96001 43846 44246 17828 19278 13798 13147 38364 37164 9.65777 1.34901 7.52826 -3.96518 -4.36523
|
||||
97001 43841 44335 17852 19262 13715 13151 38428 37086 9.59294 1.66621 7.32067 -3.43951 -4.88117
|
||||
98001 43902 44417 17918 19210 13652 13170 38364 37037 8.94307 1.73553 6.70689 -2.94164 -4.83021
|
||||
99001 43941 44475 17946 19205 13628 13193 38321 36961 8.80426 1.79848 6.5336 -2.65471 -4.9543
|
||||
100001 44030 44507 17980 19270 13653 13148 38173 36909 8.83394 1.60568 6.68554 -3.08329 -4.61056
|
||||
101001 44182 44513 17993 19321 13630 13172 38031 36828 8.69813 1.11403 6.87652 -2.79614 -4.39447
|
||||
102001 44291 44604 18064 19272 13571 13217 37910 36741 7.948 1.05241 6.25347 -2.16145 -4.27615
|
||||
103001 44308 44739 18198 19199 13552 13202 37778 36694 7.01691 1.44695 5.17795 -2.13837 -3.96983
|
||||
104001 44308 44889 18291 19106 13471 13195 37766 36644 6.42813 1.94798 4.21613 -1.68874 -4.11079
|
||||
105001 44372 44984 18308 19109 13336 13208 37820 36533 6.65081 2.04995 4.14263 -0.784221 -4.71748
|
||||
106001 44477 44969 18363 19115 13214 13204 37782 36546 6.19294 1.64769 3.88615 -0.0601028 -4.53121
|
||||
107001 44485 45057 18438 19066 13185 13238 37728 36473 5.9584 1.91415 3.2445 0.327474 -4.60484
|
||||
108001 44549 45087 18470 19009 13205 13240 37612 36498 5.26994 1.7996 2.78586 0.21665 -4.08972
|
||||
109001 44604 45113 18503 19027 13215 13249 37514 36445 5.06941 1.70197 2.70654 0.210425 -3.92842
|
||||
110001 44660 45136 18585 19035 13191 13289 37400 36374 4.74739 1.5911 2.32178 0.603661 -3.77505
|
||||
111001 44599 45193 18656 19067 13183 13303 37398 36271 5.11783 1.98492 2.11781 0.738774 -4.14986
|
||||
112001 44502 45187 18741 19074 13137 13329 37456 36244 5.43031 2.28991 1.71413 1.18163 -4.46207
|
||||
113001 44415 45197 18858 19075 13074 13355 37489 36207 5.77533 2.61492 1.11587 1.72991 -4.72005
|
||||
114001 44485 45094 18977 19045 13079 13332 37295 36363 4.29862 2.03738 0.350443 1.55821 -3.43167
|
||||
115001 44516 45064 18984 19031 13119 13315 37217 36424 3.66103 1.83357 0.242768 1.20695 -2.91985
|
||||
116001 44561 45065 18953 19020 13155 13308 37167 36441 3.31626 1.68613 0.345536 0.941955 -2.67355
|
||||
117001 44572 45038 18966 19011 13145 13344 37153 36441 3.29546 1.55934 0.232626 1.22413 -2.6222
|
||||
118001 44528 44986 19009 19010 13134 13339 37165 36499 3.15471 1.53343 0.00683848 1.26137 -2.45146
|
||||
119001 44414 45104 19077 18956 13069 13368 37276 36406 4.39973 2.3088 -0.61874 1.84035 -3.2027
|
||||
120001 44401 45231 19089 18880 13061 13398 37285 36325 5.06444 2.77496 -1.07088 2.0732 -3.53599
|
||||
121001 44337 45312 19096 18821 13043 13436 37360 36265 5.8921 3.25898 -1.41056 2.41656 -4.03317
|
||||
122001 44354 45295 19091 18814 13045 13451 37346 36274 5.80795 3.14542 -1.42106 2.49565 -3.94853
|
||||
123001 44279 45303 19152 18807 13013 13494 37392 36230 6.47375 3.42391 -1.76906 2.9558 -4.28018
|
||||
124001 44139 45330 19228 18805 12993 13484 37476 36215 7.15839 3.98439 -2.16729 3.01892 -4.64285
|
||||
125001 44019 45370 19298 18749 12931 13484 37588 36231 8.05375 4.52131 -2.81286 3.40394 -4.99216
|
||||
126001 43930 45405 19316 18757 12883 13489 37707 36183 8.82718 4.93755 -2.86315 3.73307 -5.60412
|
||||
127001 43787 45422 19408 18728 12880 13508 37761 36176 9.54015 5.47673 -3.48039 3.86737 -5.82668
|
||||
128001 43630 45481 19490 18699 12877 13497 37839 36157 10.375 6.20332 -4.04598 3.81914 -6.18094
|
||||
129001 43581 45506 19507 18689 12835 13523 37913 36116 10.986 6.45207 -4.18376 4.23914 -6.60222
|
||||
130001 43556 45543 19533 18665 12823 13562 37924 36064 11.4671 6.65935 -4.43948 4.55095 -6.83566
|
||||
131001 43521 45571 19566 18653 12787 13567 37962 36043 11.9091 6.87068 -4.66844 4.80618 -7.05176
|
||||
132001 43578 45578 19558 18643 12785 13544 37915 36069 11.607 6.70076 -4.67978 4.67903 -6.78438
|
||||
133001 43623 45511 19509 18635 12788 13636 37917 36052 11.5868 6.32775 -4.47248 5.21884 -6.85374
|
||||
134001 43646 45500 19509 18618 12774 13747 37908 35969 12.0818 6.21345 -4.56054 5.97686 -7.13026
|
||||
135001 43718 45494 19513 18595 12764 13775 37842 35970 11.9775 5.95001 -4.69999 6.2081 -6.88679
|
||||
136001 43852 45463 19440 18609 12778 13791 37767 35971 11.3831 5.39448 -4.25763 6.21686 -6.61038
|
||||
137001 43806 45500 19471 18563 12792 13790 37768 35981 11.6008 5.6725 -4.6533 6.12335 -6.57675
|
||||
138001 43800 45451 19465 18616 12778 13798 37794 35969 11.5659 5.53031 -4.34808 6.25898 -6.71604
|
||||
139001 43876 45530 19401 18580 12754 13806 37806 35918 11.7628 5.53555 -4.21013 6.45722 -6.94984
|
||||
140001 43862 45625 19423 18523 12767 13795 37785 35891 12.0231 5.89742 -4.61763 6.30972 -6.97421
|
||||
141001 43859 45622 19446 18510 12744 13809 37788 35893 12.2176 5.89762 -4.8018 6.53785 -6.97766
|
||||
142001 43805 45662 19479 18464 12769 13804 37783 35905 12.4045 6.20972 -5.20989 6.34994 -6.91706
|
||||
143001 43751 45712 19499 18413 12789 13862 37797 35848 12.9951 6.55757 -5.57667 6.57341 -7.18071
|
||||
144001 43671 45774 19511 18391 12804 13928 37850 35742 13.7907 7.03303 -5.75204 6.87537 -7.76941
|
||||
145001 43593 45806 19550 18376 12786 13985 37907 35668 14.5931 7.40274 -6.02751 7.32875 -8.25327
|
||||
146001 43530 45880 19580 18312 12777 13984 37949 35659 15.1618 7.86045 -6.51311 7.37902 -8.43939
|
||||
147001 43592 45911 19598 18292 12777 14019 37869 35612 15.2313 7.75405 -6.70765 7.58872 -8.32376
|
||||
148001 43589 45909 19579 18312 12773 14020 37895 35593 15.253 7.75761 -6.50721 7.61969 -8.48937
|
||||
149001 43564 45960 19587 18323 12795 13994 37890 35557 15.2984 8.01049 -6.49017 7.327 -8.60612
|
||||
150001 43552 45945 19602 18296 12799 14006 37883 35587 15.3327 8.00167 -6.70694 7.37367 -8.46827
|
||||
151001 43517 46025 19598 18269 12818 14005 37903 35535 15.6772 8.38397 -6.82788 7.24908 -8.7358
|
||||
152001 43515 46101 19610 18240 12900 13946 37811 35547 15.3244 8.64107 -7.04015 6.38542 -8.3566
|
||||
153001 43540 46148 19614 18223 12949 13922 37733 35541 15.0924 8.71106 -7.14932 5.93712 -8.0954
|
||||
154001 43462 46185 19655 18215 12962 13961 37757 35472 15.6791 9.09846 -7.39715 6.09057 -8.44038
|
||||
155001 43380 46225 19719 18197 12970 13950 37767 35461 16.1158 9.50814 -7.81378 5.9751 -8.51804
|
||||
156001 43375 46347 19733 18125 12996 13912 37732 35449 16.4058 9.92593 -8.26176 5.58627 -8.43575
|
||||
157001 43364 46358 19735 18115 13035 13892 37702 35468 16.2705 9.99938 -8.32432 5.22476 -8.25524
|
||||
158001 43490 46270 19694 18175 13065 13885 37587 35503 15.2119 9.28299 -7.80321 4.99714 -7.70492
|
||||
159001 43566 46243 19661 18197 13105 13838 37504 35555 14.4341 8.93676 -7.52167 4.46777 -7.20711
|
||||
160001 43580 46185 19615 18250 13122 13785 37519 35613 13.8136 8.69863 -7.01222 4.04401 -7.04449
|
||||
161001 43660 46190 19565 18252 13119 13800 37492 35591 13.5463 8.44431 -6.74927 4.15282 -7.02837
|
||||
162001 43694 46190 19582 18266 13079 13832 37481 35545 13.6918 8.3293 -6.76192 4.59234 -7.16064
|
||||
163001 43712 46199 19571 18241 13093 13827 37460 35566 13.5908 8.29804 -6.83714 4.47577 -7.00521
|
||||
164001 43636 46245 19614 18200 13082 13852 37504 35536 14.2705 8.70636 -7.26893 4.69396 -7.27835
|
||||
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||||
166001 43800 46088 19500 18251 13032 13861 37504 35633 13.1522 7.63536 -6.42577 5.05732 -6.91484
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||||
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||||
168001 43911 46001 19423 18355 12999 13829 37503 35648 12.3083 6.97401 -5.49224 5.06954 -6.85503
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||||
169001 43885 45982 19445 18357 12993 13848 37513 35646 12.455 6.99911 -5.59337 5.2209 -6.899
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170001 43959 45893 19397 18406 12999 13834 37481 35700 11.7019 6.45591 -5.09439 5.09959 -6.58007
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||||
171001 44006 45818 19377 18450 13021 13836 37432 35729 11.1195 6.04985 -4.76371 4.97528 -6.29259
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172001 43971 45796 19385 18496 13025 13862 37455 35679 11.2761 6.09516 -4.56507 5.10667 -6.5637
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173001 44007 45787 19358 18545 13017 13856 37454 35645 11.1214 5.94407 -4.17337 5.1202 -6.68732
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||||
174001 44011 45883 19348 18515 13010 13871 37467 35564 11.5963 6.24761 -4.27837 5.25362 -7.03828
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||||
175001 44063 45905 19328 18497 13013 13908 37432 35523 11.648 6.14504 -4.27024 5.45694 -7.06416
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||||
176001 44083 45878 19326 18474 12998 13921 37428 35561 11.5941 5.98596 -4.38135 5.62637 -6.90941
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||||
177001 44130 45781 19291 18529 12999 13941 37416 35583 11.164 5.50869 -3.91657 5.74065 -6.78192
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||||
178001 44037 45755 19359 18521 12956 13948 37484 35610 11.6633 5.73591 -4.30395 6.04932 -6.92915
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||||
179001 43960 45761 19411 18517 12912 13949 37553 35607 12.2074 6.01528 -4.58876 6.32873 -7.19222
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||||
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||||
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||||
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||||
183001 43657 45696 19582 18555 12946 13919 37651 35664 12.778 6.82385 -5.25722 5.93779 -7.33603
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||||
184001 43692 45610 19579 18561 13011 13850 37554 35813 11.657 6.42089 -5.21093 5.12062 -6.42522
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||||
185001 43694 45546 19579 18638 13002 13785 37561 35865 11.1205 6.20219 -4.8118 4.78553 -6.25656
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||||
186001 43627 45399 19607 18708 13056 13726 37546 36001 10.2753 5.94151 -4.59106 4.09549 -5.69462
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||||
187001 43583 45286 19638 18767 13064 13703 37551 36078 9.8545 5.71528 -4.44279 3.90715 -5.4261
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||||
188001 43480 45180 19680 18827 13068 13715 37608 36112 9.87319 5.71194 -4.34517 3.95487 -5.50746
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||||
189001 43361 45166 19725 18853 13052 13740 37697 36076 10.4785 6.06652 -4.43963 4.20326 -5.96808
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||||
190001 43213 45187 19800 18851 13037 13761 37785 36036 11.3305 6.63928 -4.8271 4.4227 -6.43724
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||||
191001 43168 45074 19811 18932 13006 13767 37850 36062 11.2248 6.41631 -4.46573 4.65089 -6.57673
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||||
192001 43207 44949 19813 19001 13004 13787 37811 36098 10.6769 5.86708 -4.12156 4.78374 -6.30099
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||||
193001 43238 44930 19811 19010 12993 13796 37793 36099 10.5784 5.69829 -4.06536 4.90611 -6.23182
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||||
194001 43210 44874 19834 19036 12980 13818 37811 36107 10.6444 5.60667 -4.04758 5.11909 -6.2675
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||||
195001 43232 44713 19864 19138 13019 13788 37719 36197 9.58403 4.99142 -3.67788 4.69537 -5.60054
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||||
196001 43244 44593 19853 19237 13014 13765 37723 36241 9.01005 4.5491 -3.11737 4.58783 -5.45165
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||||
197001 43273 44579 19837 19238 13020 13708 37704 36311 8.5161 4.40364 -3.03197 4.20685 -5.12263
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||||
198001 43389 44536 19784 19257 13041 13703 37621 36340 7.78781 3.86688 -2.66804 4.04732 -4.71148
|
||||
199001 43486 44516 19708 19330 12996 13732 37644 36259 7.87009 3.46819 -1.91574 4.49973 -5.09827
|
||||
200001 43604 44398 19660 19378 12966 13758 37604 36303 7.45484 2.67265 -1.42986 4.84264 -4.78915
|
||||
201001 43573 44364 19676 19382 12975 13719 37610 36372 7.12607 2.66352 -1.49022 4.55157 -4.5551
|
||||
202001 43555 44376 19676 19355 12960 13709 37643 36397 7.23255 2.76478 -1.6274 4.58432 -4.58272
|
||||
203001 43568 44407 19673 19339 12985 13655 37609 36436 6.80396 2.82607 -1.69275 4.10352 -4.31311
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||||
204001 43678 44396 19643 19341 13012 13610 37502 36490 5.9554 2.41676 -1.53128 3.66363 -3.72278
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||||
205001 43784 44380 19559 19364 13024 13559 37468 36533 5.25232 2.00594 -0.989266 3.28062 -3.4383
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||||
206001 43896 44289 19474 19403 13040 13508 37425 36636 4.30542 1.3221 -0.360961 2.87158 -2.90042
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||||
207001 43965 44265 19412 19420 13069 13482 37389 36669 3.80076 1.00867 0.0397263 2.53388 -2.64693
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208001 44063 44282 19351 19423 13112 13453 37309 36678 3.23037 0.735492 0.364776 2.09146 -2.321
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||||
209001 44155 44314 19305 19425 13125 13447 37250 36649 3.07365 0.534566 0.609758 1.97535 -2.21083
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||||
210001 44264 44314 19282 19442 13137 13405 37152 36674 2.5476 0.167999 0.813074 1.64501 -1.75923
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211001 44344 44236 19264 19492 13140 13407 37086 36701 2.48338 -0.365485 1.15642 1.63729 -1.41971
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212001 44429 44155 19202 19564 13182 13360 37021 36757 2.52314 -0.923212 1.83685 1.09116 -0.974315
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||||
213001 44475 44100 19205 19559 13192 13323 36962 36854 2.37184 -1.26262 1.79627 0.80307 -0.399886
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||||
214001 44513 44071 19284 19488 13140 13297 36897 36980 2.07469 -1.48767 1.0343 0.964168 0.302989
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||||
215001 44530 44074 19310 19429 13172 13327 36822 37006 2.01929 -1.53453 0.602882 0.950751 0.674805
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||||
216001 44625 44024 19266 19444 13213 13321 36730 37047 2.58739 -2.02114 0.902982 0.661585 1.16469
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||||
217001 44752 43935 19187 19467 13202 13307 36693 37127 3.53865 -2.74603 1.42245 0.643472 1.59498
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||||
218001 44927 43766 19096 19536 13196 13310 36615 37224 5.07169 -3.90102 2.23689 0.698788 2.23878
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||||
219001 44988 43679 19094 19570 13207 13317 36545 37270 5.72381 -4.39862 2.41905 0.67399 2.66612
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||||
220001 44986 43672 19102 19571 13211 13315 36535 37278 5.74885 -4.41563 2.38317 0.637125 2.7324
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||||
221001 45062 43648 19054 19605 13227 13281 36491 37302 6.27813 -4.75008 2.80065 0.330242 2.9831
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||||
222001 45096 43715 19004 19586 13245 13288 36489 37247 6.17363 -4.63665 2.96096 0.262556 2.78907
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||||
223001 45097 43727 19034 19567 13262 13322 36441 37220 6.07156 -4.5994 2.71114 0.366567 2.86787
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||||
224001 45143 43712 19033 19568 13290 13327 36368 37229 6.37065 -4.80325 2.72132 0.225362 3.17138
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||||
225001 45193 43749 19068 19492 13308 13354 36265 37241 6.4144 -4.84449 2.1575 0.280283 3.5975
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||||
226001 45191 43843 19070 19467 13331 13379 36242 37147 5.97873 -4.52026 2.02061 0.292267 3.33829
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||||
227001 45192 43910 19069 19409 13350 13389 36223 37128 5.71598 -4.29743 1.73158 0.237069 3.33915
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||||
228001 45079 43995 19046 19368 13333 13453 36376 37020 4.69885 -3.63468 1.64118 0.731773 2.37474
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||||
229001 45061 44004 19025 19362 13311 13526 36437 36944 4.55281 -3.54439 1.71832 1.31098 1.86924
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||||
230001 45070 44013 19011 19389 13323 13535 36430 36899 4.57554 -3.54403 1.92725 1.29216 1.72958
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||||
231001 45033 44022 19010 19363 13340 13531 36451 36920 4.36809 -3.39044 1.80031 1.16374 1.72908
|
||||
232001 45001 44011 19000 19372 13353 13605 36480 36848 4.33817 -3.32087 1.89733 1.53338 1.35661
|
||||
233001 45123 43969 18944 19398 13371 13635 36396 36834 5.05212 -3.86884 2.31685 1.60504 1.61619
|
||||
234001 45250 43870 18869 19449 13392 13628 36323 36889 6.04856 -4.62527 2.96125 1.43428 2.08945
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||||
235001 45292 43797 18820 19496 13444 13599 36278 36944 6.63024 -5.01136 3.45176 0.941108 2.45886
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||||
236001 45290 43774 18824 19512 13454 13620 36266 36930 6.72258 -5.08243 3.51215 1.00742 2.45191
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||||
237001 45317 43817 18802 19505 13491 13624 36224 36890 6.69799 -5.02685 3.59012 0.806252 2.46068
|
||||
238001 45336 43835 18789 19486 13488 13627 36221 36887 6.68867 -5.02785 3.56181 0.843404 2.46196
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||||
239001 45399 43816 18749 19497 13480 13643 36206 36879 7.06358 -5.30114 3.82394 0.989007 2.48824
|
||||
240001 45407 43815 18756 19465 13491 13661 36180 36894 7.04266 -5.33107 3.6257 1.03096 2.6401
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||||
241001 45428 43859 18709 19457 13499 13612 36198 36907 7.04118 -5.25215 3.82795 0.68556 2.62105
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||||
242001 45485 43921 18698 19402 13502 13603 36149 36909 6.97496 -5.23194 3.60584 0.612748 2.81057
|
||||
243001 45509 44016 18682 19368 13524 13611 36119 36840 6.68359 -4.99117 3.51593 0.52742 2.6681
|
||||
244001 45553 44033 18665 19355 13569 13627 36047 36820 6.82905 -5.07967 3.53784 0.350977 2.86242
|
||||
245001 45564 44111 18647 19311 13569 13673 36054 36740 6.48228 -4.85342 3.40727 0.62938 2.5414
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||||
246001 45554 44040 18646 19355 13563 13655 36071 36785 6.79121 -5.0594 3.63619 0.556921 2.64405
|
||||
247001 45526 44054 18627 19362 13649 13578 36032 36841 6.89746 -4.91947 3.77016 -0.431017 2.99566
|
||||
248001 45487 44138 18620 19321 13763 13454 35964 36922 7.02539 -4.50738 3.59799 -1.87373 3.54729
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||||
249001 45498 44160 18602 19322 13758 13429 35976 36924 7.06725 -4.46981 3.69636 -1.99606 3.50991
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||||
250001 45480 44121 18610 19307 13801 13358 35943 37049 7.57688 -4.54139 3.57859 -2.68883 4.09252
|
||||
251001 45491 44241 18574 19257 13777 13341 35992 36996 7.11087 -4.1742 3.51067 -2.64836 3.71508
|
||||
252001 45446 44308 18615 19224 13810 13288 35963 37015 7.03212 -3.79985 3.12989 -3.17176 3.89302
|
||||
253001 45545 44203 18559 19260 13808 13290 35922 37082 7.83544 -4.48093 3.60379 -3.14747 4.29204
|
||||
254001 45639 44082 18520 19304 13796 13288 35879 37160 8.67557 -5.19806 4.03118 -3.08679 4.73993
|
||||
255001 45626 44029 18505 19331 13817 13236 35886 37238 9.16267 -5.33357 4.24646 -3.53239 4.99973
|
||||
256001 45670 44066 18445 19329 13810 13246 35910 37193 9.14511 -5.3532 4.54923 -3.42812 4.74645
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||||
257001 45715 44041 18410 19336 13880 13228 35830 37229 9.81882 -5.58625 4.7671 -3.95931 5.17703
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||||
258001 45781 44109 18395 19323 13936 13145 35723 37257 10.4537 -5.57542 4.77916 -4.80594 5.67955
|
||||
259001 45851 44109 18351 19333 13984 13111 35649 37281 11.1342 -5.80663 5.05948 -5.30286 6.04439
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||||
260001 45866 44107 18318 19325 13979 13138 35672 37264 11.0526 -5.86289 5.19109 -5.10638 5.89603
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||||
261001 45909 44083 18286 19331 14029 13134 35610 37287 11.5823 -6.08826 5.38711 -5.43115 6.21005
|
||||
262001 45915 44156 18302 19277 14004 13203 35613 37199 10.8525 -5.86235 5.02873 -4.85688 5.87644
|
||||
263001 45937 44198 18319 19246 13999 13195 35579 37196 10.7762 -5.79365 4.78201 -4.87623 5.99284
|
||||
264001 45964 44197 18291 19280 14003 13154 35576 37204 11.1186 -5.88606 5.10149 -5.15262 6.03341
|
||||
265001 46039 44082 18270 19327 13995 13143 35530 37283 11.8813 -6.52028 5.45043 -5.17263 6.49528
|
||||
266001 46119 43994 18235 19365 13938 13129 35542 37347 12.3673 -7.08021 5.82668 -4.91805 6.6845
|
||||
267001 46137 43900 18229 19405 13939 13103 35529 37427 12.9441 -7.45646 6.06116 -5.08451 7.02574
|
||||
268001 46187 43859 18213 19454 13964 13092 35469 37431 13.4901 -7.76196 6.39173 -5.30349 7.26312
|
||||
269001 46231 43872 18191 19430 13946 13097 35465 37437 13.5116 -7.86278 6.38532 -5.1649 7.30006
|
||||
270001 46369 43759 18115 19490 13908 13116 35441 37471 14.3384 -8.69777 7.088 -4.81998 7.51435
|
||||
271001 46336 43831 18132 19437 13897 13128 35468 37440 13.7893 -8.34622 6.73025 -4.67998 7.29976
|
||||
272001 46270 43887 18182 19414 13872 13170 35509 37365 12.9943 -7.94036 6.35135 -4.27108 6.87176
|
||||
273001 46237 43932 18209 19423 13822 13229 35565 37252 12.2544 -7.68007 6.25552 -3.60764 6.24817
|
||||
274001 46167 43951 18246 19417 13799 13301 35621 37167 11.5277 -7.38577 6.03136 -3.0273 5.72678
|
||||
275001 46187 43883 18256 19451 13789 13293 35601 37209 11.8914 -7.68096 6.15144 -3.01615 5.95568
|
||||
276001 46183 43912 18267 19458 13835 13280 35548 37186 11.9622 -7.56995 6.12937 -3.37262 6.07005
|
||||
277001 46233 43828 18225 19501 13824 13292 35551 37212 12.4794 -8.01395 6.56947 -3.23072 6.15764
|
||||
278001 46235 43823 18207 19517 13852 13282 35539 37211 12.6685 -8.03741 6.7447 -3.46033 6.19897
|
||||
279001 46151 43843 18243 19529 13887 13277 35552 37184 12.3811 -7.69359 6.61692 -3.70112 6.05126
|
||||
280001 46086 43811 18252 19550 13861 13317 35634 37155 12.0339 -7.58768 6.67601 -3.29982 5.63763
|
||||
281001 46056 43840 18315 19516 13836 13315 35626 37162 11.626 -7.39094 6.17475 -3.16188 5.69326
|
||||
282001 45993 43882 18356 19491 13840 13305 35644 37155 11.2039 -7.04156 5.83418 -3.2472 5.60018
|
||||
283001 45981 43887 18359 19521 13855 13302 35638 37123 11.2252 -6.98512 5.97037 -3.35571 5.50525
|
||||
284001 45872 43849 18413 19530 13833 13332 35715 37122 10.7199 -6.75381 5.73439 -3.03972 5.21336
|
||||
285001 45815 43831 18449 19552 13847 13302 35722 37148 10.7131 -6.62638 5.6582 -3.30765 5.28257
|
||||
286001 45808 43738 18505 19583 13860 13273 35660 37239 11.1921 -6.91747 5.52363 -3.5636 5.84819
|
||||
287001 45787 43697 18542 19592 13860 13309 35644 37235 11.119 -6.98672 5.37691 -3.34283 5.89344
|
||||
288001 45880 43551 18510 19661 13870 13322 35573 37299 12.1361 -7.78799 5.89126 -3.32323 6.39382
|
||||
289001 45885 43425 18498 19719 13916 13331 35534 37358 12.8441 -8.23162 6.24579 -3.54402 6.75593
|
||||
290001 45857 43397 18486 19758 13917 13369 35574 37309 12.7443 -8.23288 6.50524 -3.31677 6.42786
|
||||
291001 45780 43408 18526 19760 13959 13344 35569 37321 12.6025 -7.94126 6.30746 -3.72122 6.49052
|
||||
292001 45743 43399 18522 19785 13944 13355 35625 37294 12.4172 -7.84952 6.4539 -3.56413 6.18186
|
||||
293001 45766 43372 18522 19774 13957 13324 35589 37363 12.7693 -8.01717 6.39862 -3.8317 6.56922
|
||||
294001 45755 43327 18572 19780 13964 13322 35543 37404 12.9154 -8.13361 6.16927 -3.88583 6.89156
|
||||
295001 45758 43342 18589 19761 13944 13302 35543 37428 12.851 -8.09258 5.9856 -3.88868 6.97927
|
||||
296001 45749 43348 18561 19761 13934 13325 35590 37399 12.6775 -8.04247 6.13082 -3.68788 6.6971
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||||
297001 45690 43412 18558 19750 13912 13308 35674 37363 12.1569 -7.63018 6.09106 -3.66021 6.25087
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||||
298001 45602 43498 18579 19724 13845 13308 35808 37303 11.1849 -7.04736 5.85131 -3.25813 5.53023
|
||||
299001 45526 43488 18648 19679 13782 13328 35878 37338 10.5409 -6.82954 5.26717 -2.75662 5.39693
|
||||
300001 45378 43599 18709 19609 13726 13328 36021 37297 9.20708 -5.96268 4.59857 -2.41901 4.71363
|
||||
301001 45241 43665 18801 19554 13708 13297 36084 37317 8.34791 -5.28424 3.84575 -2.50031 4.55225
|
||||
302001 45163 43685 18833 19565 13725 13299 36113 37284 7.9962 -4.95719 3.73644 -2.59068 4.32353
|
||||
303001 45170 43749 18855 19504 13742 13266 36068 37314 7.95205 -4.76276 3.3154 -2.89498 4.602
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||||
304001 45170 43800 18865 19456 13762 13315 36038 37262 7.61765 -4.59041 3.02075 -2.71504 4.52331
|
||||
305001 45042 43856 18943 19402 13771 13357 36079 37218 6.73308 -3.97514 2.34572 -2.51213 4.20944
|
||||
306001 44949 43885 19006 19371 13790 13367 36090 37210 6.31802 -3.56725 1.86491 -2.5654 4.13919
|
||||
307001 44955 43860 19004 19445 13792 13392 36084 37136 6.28958 -3.67165 2.25075 -2.42462 3.89014
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||||
308001 44844 43893 19054 19417 13813 13380 36124 37143 5.88933 -3.18987 1.85243 -2.62434 3.76699
|
||||
309001 44685 44004 19148 19327 13792 13375 36211 37127 4.88912 -2.2828 0.915141 -2.5278 3.386
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||||
310001 44589 44051 19241 19234 13749 13353 36257 37195 4.58598 -1.80313 -0.0331066 -2.40328 3.46455
|
||||
311001 44551 44093 19250 19198 13704 13356 36331 37186 4.10557 -1.53439 -0.262617 -2.11335 3.15692
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||||
312001 44527 44087 19280 19163 13707 13349 36322 37234 4.31108 -1.47418 -0.594153 -2.1743 3.36624
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||||
313001 44499 44109 19340 19123 13738 13389 36260 37212 4.44591 -1.30495 -1.10302 -2.11608 3.51693
|
||||
314001 44400 44171 19387 19089 13749 13429 36301 37144 4.04273 -0.764241 -1.51577 -1.93817 3.11537
|
||||
315001 44376 44230 19377 19036 13729 13482 36355 37085 3.57295 -0.485252 -1.73643 -1.49446 2.69851
|
||||
316001 44390 44215 19352 19027 13694 13545 36401 37046 3.09468 -0.58268 -1.65553 -0.899899 2.38474
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||||
317001 44418 44128 19327 19064 13656 13580 36436 37061 2.87721 -0.969347 -1.33883 -0.457615 2.31015
|
||||
318001 44381 44081 19345 19083 13604 13584 36507 37085 2.71256 -1.00343 -1.33309 -0.1184 2.13541
|
||||
319001 44381 44012 19373 19118 13564 13579 36518 37125 2.87074 -1.23853 -1.29803 0.0924926 2.23915
|
||||
320001 44280 44049 19410 19096 13518 13560 36628 37129 2.57543 -0.774645 -1.59844 0.256677 1.84713
|
||||
321001 44253 44042 19427 19091 13483 13541 36673 37160 2.60229 -0.707487 -1.71029 0.354262 1.79465
|
||||
322001 44280 43879 19425 19192 13455 13599 36676 37164 2.68727 -1.34795 -1.18395 0.876925 1.79825
|
||||
323001 44336 43643 19413 19323 13429 13671 36657 37198 3.43391 -2.33638 -0.457283 1.47005 1.99071
|
||||
324001 44291 43426 19454 19439 13412 13734 36678 37236 4.07035 -2.92061 -0.0760599 1.95435 2.05244
|
||||
325001 44226 43338 19504 19498 13402 13775 36704 37224 4.21702 -2.99958 -0.0295108 2.26333 1.91368
|
||||
326001 44157 43221 19569 19587 13356 13869 36754 37158 4.68075 -3.16516 0.0918357 3.10982 1.48722
|
||||
327001 44088 43037 19566 19724 13324 13939 36858 37135 5.31261 -3.55936 0.797978 3.7254 1.01953
|
||||
328001 44077 42921 19460 19805 13293 13973 37006 37136 5.96478 -3.91795 1.74194 4.11884 0.478636
|
||||
329001 44057 42855 19432 19822 13338 13895 37009 37263 5.72359 -4.07592 1.96932 3.37599 0.933216
|
||||
330001 44011 42824 19452 19822 13319 13894 37054 37295 5.71334 -4.02682 1.8679 3.48634 0.885057
|
||||
331001 43931 42763 19472 19876 13297 13953 37136 37243 5.98583 -3.96557 2.03754 3.97466 0.39354
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||||
332001 43733 42643 19536 20001 13313 14029 37254 37162 6.1715 -3.70748 2.33945 4.33083 -0.33605
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||||
333001 43683 42604 19566 20022 13313 14026 37274 37183 6.11976 -3.67194 2.29271 4.31292 -0.332292
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334001 43655 42632 19581 20030 13306 14018 37294 37155 6.00255 -3.4813 2.25687 4.30806 -0.508229
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||||
335001 43677 42592 19596 20030 13265 14021 37298 37192 6.28461 -3.69276 2.18109 4.57742 -0.387178
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||||
336001 43699 42611 19585 20012 13298 13983 37254 37229 5.96052 -3.70209 2.14671 4.14798 -0.0904005
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||||
337001 43724 42662 19564 19998 13334 13931 37214 37244 5.55887 -3.612 2.18285 3.61625 0.111146
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||||
338001 43712 42611 19566 19971 13332 13870 37226 37383 5.4002 -3.74606 2.0377 3.26271 0.575987
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||||
339001 43752 42564 19491 20029 13372 13800 37221 37442 5.57411 -4.04233 2.70716 2.59719 0.810002
|
||||
340001 43845 42466 19449 20068 13382 13763 37160 37538 6.24411 -4.69257 3.11473 2.31322 1.38425
|
||||
341001 43930 42387 19403 20126 13402 13758 37101 37564 6.95298 -5.25061 3.63735 2.16089 1.69563
|
||||
342001 43988 42313 19366 20193 13455 13700 37027 37629 7.54078 -5.70043 4.15886 1.48749 2.20446
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||||
343001 44000 42336 19367 20231 13527 13639 36942 37629 7.59697 -5.66184 4.34275 0.680251 2.51698
|
||||
344001 43993 42381 19396 20222 13536 13626 36911 37606 7.35435 -5.48366 4.15074 0.546813 2.5472
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||||
345001 44046 42443 19352 20168 13523 13650 36915 37574 7.27891 -5.44941 4.10558 0.77116 2.41578
|
||||
346001 44007 42436 19369 20103 13624 13609 36836 37687 7.20599 -5.34202 3.69534 -0.0901651 3.11855
|
||||
347001 43936 42430 19412 20015 13641 13637 36847 37753 6.81812 -5.12322 3.03771 -0.0234881 3.31831
|
||||
348001 43865 42379 19451 19953 13629 13707 36891 37794 6.5681 -5.05618 2.53152 0.47394 3.30782
|
||||
349001 43769 42415 19498 19853 13597 13792 36972 37773 5.86914 -4.60831 1.79219 1.18045 2.93342
|
||||
350001 43786 42402 19501 19765 13618 13864 36931 37802 6.0293 -4.71039 1.33489 1.4861 3.18972
|
||||
351001 43831 42363 19492 19692 13624 13929 36889 37849 6.45988 -4.99634 1.01296 1.83963 3.51515
|
||||
352001 43862 42323 19484 19617 13624 14003 36865 37891 6.87132 -5.24101 0.673473 2.28093 3.75374
|
||||
353001 43779 42233 19494 19604 13650 14059 36912 37938 6.94252 -5.27016 0.55718 2.45778 3.75139
|
||||
354001 43826 42127 19458 19603 13641 14073 36910 38031 7.59106 -5.79384 0.734535 2.59572 4.09614
|
||||
355001 43862 42062 19450 19562 13618 14137 36905 38073 8.11968 -6.13936 0.567919 3.11602 4.26677
|
||||
356001 43937 41894 19398 19573 13605 14191 36895 38176 9.1448 -6.97213 0.887349 3.51558 4.67655
|
||||
357001 44030 41675 19355 19585 13605 14191 36845 38383 10.4817 -8.043 1.16642 3.51558 5.60868
|
||||
358001 44039 41579 19361 19532 13637 14147 36798 38576 11.0786 -8.40593 0.867955 3.0604 6.47743
|
||||
359001 44113 41466 19296 19514 13667 14170 36759 38684 11.8872 -9.04708 1.10746 3.01553 7.00966
|
||||
360001 44046 41387 19357 19441 13642 14229 36790 38777 12.147 -9.09586 0.427328 3.51684 7.22945
|
||||
361001 44051 41292 19358 19414 13563 14262 36863 38866 12.6417 -9.44296 0.285271 4.19117 7.27985
|
||||
362001 44132 41204 19320 19371 13447 14312 36936 38947 13.4454 -10.0219 0.260149 5.19249 7.3015
|
||||
363001 44157 41057 19315 19342 13418 14353 36945 39082 14.2948 -10.6183 0.138196 5.61142 7.75156
|
||||
364001 44125 40916 19316 19344 13357 14396 37037 39178 14.8375 -11.0028 0.143277 6.23751 7.75648
|
||||
365001 44270 40743 19236 19321 13346 14467 36983 39302 16.1924 -12.094 0.434601 6.7232 8.39859
|
||||
366001 44289 40683 19227 19267 13281 14574 37038 39309 16.7524 -12.368 0.205595 7.7487 8.22147
|
||||
367001 44189 40649 19279 19209 13289 14615 37078 39360 16.7026 -12.1511 -0.35509 7.93945 8.25636
|
||||
368001 44065 40636 19323 19134 13285 14668 37161 39396 16.5354 -11.7821 -0.963772 8.27195 8.07765
|
||||
369001 44027 40575 19332 19111 13243 14750 37232 39398 16.8664 -11.8681 -1.12715 9.00717 7.82454
|
||||
370001 44097 40473 19321 19090 13246 14787 37170 39484 17.6423 -12.4618 -1.17865 9.20381 8.35788
|
||||
371001 44040 40496 19347 19002 13212 14806 37235 39530 17.6345 -12.1891 -1.76174 9.52291 8.28326
|
||||
372001 44131 40322 19314 18971 13133 14892 37256 39649 18.9666 -13.107 -1.75299 10.5073 8.6291
|
||||
373001 44128 40266 19324 18925 13111 14958 37271 39685 19.4462 -13.294 -2.04015 11.0244 8.70194
|
||||
374001 44088 40247 19330 18877 13139 15011 37278 39699 19.5177 -13.2251 -2.31667 11.1582 8.7272
|
||||
375001 44102 40149 19328 18842 13149 15038 37256 39805 20.0641 -13.6175 -2.4867 11.2522 9.18355
|
||||
376001 44168 40050 19267 18769 13208 15035 37192 39980 20.6588 -14.1888 -2.55261 10.8721 10.0373
|
||||
377001 44202 40007 19250 18678 13192 15119 37191 40030 21.2872 -14.4549 -2.93623 11.4533 10.2176
|
||||
378001 44198 39940 19276 18632 13142 15277 37219 39985 22.0435 -14.6782 -3.30679 12.6654 9.95602
|
||||
379001 44065 39926 19330 18505 13140 15322 37300 40081 22.1175 -14.2804 -4.24052 12.9344 9.99855
|
||||
380001 43970 39847 19385 18427 13125 15389 37355 40171 22.5639 -14.2399 -4.92578 13.4082 10.1149
|
||||
381001 43884 39785 19426 18328 13106 15392 37419 40329 22.9137 -14.1696 -5.65008 13.5423 10.4376
|
||||
382001 43861 39798 19450 18229 13085 15478 37440 40329 23.3388 -14.0447 -6.28852 14.1607 10.3621
|
||||
383001 43866 39782 19439 18179 13099 15574 37432 40299 23.6851 -14.1182 -6.4947 14.6178 10.2857
|
||||
384001 43751 39747 19485 18113 13122 15702 37478 40272 23.9459 -13.854 -7.07404 15.198 10.0226
|
||||
385001 43844 39639 19435 18098 13135 15794 37422 40303 24.7107 -14.551 -6.8995 15.6348 10.3363
|
||||
386001 43890 39552 19413 18091 13181 15871 37352 40320 25.1915 -15.015 -6.82471 15.7836 10.652
|
||||
387001 43936 39496 19423 18038 13256 15925 37221 40375 25.6867 -15.369 -7.15413 15.6257 11.3249
|
||||
388001 43930 39439 19411 17985 13304 16020 37191 40390 26.0724 -15.5514 -7.37237 15.862 11.4876
|
||||
389001 43892 39414 19458 17914 13277 16140 37209 40366 26.6761 -15.5123 -7.98513 16.694 11.3372
|
||||
390001 43889 39393 19471 17824 13280 16233 37196 40384 27.2383 -15.5769 -8.52672 17.1907 11.4482
|
||||
391001 43830 39415 19521 17750 13293 16342 37189 40330 27.5549 -15.3072 -9.17684 17.7085 11.2765
|
||||
392001 43836 39397 19501 17694 13267 16424 37229 40322 27.9923 -15.3915 -9.37287 18.3185 11.1018
|
||||
393001 43831 39352 19538 17612 13282 16487 37182 40386 28.6081 -15.5348 -9.99594 18.5727 11.4992
|
||||
394001 43818 39419 19536 17511 13318 16578 37161 40329 28.778 -15.2525 -10.5242 18.8513 11.3756
|
||||
395001 43851 39387 19512 17418 13321 16680 37149 40352 29.438 -15.4777 -10.8999 19.3898 11.5005
|
||||
396001 43878 39410 19497 17323 13318 16781 37140 40323 29.9545 -15.4869 -11.333 19.9577 11.4315
|
||||
397001 43882 39394 19520 17228 13299 16926 37132 40289 30.8026 -15.5573 -11.9597 20.8594 11.3412
|
||||
398001 43843 39486 19546 17132 13321 16971 37123 40247 30.8648 -15.0973 -12.6073 20.9692 11.2275
|
||||
399001 43811 39484 19557 17020 13295 17015 37170 40317 31.3866 -14.9964 -13.2678 21.365 11.3016
|
||||
400001 43745 39489 19583 16893 13277 17085 37228 40369 31.9491 -14.7558 -14.0872 21.8518 11.2721
|
||||
401001 43688 39529 19600 16775 13317 17095 37228 40437 32.0808 -14.4211 -14.8146 21.6617 11.5112
|
||||
402001 43521 39537 19689 16661 13320 17158 37303 40480 32.5024 -13.8276 -15.8844 21.982 11.3877
|
||||
403001 43429 39594 19727 16549 13328 17187 37349 40506 32.7352 -13.3134 -16.6882 22.0888 11.3107
|
||||
404001 43398 39661 19762 16403 13372 17239 37301 40533 33.2089 -12.9705 -17.6656 22.0999 11.5811
|
||||
405001 43414 39736 19768 16303 13344 17297 37307 40500 33.7128 -12.7588 -18.2467 22.5804 11.4433
|
||||
406001 43409 39832 19787 16173 13346 17355 37291 40476 34.2179 -12.4018 -19.0605 22.8779 11.4175
|
||||
407001 43337 39946 19783 16048 13317 17433 37396 40409 34.5691 -11.7541 -19.734 23.4698 10.7981
|
||||
408001 43343 40026 19775 15923 13320 17485 37395 40402 35.0283 -11.4918 -20.39 23.7281 10.7772
|
||||
409001 43353 40133 19754 15802 13301 17537 37425 40364 35.4452 -11.148 -20.961 24.1197 10.5339
|
||||
410001 43347 40149 19764 15711 13326 17629 37396 40347 35.9959 -11.0712 -21.5211 24.4548 10.5801
|
||||
411001 43439 40014 19743 15709 13311 17750 37340 40363 36.7639 -11.8598 -21.4272 25.1847 10.8411
|
||||
412001 43497 39949 19720 15654 13306 17832 37310 40401 37.4036 -12.2861 -21.621 25.6466 11.0845
|
||||
413001 43498 39939 19678 15590 13326 17902 37331 40405 37.6532 -12.3249 -21.7706 25.8926 11.0217
|
||||
414001 43620 39834 19588 15564 13328 17976 37297 40462 38.0967 -13.1094 -21.4651 26.268 11.3464
|
||||
415001 43657 39719 19560 15527 13303 18009 37313 40581 38.6517 -13.6419 -21.533 26.5925 11.7056
|
||||
416001 43688 39619 19556 15513 13287 18033 37302 40671 39.11 -14.1015 -21.5919 26.8151 12.0614
|
||||
417001 43775 39434 19495 15566 13254 18117 37309 40719 39.6185 -15.0527 -20.9856 27.4538 12.2039
|
||||
418001 43808 39317 19448 15595 13323 18052 37254 40872 39.3269 -15.5806 -20.585 26.6956 12.9404
|
||||
419001 43874 39260 19404 15514 13349 18100 37206 40962 39.8453 -16.0063 -20.8198 26.7882 13.4305
|
||||
420001 43887 39225 19386 15420 13374 18135 37186 41056 40.3016 -16.1749 -21.2606 26.819 13.8317
|
||||
421001 43852 39229 19458 15269 13396 18165 37127 41173 41.1368 -16.0426 -22.4814 26.842 14.4555
|
||||
422001 43908 39143 19409 15194 13378 18210 37138 41289 41.7812 -16.5383 -22.6614 27.1849 14.8188
|
||||
423001 44018 39080 19305 15174 13375 18237 37135 41345 41.9763 -17.1337 -22.2498 27.3434 15.0244
|
||||
424001 44080 39020 19226 15132 13361 18286 37166 41398 42.3124 -17.5567 -22.0893 27.6824 15.0948
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||||
425001 44081 38888 19190 15121 13345 18342 37217 41485 42.744 -18.0323 -21.9694 28.0694 15.2099
|
||||
426001 44100 38738 19151 15129 13347 18339 37235 41630 43.0158 -18.6337 -21.7255 28.0417 15.6464
|
||||
427001 44126 38579 19119 15132 13396 18322 37192 41799 43.2421 -19.287 -21.5424 27.6601 16.3931
|
||||
428001 44177 38474 19071 15096 13441 18335 37144 41927 43.578 -19.8359 -21.5039 27.4553 17.0107
|
||||
429001 44224 38412 19029 15079 13488 18355 37092 41986 43.7377 -20.2169 -21.3871 27.2751 17.4047
|
||||
430001 44196 38380 19023 15015 13552 18410 37062 42027 43.9505 -20.2381 -21.7235 27.174 17.656
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||||
431001 44108 38414 19069 14926 13585 18465 37071 42027 44.1742 -19.8201 -22.4694 27.2595 17.623
|
||||
432001 44071 38426 19085 14850 13595 18546 37082 42010 44.5476 -19.6525 -22.9887 27.6169 17.5241
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||||
433001 44023 38426 19109 14763 13574 18614 37128 42029 45.0575 -19.4898 -23.6124 28.0936 17.4221
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||||
434001 44044 38410 19086 14752 13550 18700 37154 41969 45.3375 -19.6168 -23.5582 28.6799 17.1214
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||||
435001 44015 38301 19103 14745 13535 18734 37181 42051 45.768 -19.9121 -23.6852 28.9443 17.305
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||||
436001 43841 38331 19219 14645 13608 18715 37166 42140 45.8927 -19.2178 -24.8533 28.4084 17.6662
|
||||
437001 43606 38337 19337 14567 13682 18704 37210 42223 45.8804 -18.4015 -25.9023 27.9092 17.7917
|
||||
438001 43416 38368 19449 14476 13737 18710 37233 42277 46.0732 -17.6466 -26.9964 27.6109 17.8931
|
||||
439001 43331 38422 19508 14319 13803 18708 37193 42381 46.5728 -17.1626 -28.2091 27.2074 18.3976
|
||||
440001 43211 38470 19605 14160 13871 18710 37148 42490 47.2259 -16.5823 -29.6282 26.8125 18.9359
|
||||
441001 43000 38601 19749 13988 13959 18714 37127 42527 47.7388 -15.3932 -31.3609 26.31 19.1395
|
||||
442001 42917 38591 19809 13899 13962 18806 37147 42534 48.4362 -15.1463 -32.186 26.7635 19.0902
|
||||
443001 42848 38535 19816 13836 13896 18872 37275 42587 48.9917 -15.1124 -32.5943 27.4928 18.8032
|
||||
444001 42812 38405 19826 13761 13905 18924 37292 42740 49.7243 -15.4577 -33.0897 27.7045 19.264
|
||||
445001 42735 38367 19897 13684 13969 18895 37234 42884 50.2151 -15.3317 -33.9003 27.1768 19.9673
|
||||
446001 42638 38392 20012 13525 14033 18860 37152 43053 51.1837 -14.9099 -35.4187 26.6189 20.8427
|
||||
447001 42628 38309 20017 13471 14026 18906 37164 43144 51.7539 -15.1751 -35.767 26.8952 21.1081
|
||||
448001 42636 38220 20018 13417 14020 18907 37161 43286 52.3074 -15.5238 -36.0961 26.9358 21.6011
|
||||
449001 42589 38182 20022 13365 14027 18959 37197 43324 52.6443 -15.5003 -36.4286 27.1595 21.5982
|
||||
450001 42614 38073 20004 13338 13977 19031 37240 43388 53.2064 -15.9801 -36.5024 27.822 21.6579
|
||||
451001 42672 37878 19993 13319 13910 19073 37260 43560 54.053 -16.8852 -36.5627 28.4327 22.1668
|
||||
452001 42612 37773 19974 13287 13856 19092 37393 43677 54.3588 -17.06 -36.6612 28.8507 22.0777
|
||||
453001 42541 37754 20044 13159 13793 19154 37457 43762 55.4513 -16.886 -37.7798 29.5398 22.1311
|
||||
454001 42450 37722 20081 13069 13772 19224 37532 43814 56.1071 -16.6906 -38.5076 30.0189 22.0332
|
||||
455001 42394 37738 20135 12966 13746 19246 37560 43879 56.8365 -16.4404 -39.399 30.285 22.1503
|
||||
456001 42319 37786 20197 12857 13692 19327 37627 43859 57.6604 -16.0086 -40.3676 31.0155 21.8391
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||||
457001 42349 37687 20238 12789 13632 19429 37616 43924 58.7884 -16.4715 -40.9838 31.8868 22.0981
|
||||
458001 42376 37551 20211 12767 13635 19496 37613 44015 59.2496 -17.0593 -40.9867 32.2047 22.4152
|
||||
459001 42434 37368 20162 12813 13654 19498 37585 44150 59.3036 -17.9258 -40.4655 32.1011 22.9706
|
||||
460001 42432 37280 20099 12868 13612 19448 37692 44233 58.9194 -18.2405 -39.8205 32.1017 22.8602
|
||||
461001 42438 37267 20000 12889 13638 19479 37759 44194 58.3819 -18.3086 -39.206 32.1016 22.486
|
||||
462001 42360 37283 19942 12921 13719 19439 37812 44188 57.4992 -17.9876 -38.7282 31.414 22.2685
|
||||
463001 42407 37241 19831 13010 13814 19358 37781 44222 56.4292 -18.3024 -37.6376 30.4411 22.495
|
||||
464001 42391 37239 19754 12994 13859 19340 37829 44258 56.0104 -18.2549 -37.3539 30.0829 22.4416
|
||||
465001 42353 37233 19684 12976 13954 19325 37842 44297 55.509 -18.1465 -37.1164 29.4438 22.5253
|
||||
466001 42303 37258 19607 12986 14022 19363 37902 44224 54.8273 -17.8822 -36.6719 29.2336 22.0642
|
||||
467001 42215 37308 19602 12943 14059 19429 37958 44151 54.7128 -17.3971 -36.9096 29.3471 21.6163
|
||||
468001 42108 37378 19591 12935 14081 19486 38054 44032 54.3066 -16.7734 -36.9037 29.5036 20.8689
|
||||
469001 42041 37424 19562 12900 14155 19468 38076 44039 53.9261 -16.3747 -36.9734 28.9773 20.8129
|
||||
470001 41863 37508 19575 12859 14189 19519 38207 43945 53.6021 -15.4544 -37.2892 29.0333 20.0232
|
||||
471001 41642 37570 19577 12860 14195 19518 38420 43883 52.9466 -14.4644 -37.293 28.993 19.0462
|
||||
472001 41569 37576 19521 12854 14140 19567 38604 43834 52.7254 -14.1897 -37.0508 29.5621 18.2191
|
||||
473001 41432 37590 19500 12861 14196 19545 38706 43834 52.1094 -13.6624 -36.9024 29.1234 17.8541
|
||||
474001 41364 37601 19435 12829 14229 19551 38806 43849 51.7499 -13.3862 -36.7741 28.9597 17.5461
|
||||
475001 41286 37635 19399 12825 14272 19592 38877 43778 51.3462 -12.9912 -36.6187 28.9129 17.0521
|
||||
476001 41211 37599 19355 12858 14320 19643 38948 43730 50.8603 -12.8615 -36.1959 28.887 16.6359
|
||||
477001 41044 37693 19345 12823 14360 19653 39085 43661 50.4151 -11.9373 -36.3606 28.7031 15.9129
|
||||
478001 40880 37773 19339 12789 14401 19702 39214 43566 50.1087 -11.0736 -36.5395 28.7085 15.1311
|
||||
479001 40728 37773 19309 12798 14488 19705 39308 43555 49.4496 -10.5443 -36.3353 28.2148 14.7563
|
||||
480001 40673 37766 19256 12805 14573 19742 39331 43518 48.9486 -10.3771 -36.0263 27.9055 14.5491
|
||||
481001 40658 37759 19201 12829 14630 19781 39344 43462 48.4836 -10.35 -35.6023 27.7695 14.313
|
||||
482001 40637 37835 19123 12815 14666 19797 39408 43384 47.9666 -9.99887 -35.2947 27.6416 13.822
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||||
483001 40569 37819 19105 12771 14758 19784 39402 43457 47.8 -9.8185 -35.4746 27.0451 14.0909
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||||
484001 40480 37794 19078 12804 14794 19795 39482 43438 47.314 -9.59689 -35.1352 26.8923 13.7419
|
||||
485001 40466 37754 18998 12834 14820 19810 39550 43433 46.78 -9.69318 -34.5463 26.8172 13.4833
|
||||
486001 40317 37731 18965 12860 14900 19762 39652 43478 45.9879 -9.25284 -34.2193 26.1173 13.2736
|
||||
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|
||||
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|
||||
489001 40152 37486 18824 12908 15035 19721 39823 43716 44.8075 -9.56438 -33.2085 25.1379 13.4729
|
||||
490001 40041 37531 18759 12937 15048 19702 39986 43661 43.9929 -9.00834 -32.6993 24.9684 12.7105
|
||||
491001 40006 37483 18667 12958 15146 19649 40015 43741 43.1423 -9.05987 -32.1006 24.1428 12.8784
|
||||
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|
||||
493001 39904 37401 18499 13050 15334 19557 40097 43823 41.2156 -8.99871 -30.6754 22.6106 12.8659
|
||||
494001 39835 37425 18417 13052 15388 19594 40194 43760 40.5832 -8.66676 -30.2409 22.4903 12.3111
|
||||
495001 39792 37457 18305 13077 15394 19642 40343 43654 39.8383 -8.39631 -29.5087 22.6981 11.4293
|
||||
496001 39793 37381 18224 13065 15501 19577 40316 43807 39.3002 -8.67757 -29.1624 21.7662 12.0414
|
||||
497001 39780 37407 18160 13034 15602 19515 40292 43874 38.7783 -8.53646 -29.02 20.8843 12.352
|
||||
498001 39729 37364 18107 13016 15720 19416 40278 44034 38.2287 -8.51285 -28.8546 19.721 12.9405
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||||
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828001 36585 39545 13480 14448 19473 17172 44296 42672 17.9847 10.7242 5.79016 -12.0227 -5.51077
|
||||
829001 36616 39621 13437 14535 19489 17153 44292 42528 18.6095 10.8797 6.56289 -12.206 -5.99059
|
||||
830001 36580 39631 13433 14576 19462 17074 44359 42556 19.0334 11.0482 6.82744 -12.4957 -6.11961
|
||||
831001 36596 39654 13433 14675 19425 17057 44380 42451 19.3411 11.0707 7.40589 -12.4002 -6.55016
|
||||
832001 36613 39663 13404 14754 19385 17044 44432 42376 19.6422 11.0398 8.04292 -12.2678 -6.98207
|
||||
833001 36684 39685 13380 14838 19361 16975 44409 42339 19.9833 10.8558 8.67728 -12.5196 -7.03201
|
||||
834001 36705 39735 13361 14909 19299 16943 44469 42250 20.3669 10.9557 9.20458 -12.3782 -7.53916
|
||||
835001 36705 39779 13344 14963 19248 16873 44536 42223 20.8319 11.1092 9.61907 -12.5005 -7.85916
|
||||
836001 36701 39836 13329 15010 19266 16788 44537 42204 21.4753 11.3258 9.98193 -13.0546 -7.92788
|
||||
837001 36697 39910 13277 15076 19239 16700 44620 42152 22.3265 11.6024 10.6802 -13.3972 -8.38476
|
||||
838001 36728 40008 13250 15095 19297 16622 44558 42113 22.9887 11.8345 10.955 -14.1185 -8.31151
|
||||
839001 36747 40027 13223 15183 19276 16559 44587 42069 23.5486 11.8316 11.6255 -14.3569 -8.56021
|
||||
840001 36760 40057 13223 15247 19232 16488 44618 42046 23.9275 11.8896 11.9918 -14.5229 -8.74326
|
||||
841001 36818 40030 13222 15308 19187 16419 44606 42081 23.9896 11.5806 12.3462 -14.6733 -8.58245
|
||||
842001 36802 40055 13226 15348 19179 16328 44626 42107 24.4407 11.7278 12.5496 -15.1342 -8.55982
|
||||
843001 36856 40109 13202 15439 19151 16265 44624 42025 25.0069 11.7196 13.2145 -15.3396 -8.83573
|
||||
844001 36885 40098 13195 15514 19166 16187 44587 42039 25.4438 11.574 13.6828 -15.8479 -8.66362
|
||||
845001 36986 40064 13166 15541 19233 16085 44448 42148 25.7124 11.0826 14.0137 -16.755 -7.82237
|
||||
846001 37007 40067 13196 15562 19220 15993 44410 42216 25.8349 11.0161 13.9482 -17.2009 -7.46086
|
||||
847001 36977 40170 13224 15578 19275 15875 44357 42215 26.5786 11.4897 13.8669 -18.1391 -7.28645
|
||||
848001 37014 40164 13237 15684 19260 15810 44322 42180 26.9822 11.3326 14.3852 -18.4267 -7.2894
|
||||
849001 37032 40134 13216 15820 19264 15744 44321 42140 27.6979 11.1607 15.278 -18.8171 -7.42375
|
||||
850001 37030 40117 13235 15908 19272 15682 44296 42131 28.1361 11.1081 15.6541 -19.2061 -7.37079
|
||||
851001 36986 40139 13252 15992 19292 15543 44303 42164 29.0174 11.3473 16.0188 -20.0908 -7.28067
|
||||
852001 37010 40179 13232 16087 19261 15464 44330 42108 29.6718 11.4002 16.6699 -20.3801 -7.56419
|
||||
853001 36984 40203 13260 16163 19207 15433 44382 42039 29.9226 11.5803 16.9203 -20.2815 -7.97653
|
||||
854001 36946 40243 13277 16233 19171 15399 44439 41963 30.3225 11.8609 17.2038 -20.2913 -8.42989
|
||||
855001 36921 40367 13284 16269 19136 15329 44492 41873 30.9045 12.3893 17.36 -20.5107 -8.91828
|
||||
856001 36944 40379 13310 16321 19191 15263 44388 41875 31.2984 12.3469 17.4881 -21.1658 -8.56263
|
||||
857001 36897 40471 13337 16387 19192 15216 44407 41764 31.9151 12.843 17.687 -21.4387 -9.01005
|
||||
858001 36849 40531 13350 16482 19192 15150 44442 41675 32.6905 13.2303 18.1297 -21.8155 -9.43543
|
||||
859001 36898 40561 13354 16555 19199 15094 44382 41628 33.0964 13.1553 18.5053 -22.1712 -9.39695
|
||||
860001 36844 40647 13378 16620 19179 15044 44432 41526 33.6878 13.6567 18.7153 -22.3553 -9.91694
|
||||
861001 36782 40816 13374 16640 19155 15045 44522 41336 34.3111 14.4765 18.8488 -22.2276 -10.8783
|
||||
862001 36723 40938 13394 16680 19110 15082 44606 41137 34.6796 15.1201 18.9453 -21.7867 -11.852
|
||||
863001 36695 40986 13420 16719 19060 15068 44658 41064 34.8679 15.3909 18.9998 -21.6123 -12.2804
|
||||
864001 36665 41055 13400 16769 19032 14967 44736 41046 35.6222 15.7421 19.3933 -22.0491 -12.6039
|
||||
865001 36638 41193 13373 16807 18985 14904 44837 40933 36.4205 16.3223 19.7639 -22.1718 -13.3355
|
||||
866001 36621 41250 13382 16852 19017 14814 44813 40921 37.0441 16.5833 19.9533 -22.8541 -13.2973
|
||||
867001 36687 41267 13351 16904 18949 14742 44846 40924 37.2962 16.399 20.4236 -22.9233 -13.397
|
||||
868001 36693 41337 13362 16931 18944 14761 44834 40808 37.487 16.6201 20.5027 -22.7878 -13.7623
|
||||
869001 36655 41559 13391 16918 18960 14709 44827 40651 38.1923 17.5302 20.256 -23.1705 -14.2886
|
||||
870001 36590 41740 13367 16942 18876 14734 45000 40421 38.9382 18.3962 20.5317 -22.5963 -15.6722
|
||||
871001 36585 41968 13392 16942 18830 14716 45026 40211 39.5078 19.2013 20.3797 -22.465 -16.4975
|
||||
872001 36531 42204 13427 16922 18809 14683 45066 40028 40.222 20.2126 20.059 -22.5487 -17.2758
|
||||
873001 36477 42391 13445 16879 18754 14644 45158 39923 40.746 21.055 19.7177 -22.492 -17.9512
|
||||
874001 36414 42603 13474 16873 18739 14622 45207 39739 41.5392 22.0134 19.5093 -22.5428 -18.7649
|
||||
875001 36270 42774 13522 16873 18736 14570 45306 39620 42.5017 23.1301 19.2186 -22.8299 -19.5151
|
||||
876001 36298 42787 13538 16934 18763 14536 45236 39580 42.716 23.0719 19.4528 -23.1658 -19.4235
|
||||
877001 36326 42891 13539 16953 18780 14457 45190 39536 43.196 23.3227 19.5495 -23.7139 -19.4269
|
||||
878001 36410 42932 13513 16980 18750 14419 45162 39506 43.2857 23.1517 19.8527 -23.7822 -19.4405
|
||||
879001 36491 42940 13492 17035 18718 14429 45134 39433 43.2908 22.8797 20.2767 -23.5593 -19.6068
|
||||
880001 36486 43037 13498 17089 18711 14361 45140 39350 43.934 23.2282 20.5312 -23.9215 -19.9219
|
||||
881001 36493 43088 13456 17181 18696 14310 45190 39257 44.7114 23.3769 21.2808 -24.1427 -20.4178
|
||||
882001 36493 43190 13429 17244 18682 14302 45231 39100 45.4391 23.7233 21.7822 -24.1178 -21.1137
|
||||
883001 36473 43283 13428 17259 18649 14261 45285 39033 45.9171 24.1125 21.8685 -24.189 -21.532
|
||||
884001 36445 43430 13459 17254 18664 14230 45267 38922 46.4289 24.7138 21.6539 -24.4485 -21.869
|
||||
885001 36433 43559 13434 17322 18657 14221 45311 38734 47.3235 25.1942 22.169 -24.4654 -22.688
|
||||
886001 36424 43694 13459 17331 18690 14179 45262 38631 47.8522 25.6844 22.0663 -24.8817 -22.8937
|
||||
887001 36454 43751 13396 17385 18619 14178 45366 38521 48.3809 25.7658 22.7365 -24.5224 -23.6334
|
||||
888001 36420 43833 13368 17465 18625 14177 45422 38360 49.2702 26.1676 23.3323 -24.5592 -24.3979
|
||||
889001 36430 43830 13386 17566 18602 14154 45417 38285 49.5831 26.1205 23.7592 -24.5765 -24.6515
|
||||
890001 36483 43847 13405 17641 18636 14060 45310 38288 49.8328 25.9797 24.0395 -25.3085 -24.2889
|
||||
891001 36604 43805 13366 17731 18650 13971 45214 38329 49.9613 25.3921 24.7513 -25.9078 -23.8229
|
||||
892001 36580 43843 13390 17782 18672 13882 45192 38329 50.4329 25.6085 24.8744 -26.5497 -23.7499
|
||||
893001 36585 43848 13395 17832 18696 13788 45158 38368 50.7918 25.6069 25.1072 -27.233 -23.4966
|
||||
894001 36640 43862 13386 17854 18656 13701 45152 38419 50.874 25.4514 25.2773 -27.5476 -23.2931
|
||||
895001 36631 43887 13394 17925 18654 13642 45155 38382 51.3454 25.5687 25.6014 -27.8908 -23.4363
|
||||
896001 36647 43958 13406 17947 18642 13632 45140 38299 51.5695 25.7499 25.6448 -27.8884 -23.6842
|
||||
897001 36678 44034 13383 17989 18664 13656 45110 38157 51.9928 25.8912 26.004 -27.8574 -24.0968
|
||||
898001 36627 44188 13420 17998 18587 13626 45201 38024 52.5111 26.5958 25.827 -27.6418 -24.8793
|
||||
899001 36559 44298 13420 18077 18550 13578 45306 37883 53.4891 27.2149 26.2397 -27.7397 -25.7376
|
||||
900001 36551 44333 13404 18203 18510 13540 45370 37760 54.2652 27.3615 26.9927 -27.7623 -26.3953
|
||||
901001 36552 44302 13423 18294 18542 13457 45318 37783 54.6096 27.254 27.3501 -28.4272 -26.1397
|
||||
902001 36454 44375 13436 18320 18560 13319 45385 37822 55.4657 27.8597 27.4063 -29.3544 -26.2202
|
||||
903001 36354 44481 13430 18368 18596 13215 45455 37772 56.5984 28.5832 27.691 -30.1707 -26.633
|
||||
904001 36361 44481 13434 18448 18584 13191 45456 37716 56.9188 28.5574 28.0801 -30.2551 -26.8394
|
||||
905001 36283 44559 13494 18480 18541 13206 45517 37591 57.2467 29.106 27.8831 -29.9429 -27.4949
|
||||
906001 36286 44632 13483 18514 18512 13198 45554 37492 57.6631 29.3385 28.1247 -29.8425 -27.9771
|
||||
907001 36280 44652 13465 18586 18452 13196 45638 37402 58.0863 29.4273 28.6037 -29.5457 -28.582
|
||||
908001 36335 44596 13458 18663 18442 13181 45600 37396 58.0765 29.0373 29.0412 -29.5855 -28.4784
|
||||
909001 36476 44490 13410 18761 18463 13128 45486 37457 57.9779 28.163 29.8326 -30.0168 -27.8799
|
||||
910001 36580 44431 13351 18869 18471 13072 45433 37464 58.2757 27.5825 30.7403 -30.4 -27.6792
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# include : borbu1.lst
|
||||
# selector : count
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 1
|
||||
# alphabet : ACGT
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 284128
|
||||
# valid : 284117
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftA RightA LeftC
|
||||
1 10620 11521 5303 8176
|
||||
1001 10649 11516 5252 8212
|
||||
2001 10687 11570 5253 8172
|
||||
3001 10714 11567 5286 8173
|
||||
4001 10772 11466 5269 8151
|
||||
5001 10793 11397 5270 8210
|
||||
6001 10792 11385 5292 8237
|
||||
7001 10795 11327 5319 8235
|
||||
8001 10824 11333 5349 8244
|
||||
9001 10903 11285 5292 8291
|
||||
10001 11016 11179 5241 8375
|
||||
11001 11095 11098 5211 8447
|
||||
12001 11171 11042 5179 8484
|
||||
13001 11283 10941 5148 8540
|
||||
14001 11361 10853 5112 8618
|
||||
15001 11430 10812 5058 8659
|
||||
16001 11456 10799 5070 8687
|
||||
17001 11555 10741 5077 8726
|
||||
18001 11604 10757 5096 8698
|
||||
19001 11649 10798 5118 8653
|
||||
20001 11666 10808 5121 8654
|
||||
21001 11639 10889 5120 8642
|
||||
22001 11593 10982 5195 8571
|
||||
23001 11569 10959 5246 8597
|
||||
24001 11579 10902 5255 8635
|
||||
25001 11506 10911 5343 8559
|
||||
26001 11461 10893 5404 8578
|
||||
27001 11490 10863 5397 8625
|
||||
28001 11488 10821 5415 8666
|
||||
29001 11453 10788 5481 8683
|
||||
30001 11477 10759 5492 8695
|
||||
31001 11510 10719 5487 8735
|
||||
32001 11492 10698 5530 8765
|
||||
33001 11457 10718 5589 8771
|
||||
34001 11429 10707 5639 8756
|
||||
35001 11406 10702 5669 8769
|
||||
36001 11370 10680 5741 8781
|
||||
37001 11332 10673 5790 8794
|
||||
38001 11298 10699 5857 8755
|
||||
39001 11258 10744 5911 8714
|
||||
40001 11235 10734 5947 8734
|
||||
41001 11258 10667 5962 8780
|
||||
42001 11242 10639 6011 8805
|
||||
43001 11211 10652 6076 8791
|
||||
44001 11163 10724 6132 8737
|
||||
45001 11128 10771 6169 8698
|
||||
46001 11114 10784 6199 8675
|
||||
47001 11045 10866 6218 8662
|
||||
48001 11019 10888 6211 8706
|
||||
49001 11005 10850 6224 8732
|
||||
50001 11009 10839 6240 8748
|
||||
51001 10957 10858 6308 8741
|
||||
52001 10918 10896 6412 8689
|
||||
53001 10866 10942 6485 8665
|
||||
54001 10806 10974 6557 8625
|
||||
55001 10784 10961 6625 8625
|
||||
56001 10742 10986 6692 8574
|
||||
57001 10682 11053 6747 8533
|
||||
58001 10681 11003 6762 8558
|
||||
59001 10626 11033 6809 8553
|
||||
60001 10577 11045 6867 8559
|
||||
61001 10546 11076 6927 8549
|
||||
62001 10511 11089 6998 8547
|
||||
63001 10530 11118 7023 8524
|
||||
64001 10572 11082 7027 8571
|
||||
65001 10589 11011 7030 8651
|
||||
66001 10583 10963 7032 8694
|
||||
67001 10612 10867 7047 8742
|
||||
68001 10646 10773 7049 8817
|
||||
69001 10675 10690 7056 8890
|
||||
70001 10688 10671 7066 8894
|
||||
71001 10688 10683 7061 8896
|
||||
72001 10781 10653 7044 8896
|
||||
73001 10875 10638 7006 8914
|
||||
74001 10971 10601 6982 8948
|
||||
75001 11073 10505 6936 8986
|
||||
76001 11192 10393 6871 9045
|
||||
77001 11308 10352 6825 9051
|
||||
78001 11400 10349 6780 9063
|
||||
79001 11389 10351 6824 9073
|
||||
80001 11384 10297 6843 9078
|
||||
81001 11375 10327 6845 9101
|
||||
82001 11391 10334 6841 9114
|
||||
83001 11405 10330 6867 9124
|
||||
84001 11374 10440 6929 9064
|
||||
85001 11386 10548 6956 8986
|
||||
86001 11376 10667 6964 8937
|
||||
87001 11407 10638 6951 8956
|
||||
88001 11442 10623 6968 8960
|
||||
89001 11482 10595 6964 8944
|
||||
90001 11498 10676 6963 8905
|
||||
91001 11501 10759 6990 8825
|
||||
92001 11485 10849 7054 8754
|
||||
93001 11445 10863 7109 8669
|
||||
94001 11388 10924 7181 8612
|
||||
95001 11338 10988 7212 8595
|
||||
96001 11285 11077 7263 8538
|
||||
97001 11251 11137 7296 8500
|
||||
98001 11244 11186 7351 8451
|
||||
99001 11205 11251 7386 8421
|
||||
100001 11257 11254 7409 8455
|
||||
101001 11338 11250 7407 8461
|
||||
102001 11323 11340 7427 8408
|
||||
103001 11315 11427 7502 8342
|
||||
104001 11270 11515 7581 8268
|
||||
105001 11256 11553 7629 8236
|
||||
106001 11240 11534 7688 8235
|
||||
107001 11260 11607 7763 8176
|
||||
108001 11276 11636 7782 8092
|
||||
109001 11344 11627 7812 8075
|
||||
110001 11433 11652 7863 8068
|
||||
111001 11502 11668 7957 8076
|
||||
112001 11491 11670 8017 8094
|
||||
113001 11447 11688 8087 8110
|
||||
114001 11537 11654 8190 8095
|
||||
115001 11524 11656 8204 8109
|
||||
116001 11576 11651 8171 8103
|
||||
117001 11547 11678 8161 8101
|
||||
118001 11453 11722 8162 8152
|
||||
119001 11381 11789 8219 8106
|
||||
120001 11382 11872 8244 8027
|
||||
121001 11331 11961 8234 7994
|
||||
122001 11321 11970 8241 7961
|
||||
123001 11270 11951 8311 7951
|
||||
124001 11162 11971 8387 7933
|
||||
125001 11090 11997 8449 7897
|
||||
126001 11024 12007 8493 7906
|
||||
127001 10929 12012 8551 7902
|
||||
128001 10840 12026 8627 7892
|
||||
129001 10815 12026 8656 7858
|
||||
130001 10792 12084 8693 7788
|
||||
131001 10742 12102 8727 7791
|
||||
132001 10775 12037 8685 7801
|
||||
133001 10799 12033 8653 7781
|
||||
134001 10816 12080 8656 7733
|
||||
135001 10892 12041 8633 7744
|
||||
136001 10985 12043 8571 7738
|
||||
137001 10945 12069 8606 7700
|
||||
138001 10913 12047 8617 7739
|
||||
139001 10914 12097 8551 7732
|
||||
140001 10883 12162 8589 7661
|
||||
141001 10851 12188 8636 7621
|
||||
142001 10822 12251 8657 7560
|
||||
143001 10796 12283 8677 7487
|
||||
144001 10752 12316 8705 7451
|
||||
145001 10713 12344 8744 7424
|
||||
146001 10698 12425 8770 7355
|
||||
147001 10716 12492 8782 7299
|
||||
148001 10703 12528 8763 7292
|
||||
149001 10695 12534 8771 7294
|
||||
150001 10681 12518 8790 7270
|
||||
151001 10672 12571 8784 7233
|
||||
152001 10702 12609 8754 7208
|
||||
153001 10753 12628 8709 7216
|
||||
154001 10721 12654 8741 7210
|
||||
155001 10660 12654 8780 7210
|
||||
156001 10644 12711 8806 7170
|
||||
157001 10655 12704 8784 7172
|
||||
158001 10742 12631 8730 7228
|
||||
159001 10773 12619 8690 7272
|
||||
160001 10795 12554 8662 7342
|
||||
161001 10887 12548 8662 7338
|
||||
162001 10879 12540 8713 7342
|
||||
163001 10862 12546 8722 7315
|
||||
164001 10849 12547 8763 7301
|
||||
165001 10866 12521 8733 7332
|
||||
166001 10910 12468 8677 7341
|
||||
167001 10949 12440 8658 7383
|
||||
168001 10968 12439 8620 7417
|
||||
169001 10965 12403 8622 7425
|
||||
170001 11003 12347 8564 7484
|
||||
171001 11047 12286 8534 7537
|
||||
172001 11008 12275 8561 7572
|
||||
173001 11035 12267 8557 7587
|
||||
174001 11049 12301 8563 7560
|
||||
175001 11086 12284 8542 7544
|
||||
176001 11102 12269 8543 7530
|
||||
177001 11130 12217 8533 7560
|
||||
178001 11069 12197 8585 7561
|
||||
179001 11005 12204 8651 7555
|
||||
180001 10944 12192 8697 7592
|
||||
181001 10851 12193 8755 7609
|
||||
182001 10757 12191 8830 7599
|
||||
183001 10684 12196 8888 7595
|
||||
184001 10677 12148 8895 7626
|
||||
185001 10679 12085 8899 7704
|
||||
186001 10649 11987 8900 7800
|
||||
187001 10642 11904 8916 7873
|
||||
188001 10585 11862 8967 7907
|
||||
189001 10498 11850 8997 7948
|
||||
190001 10382 11854 9041 7957
|
||||
191001 10354 11759 9057 8030
|
||||
192001 10353 11698 9061 8090
|
||||
193001 10355 11697 9069 8086
|
||||
194001 10299 11705 9075 8146
|
||||
195001 10331 11608 9098 8217
|
||||
196001 10324 11513 9113 8287
|
||||
197001 10336 11469 9115 8299
|
||||
198001 10462 11404 9059 8335
|
||||
199001 10563 11329 8974 8395
|
||||
200001 10667 11239 8927 8449
|
||||
201001 10643 11241 8943 8433
|
||||
202001 10615 11258 8971 8417
|
||||
203001 10601 11296 8934 8430
|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
633001 10694 10902 5378 5388
|
||||
634001 10697 10875 5376 5386
|
||||
635001 10674 10885 5384 5386
|
||||
636001 10657 10902 5394 5397
|
||||
637001 10571 10963 5387 5423
|
||||
638001 10590 10899 5377 5408
|
||||
639001 10594 10919 5369 5396
|
||||
640001 10608 10909 5377 5405
|
||||
641001 10621 10902 5384 5399
|
||||
642001 10695 10882 5364 5402
|
||||
643001 10710 10939 5324 5379
|
||||
644001 10724 10967 5249 5353
|
||||
645001 10766 11006 5187 5343
|
||||
646001 10801 11041 5182 5328
|
||||
647001 10849 11064 5203 5313
|
||||
648001 10852 11131 5251 5278
|
||||
649001 10829 11141 5266 5277
|
||||
650001 10819 11197 5313 5231
|
||||
651001 10756 11268 5360 5187
|
||||
652001 10680 11332 5421 5135
|
||||
653001 10661 11386 5441 5092
|
||||
654001 10664 11355 5443 5137
|
||||
655001 10760 11277 5420 5200
|
||||
656001 10817 11197 5417 5234
|
||||
657001 10820 11148 5416 5292
|
||||
658001 10767 11130 5479 5290
|
||||
659001 10707 11117 5518 5315
|
||||
660001 10697 11067 5548 5356
|
||||
661001 10623 11098 5623 5290
|
||||
662001 10654 11090 5651 5271
|
||||
663001 10671 11060 5608 5301
|
||||
664001 10653 11118 5569 5276
|
||||
665001 10656 11179 5520 5254
|
||||
666001 10681 11222 5526 5226
|
||||
667001 10649 11275 5572 5197
|
||||
668001 10617 11323 5621 5157
|
||||
669001 10536 11348 5642 5169
|
||||
670001 10487 11345 5683 5154
|
||||
671001 10477 11383 5717 5121
|
||||
672001 10489 11424 5688 5096
|
||||
673001 10496 11481 5703 5029
|
||||
674001 10524 11509 5652 5024
|
||||
675001 10537 11551 5599 5044
|
||||
676001 10597 11541 5564 5034
|
||||
677001 10580 11527 5559 5056
|
||||
678001 10557 11513 5566 5079
|
||||
679001 10579 11535 5564 5038
|
||||
680001 10620 11560 5586 5002
|
||||
681001 10566 11565 5651 5004
|
||||
682001 10496 11587 5695 5016
|
||||
683001 10424 11597 5718 5030
|
||||
684001 10425 11567 5725 5082
|
||||
685001 10415 11512 5732 5132
|
||||
686001 10386 11516 5767 5110
|
||||
687001 10380 11511 5735 5106
|
||||
688001 10363 11556 5728 5073
|
||||
689001 10343 11543 5726 5092
|
||||
690001 10388 11513 5701 5106
|
||||
691001 10412 11468 5653 5133
|
||||
692001 10424 11402 5667 5202
|
||||
693001 10446 11318 5664 5271
|
||||
694001 10450 11264 5651 5306
|
||||
695001 10436 11222 5666 5333
|
||||
696001 10384 11206 5683 5338
|
||||
697001 10355 11163 5709 5370
|
||||
698001 10349 11159 5745 5419
|
||||
699001 10373 11142 5753 5415
|
||||
700001 10320 11107 5814 5362
|
||||
701001 10257 11101 5856 5358
|
||||
702001 10276 11044 5872 5392
|
||||
703001 10215 11034 5903 5418
|
||||
704001 10235 10985 5887 5437
|
||||
705001 10291 10957 5887 5441
|
||||
706001 10266 10977 5880 5437
|
||||
707001 10263 10991 5876 5440
|
||||
708001 10288 10987 5867 5444
|
||||
709001 10294 10992 5865 5419
|
||||
710001 10304 10965 5863 5426
|
||||
711001 10299 10978 5849 5447
|
||||
712001 10300 11006 5834 5437
|
||||
713001 10308 11020 5825 5432
|
||||
714001 10305 11034 5857 5409
|
||||
715001 10277 11107 5888 5368
|
||||
716001 10296 11090 5890 5348
|
||||
717001 10312 11060 5898 5354
|
||||
718001 10331 11020 5888 5382
|
||||
719001 10363 11049 5850 5371
|
||||
720001 10408 11053 5816 5367
|
||||
721001 10465 11054 5780 5366
|
||||
722001 10486 11056 5792 5361
|
||||
723001 10498 11052 5796 5346
|
||||
724001 10491 11088 5812 5316
|
||||
725001 10496 11098 5809 5313
|
||||
726001 10532 11078 5811 5315
|
||||
727001 10534 11102 5802 5319
|
||||
728001 10560 11096 5800 5323
|
||||
729001 10615 11103 5722 5329
|
||||
730001 10673 11117 5687 5332
|
||||
731001 10691 11165 5654 5316
|
||||
732001 10733 11188 5609 5331
|
||||
733001 10795 11169 5615 5334
|
||||
734001 10792 11177 5614 5341
|
||||
735001 10781 11167 5612 5329
|
||||
736001 10829 11158 5578 5337
|
||||
737001 10860 11140 5578 5346
|
||||
738001 10836 11145 5581 5337
|
||||
739001 10831 11151 5581 5346
|
||||
740001 10842 11155 5565 5358
|
||||
741001 10849 11177 5560 5361
|
||||
742001 10854 11217 5515 5353
|
||||
743001 10881 11262 5494 5331
|
||||
744001 10927 11251 5447 5342
|
||||
745001 10952 11261 5395 5350
|
||||
746001 10911 11249 5391 5404
|
||||
747001 10896 11221 5391 5400
|
||||
748001 10873 11209 5387 5408
|
||||
749001 10886 11229 5385 5406
|
||||
750001 10912 11227 5404 5382
|
||||
751001 10946 11249 5419 5379
|
||||
752001 10902 11286 5406 5391
|
||||
753001 10917 11291 5403 5381
|
||||
754001 10911 11299 5405 5378
|
||||
755001 10898 11261 5402 5397
|
||||
756001 10887 11212 5403 5416
|
||||
757001 10948 11152 5373 5446
|
||||
758001 10974 11129 5353 5495
|
||||
759001 11005 11065 5343 5534
|
||||
760001 11040 10993 5328 5583
|
||||
761001 11078 10903 5306 5644
|
||||
762001 11128 10881 5276 5657
|
||||
763001 11151 10893 5278 5661
|
||||
764001 11213 10889 5227 5659
|
||||
765001 11271 10904 5179 5665
|
||||
766001 11346 10900 5122 5656
|
||||
767001 11384 10884 5096 5636
|
||||
768001 11344 10904 5148 5609
|
||||
769001 11260 10918 5205 5600
|
||||
770001 11190 10935 5242 5612
|
||||
771001 11144 10933 5297 5601
|
||||
772001 11119 10947 5288 5612
|
||||
773001 11107 10936 5329 5587
|
||||
774001 11075 10935 5344 5579
|
||||
775001 11105 10938 5288 5593
|
||||
776001 11082 10964 5268 5607
|
||||
777001 11075 11040 5307 5566
|
||||
778001 11128 11039 5271 5580
|
||||
779001 11179 11040 5251 5579
|
||||
780001 11233 11053 5220 5578
|
||||
781001 11294 11039 5184 5576
|
||||
782001 11318 11082 5155 5570
|
||||
783001 11336 11099 5163 5537
|
||||
784001 11345 11077 5152 5533
|
||||
785001 11390 11032 5116 5558
|
||||
786001 11435 10987 5087 5571
|
||||
787001 11485 10991 5022 5569
|
||||
788001 11511 10982 5030 5562
|
||||
789001 11555 10960 5043 5561
|
||||
790001 11536 10916 5034 5554
|
||||
791001 11524 10887 5067 5585
|
||||
792001 11514 10824 5074 5550
|
||||
793001 11544 10757 5034 5517
|
||||
794001 11559 10654 5007 5479
|
||||
795001 11573 10653 5003 5425
|
||||
796001 11586 10694 5021 5350
|
||||
797001 11594 10608 5038 5295
|
||||
798001 11561 10654 5091 5248
|
||||
799001 11515 10683 5134 5252
|
||||
800001 11513 10724 5109 5290
|
||||
801001 11524 10773 5098 5269
|
||||
802001 11549 10805 5065 5268
|
||||
803001 11533 10792 5105 5294
|
||||
804001 11515 10795 5107 5326
|
||||
805001 11453 10836 5142 5348
|
||||
806001 11391 10915 5214 5282
|
||||
807001 11312 11024 5273 5244
|
||||
808001 11249 11102 5312 5212
|
||||
809001 11226 11188 5334 5172
|
||||
810001 11197 11288 5344 5141
|
||||
811001 11171 11370 5366 5105
|
||||
812001 11150 11429 5420 5064
|
||||
813001 11140 11458 5407 5069
|
||||
814001 11108 11560 5367 5078
|
||||
815001 11096 11609 5357 5101
|
||||
816001 11038 11649 5398 5123
|
||||
817001 11024 11661 5435 5104
|
||||
818001 10984 11648 5440 5125
|
||||
819001 10961 11588 5441 5202
|
||||
820001 10976 11577 5439 5245
|
||||
821001 10990 11571 5441 5265
|
||||
822001 10992 11500 5443 5351
|
||||
823001 10991 11461 5418 5403
|
||||
824001 10971 11494 5429 5397
|
||||
825001 10981 11484 5449 5421
|
||||
826001 11012 11452 5430 5487
|
||||
827001 11026 11473 5430 5495
|
||||
828001 11045 11508 5403 5487
|
||||
829001 11107 11485 5366 5539
|
||||
830001 11078 11453 5347 5590
|
||||
831001 11052 11427 5362 5643
|
||||
832001 11022 11397 5375 5681
|
||||
833001 11052 11361 5371 5746
|
||||
834001 11047 11330 5366 5796
|
||||
835001 11060 11296 5360 5865
|
||||
836001 11048 11260 5358 5915
|
||||
837001 11058 11238 5341 5948
|
||||
838001 11092 11259 5308 5970
|
||||
839001 11111 11223 5316 6024
|
||||
840001 11088 11206 5317 6082
|
||||
841001 11105 11159 5321 6134
|
||||
842001 11094 11130 5325 6172
|
||||
843001 11107 11112 5327 6209
|
||||
844001 11111 11038 5338 6213
|
||||
845001 11180 11016 5317 6209
|
||||
846001 11189 10999 5330 6229
|
||||
847001 11167 10998 5336 6235
|
||||
848001 11184 10948 5342 6315
|
||||
849001 11157 10917 5329 6426
|
||||
850001 11158 10860 5345 6491
|
||||
851001 11141 10802 5346 6560
|
||||
852001 11147 10782 5339 6632
|
||||
853001 11164 10736 5352 6700
|
||||
854001 11152 10682 5363 6750
|
||||
855001 11178 10675 5362 6761
|
||||
856001 11231 10612 5348 6810
|
||||
857001 11261 10579 5330 6872
|
||||
858001 11245 10541 5344 6934
|
||||
859001 11278 10509 5360 7002
|
||||
860001 11238 10526 5406 7018
|
||||
861001 11220 10575 5400 7028
|
||||
862001 11211 10586 5409 7032
|
||||
863001 11220 10589 5401 7039
|
||||
864001 11219 10625 5382 7046
|
||||
865001 11273 10648 5382 7053
|
||||
866001 11290 10673 5390 7057
|
||||
867001 11300 10693 5378 7065
|
||||
868001 11289 10699 5391 7054
|
||||
869001 11252 10797 5410 7031
|
||||
870001 11201 10878 5420 7005
|
||||
871001 11147 10986 5452 6976
|
||||
872001 11117 11078 5504 6924
|
||||
873001 11053 11206 5541 6866
|
||||
874001 10986 11323 5588 6816
|
||||
875001 10893 11401 5652 6787
|
||||
876001 10888 11384 5657 6828
|
||||
877001 10890 11391 5663 6844
|
||||
878001 10890 11382 5665 6843
|
||||
879001 10900 11390 5664 6848
|
||||
880001 10903 11401 5654 6877
|
||||
881001 10893 11365 5629 6930
|
||||
882001 10910 11383 5608 6962
|
||||
883001 10922 11379 5593 6968
|
||||
884001 10935 11408 5618 6960
|
||||
885001 10939 11445 5603 6964
|
||||
886001 10945 11486 5612 6961
|
||||
887001 10945 11495 5588 6958
|
||||
888001 10936 11495 5575 7000
|
||||
889001 10933 11477 5589 7071
|
||||
890001 10976 11439 5594 7117
|
||||
891001 11042 11373 5569 7178
|
||||
892001 11032 11328 5589 7216
|
||||
893001 11036 11281 5577 7269
|
||||
894001 11057 11257 5575 7300
|
||||
895001 11048 11232 5582 7356
|
||||
896001 11088 11210 5571 7387
|
||||
897001 11095 11268 5513 7419
|
||||
898001 11070 11338 5538 7408
|
||||
899001 11029 11326 5566 7432
|
||||
900001 10988 11316 5572 7510
|
||||
901001 10993 11266 5570 7588
|
||||
902001 10977 11254 5563 7637
|
||||
903001 10979 11234 5567 7697
|
||||
904001 10915 11260 5551 7768
|
||||
905001 10880 11284 5578 7797
|
||||
906001 10828 11354 5546 7812
|
||||
907001 10740 11440 5511 7871
|
||||
908001 10654 11503 5465 7968
|
||||
909001 10655 11487 5416 8027
|
||||
910001 10682 11456 5339 8100
|
||||
@@ -0,0 +1,924 @@
|
||||
# input : borbu1.fst
|
||||
# include : borbu1.lst
|
||||
# selector : count
|
||||
# distance : chi
|
||||
# phase : 1
|
||||
# alphabet : ACGT
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 284117
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftA RightA LeftC RightC LeftG RightG LeftT RightX chiACGT/not*s chiA chiC chiG chiT
|
||||
1 10619 11521 5303 8176 7756 5291 11375 11287 33.0842 3.51336 22.7604 -23.5408 -3.16408
|
||||
1001 10648 11516 5252 8212 7742 5294 11344 11262 33.4884 3.11949 23.4003 -23.524 -3.28422
|
||||
2001 10686 11570 5253 8172 7731 5310 11323 11228 33.1173 3.2322 23.1044 -23.2661 -3.34483
|
||||
3001 10713 11567 5286 8173 7734 5306 11324 11227 32.9256 3.17724 22.9108 -23.2124 -3.20642
|
||||
4001 10771 11466 5269 8151 7715 5263 11278 11195 33.0028 2.47574 23.1831 -23.1955 -2.75071
|
||||
5001 10792 11397 5270 8210 7725 5207 11257 11259 33.6652 1.90639 23.6448 -23.7902 -2.15803
|
||||
6001 10791 11385 5292 8237 7738 5197 11234 11263 33.7875 1.83912 23.6426 -23.9864 -1.97226
|
||||
7001 10794 11327 5319 8235 7722 5185 11241 11263 33.5679 1.6296 23.5193 -23.8258 -1.82453
|
||||
8001 10823 11333 5349 8244 7697 5187 11246 11242 33.2612 1.56164 23.372 -23.5369 -1.90552
|
||||
9001 10902 11285 5292 8291 7699 5165 11190 11283 34.0008 0.600148 24.1921 -23.8449 -1.3636
|
||||
10001 11015 11179 5241 8375 7737 5126 11088 11346 35.2589 -0.879103 25.3095 -24.531 -0.268041
|
||||
11001 11094 11098 5211 8447 7781 5083 10994 11405 36.4359 -1.9697 26.1257 -25.31 0.740571
|
||||
12001 11170 11042 5179 8484 7805 5037 10928 11474 37.3839 -2.86039 26.7075 -25.9499 1.63827
|
||||
13001 11282 10941 5148 8540 7837 4999 10869 11548 38.5083 -4.15634 27.5282 -26.4716 2.65855
|
||||
14001 11360 10853 5112 8618 7857 4981 10799 11571 39.5823 -5.27694 28.4494 -26.8102 3.28049
|
||||
15001 11429 10812 5058 8659 7886 4942 10754 11609 40.7405 -6.01368 29.2754 -27.42 3.83661
|
||||
16001 11455 10799 5070 8687 7876 4947 10704 11628 40.805 -6.40198 29.2651 -27.3894 4.17603
|
||||
17001 11554 10741 5077 8726 7922 4921 10700 11662 41.5721 -7.1143 29.7476 -27.7494 4.76189
|
||||
18001 11603 10757 5096 8698 7935 4927 10685 11606 41.3279 -7.06085 29.5683 -27.5883 4.76818
|
||||
19001 11648 10798 5118 8653 7944 4951 10672 11574 40.8173 -6.92086 29.1477 -27.3032 4.80617
|
||||
20001 11665 10808 5121 8654 7929 4955 10664 11565 40.7044 -6.98375 29.1115 -27.161 4.7835
|
||||
21001 11638 10889 5120 8642 7880 4998 10652 11559 39.9943 -6.66875 28.7129 -26.6666 4.41997
|
||||
22001 11592 10982 5195 8571 7841 5029 10712 11494 38.4569 -5.6087 27.5662 -25.9576 3.7122
|
||||
23001 11568 10959 5246 8597 7766 5035 10739 11522 37.8045 -5.72624 27.1751 -25.3971 3.58973
|
||||
24001 11578 10902 5255 8635 7751 4993 10746 11561 38.2299 -6.10658 27.4249 -25.6353 3.86561
|
||||
25001 11505 10911 5343 8559 7702 4979 10778 11509 36.918 -5.29078 26.2348 -25.177 3.57735
|
||||
26001 11460 10893 5404 8578 7642 4983 10807 11543 36.2315 -5.22672 25.7094 -24.7437 3.48929
|
||||
27001 11489 10863 5397 8625 7616 4933 10831 11578 36.7842 -5.58325 26.1557 -24.9976 3.59261
|
||||
28001 11487 10821 5415 8666 7581 4916 10857 11589 36.8349 -5.8245 26.3133 -24.8622 3.5166
|
||||
29001 11452 10788 5481 8683 7527 4924 10878 11591 36.1208 -5.80761 25.8245 -24.3425 3.39489
|
||||
30001 11476 10759 5492 8695 7456 4915 10892 11637 35.8645 -6.25129 25.7402 -23.9227 3.51152
|
||||
31001 11509 10719 5487 8735 7403 4887 10918 11656 36.0927 -6.72072 26.0996 -23.7534 3.47944
|
||||
32001 11491 10698 5530 8765 7380 4862 10889 11695 36.0524 -6.84884 25.8346 -23.8917 3.82512
|
||||
33001 11456 10718 5589 8771 7318 4876 10939 11675 35.1447 -6.49678 25.3153 -23.2578 3.33885
|
||||
34001 11428 10707 5639 8756 7293 4866 10941 11661 34.6302 -6.28431 24.8211 -23.0768 3.33634
|
||||
35001 11405 10701 5669 8769 7286 4877 10918 11626 34.3616 -6.18553 24.6284 -22.9201 3.25098
|
||||
36001 11369 10679 5741 8781 7221 4885 10941 11634 33.5128 -6.12058 24.0321 -22.324 3.1216
|
||||
37001 11331 10672 5790 8794 7179 4890 10972 11616 32.9275 -5.9004 23.6895 -21.9163 2.80841
|
||||
38001 11297 10698 5857 8755 7125 4949 10995 11544 31.4699 -5.43851 22.8346 -20.8408 2.24037
|
||||
39001 11257 10743 5911 8714 7061 5001 11041 11484 30.0582 -4.86528 22.0377 -19.794 1.53549
|
||||
40001 11234 10733 5947 8734 6992 5022 11041 11499 29.4029 -4.99172 21.6858 -19.1657 1.41869
|
||||
41001 11257 10666 5962 8780 6954 5019 11044 11521 29.4823 -5.59095 21.8993 -18.8668 1.55316
|
||||
42001 11241 10638 6011 8805 6909 5023 11051 11523 29.0363 -5.69116 21.6271 -18.4589 1.50199
|
||||
43001 11210 10651 6076 8791 6857 5053 11116 11482 27.9665 -5.27127 21.0389 -17.6312 0.919579
|
||||
44001 11162 10723 6132 8737 6807 5082 11158 11426 26.6772 -4.44029 20.1504 -16.9066 0.287457
|
||||
45001 11127 10770 6169 8698 6750 5094 11214 11355 25.7378 -3.77861 19.6167 -16.2216 -0.448155
|
||||
46001 11113 10783 6199 8675 6742 5124 11193 11357 25.1454 -3.66876 19.1172 -15.9131 -0.367673
|
||||
47001 11044 10865 6218 8662 6656 5164 11211 11355 24.0918 -3.11659 18.4654 -15.1253 -0.976879
|
||||
48001 11018 10887 6211 8706 6597 5150 11241 11367 24.1222 -3.05422 18.6405 -14.9405 -1.36546
|
||||
49001 11004 10849 6224 8732 6531 5138 11309 11391 23.9401 -3.21296 18.7195 -14.4783 -1.66157
|
||||
50001 11008 10838 6240 8748 6460 5120 11333 11417 23.6653 -3.39782 18.6267 -14.0901 -1.73656
|
||||
51001 10956 10857 6308 8741 6385 5116 11360 11436 22.7136 -3.03888 17.8683 -13.5543 -1.91782
|
||||
52001 10917 10895 6412 8689 6353 5115 11398 11431 21.4865 -2.3269 16.7192 -13.141 -2.00968
|
||||
53001 10865 10941 6485 8665 6280 5107 11443 11423 20.4702 -1.6899 15.8757 -12.5868 -2.38985
|
||||
54001 10805 10973 6557 8625 6185 5106 11502 11430 19.2321 -1.11109 14.9073 -11.7754 -2.78398
|
||||
55001 10783 10960 6625 8625 6116 5108 11528 11427 18.4053 -1.01245 14.344 -11.1055 -2.9405
|
||||
56001 10741 10985 6692 8574 6075 5101 11536 11414 17.4767 -0.47942 13.444 -10.7455 -2.9997
|
||||
57001 10681 11052 6747 8533 6044 5138 11543 11374 16.5331 0.273553 12.569 -10.1779 -3.42013
|
||||
58001 10680 11002 6762 8558 6022 5128 11527 11388 16.4728 -0.0613001 12.6221 -10.0797 -3.22973
|
||||
59001 10625 11032 6809 8553 5977 5114 11571 11386 16.0382 0.481639 12.1487 -9.83027 -3.57303
|
||||
60001 10576 11044 6867 8559 5946 5111 11563 11410 15.5091 0.758414 11.5766 -9.67607 -3.50919
|
||||
61001 10545 11075 6927 8549 5904 5097 11571 11412 14.952 1.1513 10.9641 -9.44547 -3.57884
|
||||
62001 10510 11088 6998 8547 5843 5092 11598 11423 14.2302 1.4507 10.3192 -8.94943 -3.71688
|
||||
63001 10529 11117 7023 8524 5843 5087 11562 11435 13.9099 1.50194 9.92515 -9.00534 -3.40949
|
||||
64001 10571 11081 7027 8571 5879 5032 11492 11515 14.4716 0.922939 10.2057 -9.9155 -2.47024
|
||||
65001 10588 11010 7030 8651 5910 4989 11441 11548 15.2638 0.333589 10.7839 -10.6264 -1.91297
|
||||
66001 10582 10962 7032 8694 5929 4934 11423 11607 15.9292 0.0499121 11.0856 -11.3512 -1.41287
|
||||
67001 10611 10866 7047 8742 5878 4946 11426 11643 15.6819 -0.803555 11.3103 -10.7655 -1.2075
|
||||
68001 10645 10772 7049 8817 5845 4927 11420 11689 16.0435 -1.6948 11.8326 -10.6638 -0.892232
|
||||
69001 10674 10689 7056 8890 5815 4895 11418 11718 16.5142 -2.42225 12.3443 -10.6789 -0.65497
|
||||
70001 10687 10670 7066 8894 5770 4928 11447 11681 16.0548 -2.58787 12.3352 -9.89108 -1.03306
|
||||
71001 10687 10682 7061 8896 5802 4940 11420 11670 16.1903 -2.53674 12.3661 -10.0925 -0.95588
|
||||
72001 10781 10652 7044 8896 5817 4969 11359 11664 16.3455 -3.30851 12.5777 -9.88818 -0.505281
|
||||
73001 10875 10637 7006 8914 5869 4976 11236 11666 17.1034 -4.1104 12.9842 -10.3425 0.275218
|
||||
74001 10971 10597 6982 8948 5912 4945 11152 11703 18.1439 -4.97264 13.4942 -11.0028 1.14821
|
||||
75001 11073 10501 6936 8986 5946 4889 11061 11748 19.6406 -6.18272 14.2828 -11.7772 2.19691
|
||||
76001 11192 10389 6871 9045 5972 4862 10973 11823 21.3309 -7.76172 15.2635 -12.2915 3.27181
|
||||
77001 11308 10348 6825 9051 5983 4842 10893 11841 22.3245 -8.74565 15.7667 -12.5384 4.01211
|
||||
78001 11400 10345 6780 9063 5980 4848 10845 11810 22.8887 -9.35685 16.2607 -12.4334 4.16474
|
||||
79001 11389 10347 6824 9073 5942 4858 10875 11789 22.3331 -9.21907 16.0001 -11.9479 3.87585
|
||||
80001 11384 10293 6843 9078 5891 4844 10866 11780 22.2118 -9.50819 15.9174 -11.5822 3.93058
|
||||
81001 11375 10323 6845 9101 5878 4868 10815 11773 22.0719 -9.53379 15.818 -11.4271 3.93542
|
||||
82001 11391 10330 6841 9114 5895 4865 10788 11769 22.3156 -9.61472 15.9279 -11.6304 4.07188
|
||||
83001 11405 10326 6867 9124 5864 4876 10776 11762 22.0638 -9.76252 15.7558 -11.2516 4.08174
|
||||
84001 11374 10436 6929 9064 5837 4918 10750 11701 20.5675 -8.90884 14.6958 -10.6581 3.75415
|
||||
85001 11386 10544 6956 8986 5846 4924 10687 11678 19.7872 -8.30863 13.8448 -10.7231 3.97981
|
||||
86001 11376 10663 6964 8937 5834 4942 10647 11643 18.9776 -7.65598 13.2265 -10.5889 3.80394
|
||||
87001 11407 10634 6951 8956 5825 4951 10615 11662 19.2943 -8.14614 13.404 -10.4757 4.06212
|
||||
88001 11442 10619 6968 8960 5829 4944 10558 11680 19.5307 -8.48395 13.2871 -10.5841 4.57175
|
||||
89001 11482 10591 6964 8944 5827 4942 10524 11639 19.6681 -8.76213 13.3548 -10.4602 4.72138
|
||||
90001 11498 10672 6963 8905 5836 4975 10510 11559 19.0532 -8.28672 13.1026 -10.1943 4.33045
|
||||
91001 11501 10755 6990 8825 5845 5016 10471 11499 18.0556 -7.71186 12.3091 -9.84943 4.2436
|
||||
92001 11485 10845 7054 8754 5816 5063 10483 11439 16.5097 -6.94448 11.2843 -9.07784 3.82133
|
||||
93001 11445 10859 7109 8669 5744 5072 10512 11368 15.033 -6.36809 10.3656 -8.16418 3.3673
|
||||
94001 11388 10920 7181 8612 5679 5115 10560 11325 13.289 -5.59041 9.32152 -7.13814 2.73867
|
||||
95001 11338 10980 7212 8595 5609 5138 10587 11304 12.1692 -5.08049 8.74332 -6.40641 2.18889
|
||||
96001 11285 11069 7263 8538 5537 5189 10660 11226 10.3869 -4.14335 7.876 -5.22989 1.1565
|
||||
97001 11251 11129 7296 8500 5467 5210 10720 11180 9.21816 -3.53308 7.29831 -4.36456 0.42076
|
||||
98001 11244 11178 7351 8451 5416 5239 10724 11140 8.04587 -3.13579 6.48959 -3.57278 0.152628
|
||||
99001 11205 11243 7386 8421 5384 5277 10709 11121 7.06124 -2.66522 5.78439 -3.04803 -0.0894082
|
||||
100001 11257 11246 7409 8455 5429 5259 10694 11103 7.51416 -2.77112 6.04094 -3.50388 0.115609
|
||||
101001 11338 11242 7407 8461 5448 5295 10648 11071 7.71926 -3.24162 6.18664 -3.27159 0.318126
|
||||
102001 11323 11332 7427 8408 5429 5358 10600 11031 6.64429 -2.80636 5.40098 -2.66147 0.130379
|
||||
103001 11315 11419 7502 8342 5408 5394 10605 10982 5.24885 -2.08748 4.35593 -2.04918 -0.140022
|
||||
104001 11270 11507 7581 8268 5350 5425 10648 10933 3.64813 -1.15985 3.18026 -1.15536 -0.717459
|
||||
105001 11256 11545 7629 8236 5270 5439 10703 10875 3.05973 -0.718748 2.62359 -0.171085 -1.39027
|
||||
106001 11240 11526 7688 8235 5190 5425 10749 10854 2.94864 -0.600632 2.24769 0.576598 -1.7173
|
||||
107001 11260 11599 7763 8176 5199 5464 10828 10798 2.94177 0.142983 1.51854 1.13267 -2.24603
|
||||
108001 11276 11628 7782 8092 5195 5492 10812 10757 2.89042 0.3999 0.857127 1.55746 -2.24371
|
||||
109001 11344 11619 7812 8075 5231 5496 10871 10707 3.11488 0.453926 0.954698 1.62858 -2.43571
|
||||
110001 11433 11644 7863 8068 5274 5525 10930 10662 3.3909 0.540046 0.91884 1.83466 -2.64505
|
||||
111001 11502 11660 7957 8076 5315 5531 11060 10617 3.90912 0.932068 0.851534 2.00144 -3.11152
|
||||
112001 11491 11662 8017 8094 5293 5537 11146 10602 4.54952 1.23395 0.698512 2.41996 -3.5821
|
||||
113001 11447 11680 8087 8110 5251 5554 11210 10602 5.27175 1.63572 0.267409 2.98575 -4.01617
|
||||
114001 11537 11646 8190 8095 5294 5547 11289 10665 4.78998 1.46811 -0.113996 2.94431 -3.47946
|
||||
115001 11524 11648 8204 8109 5299 5544 11256 10702 4.43235 1.40423 -0.249074 2.7562 -3.16468
|
||||
116001 11576 11643 8171 8103 5308 5550 11225 10695 4.18694 1.04904 -0.0229131 2.73913 -2.98775
|
||||
117001 11547 11669 8161 8101 5302 5587 11213 10695 4.49056 1.16118 -0.168798 2.97807 -3.1495
|
||||
118001 11453 11713 8162 8152 5258 5615 11201 10756 4.82719 1.36726 -0.364441 3.19009 -3.33511
|
||||
119001 11381 11780 8219 8106 5198 5664 11264 10693 6.48416 2.2408 -1.20426 4.21038 -4.2244
|
||||
120001 11382 11863 8244 8027 5191 5713 11265 10641 7.43295 2.81338 -1.9869 4.76506 -4.54754
|
||||
121001 11331 11952 8234 7994 5184 5755 11260 10615 8.22401 3.42213 -2.42474 5.01552 -4.98884
|
||||
122001 11321 11961 8241 7961 5189 5775 11242 10611 8.40245 3.52965 -2.75434 5.14031 -4.91259
|
||||
123001 11270 11942 8311 7951 5155 5795 11289 10619 9.17729 3.81681 -3.32022 5.70816 -5.10371
|
||||
124001 11162 11962 8387 7933 5119 5776 11358 10610 10.2224 4.72463 -4.00437 5.92629 -5.56943
|
||||
125001 11090 11988 8449 7897 5069 5769 11424 10614 11.3047 5.41537 -4.73486 6.38415 -5.94092
|
||||
126001 11024 11998 8493 7906 5026 5768 11491 10586 12.2324 5.94918 -4.98066 6.81999 -6.55129
|
||||
127001 10929 12003 8551 7902 4997 5769 11550 10578 13.1627 6.62087 -5.45899 7.11733 -6.99734
|
||||
128001 10840 12017 8627 7892 4973 5753 11583 10594 13.9065 7.29783 -6.13302 7.19758 -7.12127
|
||||
129001 10815 12017 8656 7858 4938 5773 11613 10560 14.7128 7.56577 -6.54073 7.80162 -7.45505
|
||||
130001 10792 12075 8693 7788 4946 5817 11630 10527 15.7093 8.17894 -7.30884 8.18602 -7.71076
|
||||
131001 10742 12093 8727 7791 4916 5814 11665 10526 16.3146 8.57658 -7.59222 8.41979 -8.00468
|
||||
132001 10775 12028 8685 7801 4935 5784 11593 10533 15.2949 7.96691 -7.16611 7.97356 -7.45197
|
||||
133001 10799 12024 8653 7781 4950 5839 11573 10505 15.3791 7.74423 -7.11142 8.3082 -7.54622
|
||||
134001 10816 12071 8656 7733 4955 5915 11566 10472 16.1043 7.88069 -7.56102 8.92187 -7.77661
|
||||
135001 10892 12032 8633 7744 4999 5918 11552 10456 15.3889 7.37427 -7.07791 8.68852 -7.53988
|
||||
136001 10985 12034 8571 7738 5032 5928 11499 10453 14.6076 6.77544 -6.63944 8.46296 -7.1952
|
||||
137001 10945 12060 8606 7700 5031 5940 11531 10429 15.3295 7.31771 -7.12331 8.65523 -7.46926
|
||||
138001 10913 12038 8617 7739 4989 5949 11559 10440 15.5995 7.24142 -7.02103 9.05176 -7.72514
|
||||
139001 10914 12088 8551 7732 4980 5963 11510 10442 15.5038 7.17352 -6.89563 9.00567 -7.7626
|
||||
140001 10883 12153 8589 7661 4977 5990 11548 10382 16.6758 7.97021 -7.61363 9.39893 -8.26148
|
||||
141001 10851 12179 8636 7621 4924 6045 11589 10340 18.0327 8.36197 -8.2874 10.435 -8.81392
|
||||
142001 10822 12242 8657 7560 4917 6078 11589 10308 18.9367 8.92307 -8.97255 10.7773 -9.07304
|
||||
143001 10796 12274 8677 7487 4919 6116 11591 10246 19.8673 9.43596 -9.60679 11.1909 -9.3887
|
||||
144001 10752 12307 8705 7451 4912 6172 11637 10194 20.9909 9.99184 -10.0737 11.7958 -10.008
|
||||
145001 10713 12335 8744 7424 4883 6219 11660 10155 22.0516 10.4041 -10.6156 12.4854 -10.462
|
||||
146001 10698 12416 8770 7355 4871 6258 11703 10104 23.2778 11.1085 -11.3032 13.0147 -11.0143
|
||||
147001 10716 12483 8782 7299 4873 6296 11670 10056 23.9256 11.4049 -11.858 13.3286 -11.1399
|
||||
148001 10703 12519 8763 7292 4869 6311 11654 10067 24.0454 11.4948 -11.9605 13.3449 -11.1765
|
||||
149001 10694 12526 8771 7294 4876 6311 11632 10074 23.9895 11.5328 -12.0605 13.2274 -11.0485
|
||||
150001 10680 12510 8790 7270 4886 6312 11624 10070 24.0983 11.633 -12.3139 13.2087 -10.9223
|
||||
151001 10671 12563 8784 7233 4888 6347 11603 10003 24.7319 11.9897 -12.6064 13.4708 -11.2929
|
||||
152001 10701 12601 8754 7208 4960 6318 11536 10018 23.9702 12.0361 -12.5768 12.5017 -10.7348
|
||||
153001 10752 12620 8709 7216 5011 6304 11470 10021 23.1098 11.7545 -12.2143 11.8324 -10.3295
|
||||
154001 10720 12646 8741 7210 5020 6324 11508 9978 23.752 12.2418 -12.4181 11.9937 -10.7813
|
||||
155001 10659 12646 8780 7210 5019 6310 11528 9992 24.0813 12.6519 -12.7173 11.8754 -10.8203
|
||||
156001 10643 12703 8806 7170 5028 6298 11512 9989 24.4783 13.1201 -13.243 11.6812 -10.7341
|
||||
157001 10654 12696 8784 7172 5060 6269 11479 10037 23.8026 12.9461 -13.1065 11.0682 -10.2312
|
||||
158001 10741 12623 8730 7228 5085 6252 11411 10081 22.2431 11.8528 -12.2699 10.6401 -9.51317
|
||||
159001 10772 12611 8690 7272 5107 6226 11349 10147 21.136 11.3103 -11.8154 10.0129 -8.88505
|
||||
160001 10794 12546 8662 7342 5131 6160 11355 10152 20.0134 10.9216 -10.8867 9.30392 -8.72758
|
||||
161001 10886 12540 8662 7338 5176 6179 11361 10154 19.5559 10.5398 -10.6876 9.22685 -8.48446
|
||||
162001 10878 12532 8713 7342 5143 6192 11376 10140 20.0472 10.6071 -10.9883 9.71159 -8.62104
|
||||
163001 10861 12538 8722 7315 5141 6196 11381 10142 20.3232 10.7812 -11.2611 9.78175 -8.61992
|
||||
164001 10848 12539 8763 7301 5122 6205 11423 10146 20.8438 10.9835 -11.5964 10.1244 -8.76617
|
||||
165001 10865 12513 8733 7332 5110 6225 11422 10157 20.5441 10.5734 -11.2234 10.3301 -8.80836
|
||||
166001 10909 12460 8677 7341 5117 6218 11427 10195 19.7842 9.96844 -10.703 10.2177 -8.54918
|
||||
167001 10948 12432 8658 7383 5107 6199 11424 10200 19.2408 9.54264 -10.2017 10.1568 -8.48014
|
||||
168001 10967 12431 8620 7417 5106 6201 11427 10202 18.8953 9.29401 -9.72881 10.1052 -8.5957
|
||||
169001 10964 12395 8622 7425 5105 6204 11430 10223 18.7301 9.09686 -9.66981 10.1493 -8.45875
|
||||
170001 11002 12339 8564 7484 5109 6192 11398 10278 17.6141 8.28686 -8.91053 9.86442 -8.05489
|
||||
171001 11046 12278 8534 7537 5138 6177 11379 10305 16.5824 7.64506 -8.21481 9.47377 -7.70032
|
||||
172001 11007 12267 8561 7572 5125 6181 11392 10330 16.6862 7.70107 -8.25118 9.54244 -7.74493
|
||||
173001 11034 12259 8557 7587 5118 6179 11397 10323 16.5727 7.51672 -8.05867 9.62742 -7.77972
|
||||
174001 11048 12293 8563 7560 5108 6184 11404 10293 16.9598 7.71264 -8.26192 9.82218 -7.96336
|
||||
175001 11085 12276 8542 7544 5099 6214 11408 10283 17.0417 7.40628 -8.18914 10.2144 -8.01061
|
||||
176001 11101 12261 8543 7530 5090 6214 11416 10294 17.0554 7.27499 -8.25102 10.3532 -7.91793
|
||||
177001 11129 12209 8533 7560 5093 6221 11444 10282 16.8328 6.91568 -7.79777 10.4976 -8.03192
|
||||
178001 11068 12189 8585 7561 5027 6227 11518 10271 17.8399 7.24545 -8.14645 11.2385 -8.54977
|
||||
179001 11004 12196 8651 7555 4976 6221 11555 10288 18.6337 7.67028 -8.73943 11.6576 -8.72372
|
||||
180001 10943 12184 8697 7592 4937 6213 11620 10264 19.2758 8.04287 -8.7566 12.0025 -9.28069
|
||||
181001 10850 12185 8755 7609 4946 6203 11646 10254 19.6923 8.68291 -9.05395 11.826 -9.51657
|
||||
182001 10756 12183 8830 7599 4916 6199 11702 10261 20.5823 9.34242 -9.67124 12.1142 -9.80114
|
||||
183001 10683 12188 8888 7595 4896 6193 11711 10292 21.061 9.76375 -10.2307 12.1859 -9.75053
|
||||
184001 10676 12140 8895 7626 4937 6139 11676 10374 19.9653 9.49415 -10.0414 11.2833 -8.96281
|
||||
185001 10678 12077 8899 7704 4943 6068 11668 10423 18.8953 9.09939 -9.42354 10.5995 -8.54879
|
||||
186001 10648 11979 8900 7800 4970 6008 11663 10482 17.6571 8.66569 -8.66902 9.7796 -8.11695
|
||||
187001 10641 11896 8916 7873 4967 5963 11668 10532 16.8375 8.21062 -8.17832 9.42297 -7.7724
|
||||
188001 10581 11857 8967 7907 4937 5959 11709 10538 17.2217 8.3799 -8.28024 9.69427 -7.98886
|
||||
189001 10494 11845 8997 7948 4885 5977 11771 10557 17.9441 8.66788 -8.38184 10.2189 -8.49559
|
||||
190001 10378 11849 9041 7957 4853 5984 11819 10557 18.836 9.33989 -8.7752 10.4966 -8.96531
|
||||
191001 10350 11754 9057 8030 4839 5966 11836 10604 18.3052 8.88525 -8.34756 10.4518 -8.78687
|
||||
192001 10349 11693 9061 8090 4850 5952 11806 10645 17.5508 8.40921 -7.98207 10.1526 -8.39795
|
||||
193001 10351 11692 9069 8086 4863 5950 11781 10650 17.4026 8.38875 -8.07292 10.0027 -8.20084
|
||||
194001 10295 11700 9075 8146 4841 5949 11784 10694 17.4111 8.46302 -7.97378 9.95897 -8.29221
|
||||
195001 10327 11603 9098 8217 4870 5894 11769 10773 16.0635 7.75323 -7.46254 9.26517 -7.50931
|
||||
196001 10320 11508 9113 8287 4871 5846 11774 10832 15.1552 7.23672 -6.98016 8.85471 -7.08395
|
||||
197001 10332 11464 9115 8299 4886 5791 11755 10908 14.2643 6.9066 -6.86396 8.22582 -6.40247
|
||||
198001 10458 11399 9059 8335 4919 5763 11696 10959 12.6438 5.70511 -6.07832 7.70488 -5.56839
|
||||
199001 10559 11324 8974 8395 4923 5749 11676 10984 11.3886 4.51926 -4.97438 7.54034 -5.26072
|
||||
200001 10663 11234 8927 8449 4947 5727 11643 11047 9.98187 3.29444 -4.12893 7.15579 -4.53113
|
||||
201001 10639 11236 8943 8433 4954 5714 11667 11069 10.0141 3.52959 -4.32076 7.00427 -4.48271
|
||||
202001 10611 11253 8971 8417 4947 5712 11674 11078 10.301 3.81884 -4.66773 7.04463 -4.48479
|
||||
203001 10597 11291 8934 8430 4947 5697 11636 11132 9.90072 3.80325 -4.61553 6.65065 -4.24563
|
||||
204001 10688 11242 8898 8461 4984 5647 11541 11191 8.31809 2.86459 -4.09667 5.82008 -3.21382
|
||||
205001 10773 11192 8813 8504 5031 5577 11484 11247 6.45479 1.97208 -3.10744 4.70705 -2.44188
|
||||
206001 10862 11109 8729 8569 5073 5524 11438 11320 4.6513 0.809163 -1.97717 3.78585 -1.65466
|
||||
207001 10864 11147 8666 8608 5073 5534 11366 11379 4.14146 0.479828 -1.70616 3.48522 -1.36518
|
||||
208001 10947 11156 8614 8601 5126 5519 11326 11392 3.28404 0.0659688 -1.28156 2.87938 -0.920487
|
||||
209001 11004 11170 8580 8607 5148 5502 11286 11405 2.75238 -0.249352 -0.995048 2.485 -0.589964
|
||||
210001 11081 11148 8534 8629 5188 5449 11220 11454 1.9 -0.897975 -0.458751 1.5987 0.193266
|
||||
211001 11131 11090 8502 8677 5210 5421 11176 11493 2.10982 -1.63251 0.14168 1.10759 0.734462
|
||||
212001 11191 11031 8445 8740 5245 5383 11128 11535 2.99288 -2.4678 1.02417 0.37432 1.29547
|
||||
213001 11245 10979 8420 8756 5276 5334 11122 11583 3.82934 -2.99195 1.50224 -0.271278 1.83895
|
||||
214001 11249 10943 8457 8753 5260 5273 11097 11656 4.32619 -3.20599 1.24206 -0.66686 2.53971
|
||||
215001 11252 10924 8447 8730 5305 5266 11065 11642 4.57979 -3.21346 1.26973 -1.07723 2.80633
|
||||
216001 11346 10882 8398 8744 5363 5241 11022 11657 5.80571 -3.92284 1.93088 -1.74463 3.39788
|
||||
217001 11431 10815 8333 8785 5403 5197 10975 11710 7.41468 -4.87947 2.79741 -2.51815 4.12331
|
||||
218001 11524 10726 8257 8849 5431 5165 10921 11774 9.26554 -6.13219 3.84046 -3.12401 4.87216
|
||||
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||||
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||||
221001 11616 10610 8165 8947 5463 5115 10793 11840 11.7494 -7.72415 5.12165 -4.05706 5.97459
|
||||
222001 11617 10662 8073 8957 5489 5146 10737 11843 12.0611 -7.82273 5.52907 -4.31021 5.92674
|
||||
223001 11614 10655 8077 8961 5504 5157 10702 11858 12.2589 -7.93704 5.45169 -4.40587 6.17666
|
||||
224001 11653 10644 8061 8953 5528 5170 10655 11865 12.7274 -8.27085 5.51696 -4.50963 6.54266
|
||||
225001 11661 10679 8078 8870 5533 5206 10613 11843 12.2681 -8.04072 4.80331 -4.17506 6.73428
|
||||
226001 11663 10749 8095 8820 5537 5247 10600 11783 11.4825 -7.55947 4.31164 -3.80124 6.45467
|
||||
227001 11679 10775 8103 8760 5554 5255 10609 11741 11.0846 -7.24465 4.00956 -3.71666 6.36339
|
||||
228001 11638 10836 8099 8715 5546 5307 10670 11661 9.79871 -6.52076 3.73798 -3.10787 5.46471
|
||||
229001 11644 10861 8112 8686 5538 5370 10720 11595 8.96315 -6.24965 3.53891 -2.32576 4.83185
|
||||
230001 11655 10864 8092 8703 5563 5390 10682 11576 9.19903 -6.39069 3.74805 -2.43378 4.87956
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||||
231001 11680 10869 8120 8690 5591 5392 10714 11578 9.11684 -6.27747 3.63955 -2.51067 4.91533
|
||||
232001 11722 10883 8143 8668 5629 5448 10741 11535 8.80721 -6.19815 3.51642 -2.15223 4.70666
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||||
233001 11795 10851 8093 8683 5671 5444 10684 11538 9.82513 -6.8377 4.06925 -2.54873 5.16954
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||||
234001 11880 10774 8019 8718 5717 5413 10628 11588 11.4946 -7.86352 4.9602 -3.24272 5.93057
|
||||
235001 11954 10710 7985 8785 5766 5377 10616 11624 12.8566 -8.62511 5.86644 -3.9388 6.40078
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||||
236001 11958 10706 7964 8806 5775 5390 10611 11630 13.0658 -8.77942 6.10376 -3.96857 6.37418
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||||
237001 11951 10739 7951 8803 5791 5382 10614 11608 12.9154 -8.51143 6.18254 -4.19588 6.20754
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||||
238001 11966 10757 7920 8802 5776 5388 10613 11624 13.0037 -8.63294 6.29524 -4.10153 6.17386
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||||
239001 12001 10745 7892 8822 5766 5398 10608 11609 13.3057 -8.96366 6.64872 -3.92823 6.08754
|
||||
240001 11989 10751 7913 8802 5771 5403 10584 11623 13.1906 -8.87642 6.3047 -3.94868 6.31347
|
||||
241001 12011 10761 7893 8803 5762 5392 10586 11630 13.3424 -8.97549 6.45019 -3.98771 6.32094
|
||||
242001 12019 10799 7886 8747 5757 5393 10594 11587 12.8506 -8.6369 6.19763 -3.83893 6.11498
|
||||
243001 12027 10851 7841 8740 5783 5415 10556 11568 12.8736 -8.53777 6.33236 -4.01124 6.0538
|
||||
244001 12097 10833 7785 8741 5825 5434 10528 11515 13.4765 -8.94675 6.92779 -4.10495 6.06022
|
||||
245001 12095 10918 7787 8670 5816 5488 10541 11456 12.4087 -8.36959 6.36665 -3.51313 5.57223
|
||||
246001 12020 10965 7799 8690 5792 5479 10536 11516 12.0559 -8.00648 6.05162 -3.6819 5.57342
|
||||
247001 12035 10936 7772 8725 5846 5419 10496 11584 13.1832 -8.32336 6.51148 -4.77393 6.27117
|
||||
248001 12057 10955 7740 8721 5927 5346 10467 11608 14.054 -8.17913 6.87278 -6.11231 6.78397
|
||||
249001 12040 10972 7742 8728 5909 5325 10458 11647 14.1125 -8.13004 6.76146 -6.27131 6.92955
|
||||
250001 12048 10927 7731 8759 5939 5266 10436 11719 15.1606 -8.47196 7.09394 -7.10949 7.56318
|
||||
251001 12050 10986 7714 8731 5932 5259 10432 11717 14.9229 -8.18817 6.9358 -7.18281 7.4798
|
||||
252001 12044 11024 7749 8704 5950 5240 10447 11730 14.7064 -7.7745 6.55145 -7.44931 7.57767
|
||||
253001 12102 10995 7720 8751 5968 5221 10435 11797 15.7142 -8.40653 7.08583 -7.84331 8.03369
|
||||
254001 12167 10945 7652 8813 5995 5190 10371 11854 17.2677 -9.32358 7.96353 -8.50598 8.68769
|
||||
255001 12186 10916 7610 8854 6053 5141 10332 11875 18.4481 -9.61619 8.63152 -9.49747 9.11903
|
||||
256001 12254 10926 7543 8854 6083 5153 10309 11850 18.9798 -9.96216 9.19609 -9.63675 9.14065
|
||||
257001 12279 10941 7480 8869 6127 5167 10238 11874 19.7623 -10.2992 9.58983 -10.0925 9.52101
|
||||
258001 12314 10988 7443 8862 6179 5128 10188 11866 20.4267 -10.1933 9.85327 -10.9337 9.83433
|
||||
259001 12360 10993 7406 8865 6223 5114 10140 11877 21.1969 -10.4535 10.18 -11.4666 10.2429
|
||||
260001 12420 10930 7348 8888 6261 5110 10103 11874 22.2319 -11.1551 10.9159 -11.7739 10.5849
|
||||
261001 12494 10881 7284 8910 6302 5097 10054 11873 23.3986 -11.8656 11.6833 -12.2051 11.0108
|
||||
262001 12522 10927 7282 8849 6305 5172 10080 11807 22.4604 -11.6045 11.3527 -11.4075 10.5258
|
||||
263001 12520 10949 7292 8834 6311 5160 10081 11805 22.3579 -11.3975 11.1962 -11.5457 10.5505
|
||||
264001 12506 10997 7257 8857 6304 5147 10047 11842 22.6411 -11.3754 11.3364 -11.882 10.6547
|
||||
265001 12568 10917 7230 8911 6340 5108 10007 11907 24.1212 -12.2395 12.0169 -12.5383 11.4198
|
||||
266001 12604 10848 7209 8961 6314 5069 10018 11962 24.957 -12.9255 12.5674 -12.6857 11.7012
|
||||
267001 12630 10772 7215 8997 6319 5034 10018 12032 25.8264 -13.5142 12.8573 -13.0134 12.2355
|
||||
268001 12641 10764 7210 9012 6324 5032 9983 12044 26.1534 -13.7239 12.9381 -13.1377 12.4765
|
||||
269001 12649 10790 7209 8986 6308 5043 9992 12028 25.7916 -13.588 12.7631 -12.8794 12.3206
|
||||
270001 12714 10755 7163 8992 6296 5056 9986 12038 26.2853 -14.2194 13.2031 -12.6341 12.4411
|
||||
271001 12684 10783 7186 8956 6267 5081 10038 11985 25.2739 -13.7324 12.8351 -12.0534 11.8392
|
||||
272001 12610 10829 7238 8902 6244 5135 10090 11932 23.7461 -12.9258 12.026 -11.2971 11.1604
|
||||
273001 12606 10863 7293 8861 6210 5202 10147 11851 22.338 -12.4708 11.4305 -10.1982 10.4311
|
||||
274001 12542 10929 7341 8818 6168 5277 10160 11834 20.903 -11.8856 10.4939 -9.2762 9.97486
|
||||
275001 12538 10883 7341 8857 6174 5232 10159 11877 21.5651 -12.149 10.8023 -9.75184 10.2794
|
||||
276001 12529 10874 7338 8872 6195 5222 10144 11878 21.8195 -12.1591 10.9335 -10.0427 10.3851
|
||||
277001 12552 10825 7311 8907 6202 5213 10135 11902 22.5017 -12.6501 11.4049 -10.2035 10.5887
|
||||
278001 12537 10841 7302 8908 6210 5209 10141 11892 22.4306 -12.4744 11.464 -10.3334 10.4555
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||||
279001 12501 10846 7333 8912 6225 5201 10168 11851 22.0586 -12.0514 11.3716 -10.4333 10.1577
|
||||
280001 12457 10830 7343 8926 6214 5205 10200 11832 21.7528 -11.8724 11.3996 -10.2901 9.81808
|
||||
281001 12428 10842 7389 8904 6199 5205 10198 11829 21.2606 -11.5801 10.8795 -10.1364 9.83894
|
||||
282001 12427 10812 7417 8876 6207 5202 10200 11788 21.0622 -11.4868 10.683 -10.0345 9.84118
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||||
283001 12394 10836 7422 8887 6205 5190 10226 11756 20.75 -11.1044 10.7327 -10.1264 9.46157
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||||
284001 12327 10832 7496 8867 6185 5195 10284 11745 19.8181 -10.548 10.1093 -9.78802 9.13749
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||||
285001 12282 10820 7544 8878 6185 5179 10306 11762 19.611 -10.2898 9.84431 -9.90756 9.14565
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||||
286001 12270 10780 7572 8907 6180 5166 10326 11788 19.763 -10.4236 9.88434 -9.94723 9.23448
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||||
287001 12260 10752 7587 8916 6178 5194 10322 11780 19.6465 -10.5541 9.82618 -9.65843 9.20633
|
||||
288001 12282 10682 7555 8946 6189 5209 10294 11803 20.363 -11.2231 10.2653 -9.64769 9.49944
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||||
289001 12261 10635 7538 9009 6214 5216 10282 11786 20.8376 -11.4741 10.8166 -9.84943 9.4096
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||||
290001 12239 10620 7532 9033 6214 5236 10286 11770 20.7848 -11.5128 10.9777 -9.70921 9.20243
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||||
291001 12212 10619 7562 9035 6226 5233 10272 11771 20.6842 -11.3426 10.752 -9.84304 9.31072
|
||||
292001 12184 10617 7562 9058 6225 5230 10278 11731 20.5587 -11.1794 10.9199 -9.86506 9.00653
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||||
293001 12196 10611 7563 9063 6225 5210 10276 11757 20.8121 -11.2847 10.9594 -10.0508 9.20179
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||||
294001 12182 10596 7598 9058 6214 5208 10259 11767 20.6961 -11.2874 10.6471 -9.96447 9.3954
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||||
295001 12189 10587 7609 8999 6195 5196 10259 11747 20.4009 -11.1896 10.2955 -9.76646 9.4662
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||||
296001 12182 10597 7593 8988 6198 5201 10269 11743 20.3084 -11.0971 10.3257 -9.75932 9.34994
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||||
297001 12180 10571 7605 8957 6183 5188 10301 11701 20.0002 -10.9745 10.2436 -9.54805 9.13636
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||||
298001 12134 10624 7638 8928 6127 5205 10379 11651 18.6781 -10.2793 9.79243 -8.8516 8.30453
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||||
299001 12060 10626 7718 8896 6061 5218 10433 11674 17.509 -9.81499 8.88741 -8.14515 8.0561
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||||
300001 11967 10701 7809 8811 5999 5222 10493 11650 15.6585 -8.64907 7.56652 -7.50422 7.53769
|
||||
301001 11872 10763 7896 8748 5960 5210 10536 11664 14.3325 -7.62184 6.38919 -7.27238 7.32249
|
||||
302001 11847 10768 7915 8741 5962 5213 10538 11647 14.0686 -7.39657 6.2101 -7.24104 7.22622
|
||||
303001 11845 10806 7955 8704 5976 5199 10554 11612 13.633 -6.8849 5.81905 -7.33707 7.12472
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||||
304001 11833 10880 7966 8655 5987 5244 10567 11559 12.7348 -6.29238 5.3709 -6.98913 6.69969
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||||
305001 11739 10926 8037 8602 5960 5279 10618 11513 11.2156 -5.3298 4.44046 -6.37407 6.0858
|
||||
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||||
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315001 11241 11264 8430 8181 5716 5500 11070 11169 2.59529 0.862367 -1.32283 -1.53902 1.36871
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329001 10915 10390 8732 7793 5270 5266 11644 10591 5.11638 1.61619 -2.71609 3.62856 -1.7383
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331001 10801 10268 8793 7718 5190 5226 11724 10500 6.30433 2.10926 -3.25227 4.41999 -2.27641
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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350001 10715 10112 8800 7577 5389 5004 11628 10499 4.55064 2.73798 -3.43037 1.1083 -0.464707
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||||
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353001 10738 10038 8823 7464 5399 5105 11619 10392 5.43 2.56335 -4.08771 2.40796 -0.637584
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362001 10966 9664 8718 7491 5347 5058 11616 10800 4.82406 -1.57409 -2.99992 2.49156 2.36357
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363001 10962 9625 8732 7490 5316 5078 11661 10801 5.12778 -1.74756 -3.03318 3.05089 2.17534
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364001 10938 9569 8767 7506 5267 5085 11724 10834 5.5546 -1.95557 -3.11308 3.62111 2.05562
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365001 11006 9539 8716 7488 5261 5114 11709 10835 5.97277 -2.59311 -2.86121 3.99546 2.19077
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366001 11019 9566 8705 7436 5239 5188 11735 10783 6.61757 -2.45979 -3.20034 4.96716 1.68131
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367001 11001 9591 8766 7388 5227 5243 11808 10752 7.32823 -1.95625 -3.87505 5.77864 1.21135
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368001 10937 9586 8832 7318 5179 5248 11854 10713 8.16938 -1.33686 -4.73943 6.4566 0.895423
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371001 10952 9482 8869 7247 5158 5264 11872 10666 9.06067 -1.66566 -5.13013 7.20816 1.02246
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372001 10995 9394 8859 7232 5127 5268 11864 10677 9.58326 -2.42517 -5.0254 7.67502 1.34044
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||||
373001 10996 9386 8862 7222 5119 5302 11872 10685 9.99287 -2.53646 -5.17224 8.06121 1.29944
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||||
374001 10918 9430 8897 7194 5107 5357 11880 10662 10.5905 -1.89181 -5.8388 8.58563 0.880896
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||||
375001 10882 9432 8909 7176 5108 5365 11862 10710 10.7815 -1.80691 -6.22735 8.53566 1.15687
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||||
376001 10934 9426 8839 7162 5177 5339 11798 10760 10.0271 -2.22697 -5.86925 7.59038 1.87636
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||||
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||||
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|
||||
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||||
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||||
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|
||||
383001 10784 9484 8984 6735 5044 5651 12034 10370 16.0393 0.360987 -9.60064 12.7928 -1.14039
|
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|
||||
879001 10899 11390 5664 6848 7944 5894 11826 10783 21.1334 6.26135 12.8137 -15.0886 -3.94476
|
||||
880001 10902 11401 5654 6877 7940 5853 11839 10781 21.6231 6.32536 13.1637 -15.4276 -4.03151
|
||||
881001 10892 11365 5629 6930 7922 5836 11892 10746 22.124 6.2263 13.9065 -15.386 -4.53711
|
||||
882001 10909 11383 5608 6962 7922 5844 11902 10685 22.476 6.25166 14.3894 -15.2973 -5.00285
|
||||
883001 10921 11379 5593 6968 7919 5831 11908 10644 22.7079 6.25597 14.6641 -15.307 -5.21263
|
||||
884001 10934 11408 5618 6960 7925 5821 11890 10608 22.6704 6.47035 14.4437 -15.3627 -5.23921
|
||||
885001 10938 11445 5603 6964 7916 5831 11909 10557 22.8503 6.68903 14.6158 -15.2015 -5.71685
|
||||
886001 10944 11486 5612 6961 7924 5826 11889 10524 22.9481 6.92888 14.5111 -15.3054 -5.81209
|
||||
887001 10944 11495 5588 6958 7911 5834 11919 10520 23.0323 6.95295 14.682 -15.158 -6.06781
|
||||
888001 10935 11495 5575 7000 7906 5845 11946 10467 23.4147 7.01314 15.1613 -15.017 -6.60963
|
||||
889001 10932 11477 5589 7071 7936 5807 11954 10482 24.0549 6.94947 15.6609 -15.5748 -6.51985
|
||||
890001 10975 11439 5594 7117 7988 5741 11921 10513 24.6885 6.60406 16.151 -16.4401 -5.89752
|
||||
891001 11041 11373 5569 7178 8021 5670 11868 10560 25.4357 5.82766 16.9773 -17.2774 -5.12595
|
||||
892001 11031 11328 5589 7216 8029 5597 11860 10604 25.9173 5.6898 17.1847 -17.95 -4.67097
|
||||
893001 11035 11281 5577 7269 8041 5532 11856 10664 26.6322 5.3445 17.7382 -18.6591 -4.23147
|
||||
894001 11056 11257 5575 7300 8040 5459 11854 10718 27.1852 5.10156 18.0601 -19.3005 -3.78637
|
||||
895001 11047 11232 5582 7356 8027 5411 11869 10736 27.683 4.99035 18.4593 -19.6611 -3.76029
|
||||
896001 11087 11210 5571 7387 8058 5383 11869 10703 28.2417 4.81054 18.9979 -19.9862 -3.75266
|
||||
897001 11094 11268 5513 7419 8074 5438 11809 10703 28.5055 4.6497 19.416 -19.9735 -3.87588
|
||||
898001 11069 11338 5538 7408 8001 5448 11884 10646 28.0743 5.26517 19.0754 -19.3338 -4.7729
|
||||
899001 11028 11326 5566 7432 7953 5433 11956 10588 28.072 5.61083 19.1301 -18.9882 -5.48132
|
||||
900001 10987 11316 5572 7510 7923 5397 11963 10601 28.5788 5.6012 19.5506 -19.2667 -5.65201
|
||||
901001 10992 11266 5570 7588 7939 5340 11957 10654 29.3381 5.20645 20.1876 -19.9572 -5.2715
|
||||
902001 10976 11254 5563 7637 7931 5259 11979 10708 30.113 5.1925 20.6204 -20.7083 -5.07893
|
||||
903001 10978 11234 5567 7697 7965 5186 12005 10750 31.0471 5.15989 21.159 -21.5913 -4.83832
|
||||
904001 10914 11260 5551 7768 7920 5203 11946 10833 31.1313 4.96694 21.2615 -21.6882 -4.69675
|
||||
905001 10879 11284 5578 7797 7920 5196 11920 10821 31.2175 5.22133 21.1323 -21.8649 -4.75588
|
||||
906001 10827 11354 5546 7812 7894 5227 11834 10858 31.161 5.31308 20.9843 -21.92 -4.68489
|
||||
907001 10739 11440 5511 7871 7805 5283 11783 10945 30.8868 5.33094 20.8858 -21.5659 -4.92708
|
||||
908001 10653 11503 5465 7968 7744 5314 11689 11064 31.099 5.08928 21.1125 -21.7423 -4.77304
|
||||
909001 10654 11487 5416 8027 7779 5285 11580 11149 31.9224 4.51634 21.677 -22.6519 -3.95515
|
||||
910001 10681 11456 5339 8100 7792 5254 11481 11224 32.9158 3.66336 22.6137 -23.4083 -3.27116
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# include : borbu1.lst
|
||||
# selector : count
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 2
|
||||
# alphabet : ACGT
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 284101
|
||||
# valid : 284087
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftA RightA LeftC
|
||||
1 12255 13322 4686 5089
|
||||
1001 12213 13363 4707 5081
|
||||
2001 12233 13341 4717 5090
|
||||
3001 12265 13363 4727 5077
|
||||
4001 12290 13274 4726 5055
|
||||
5001 12309 13238 4742 5057
|
||||
6001 12269 13241 4763 5044
|
||||
7001 12318 13175 4768 5032
|
||||
8001 12349 13177 4776 5031
|
||||
9001 12344 13178 4778 5019
|
||||
10001 12357 13159 4805 5016
|
||||
11001 12394 13131 4838 5020
|
||||
12001 12408 13102 4857 5013
|
||||
13001 12461 13061 4865 5022
|
||||
14001 12495 13019 4874 5025
|
||||
15001 12520 13002 4883 4999
|
||||
16001 12528 13008 4903 4998
|
||||
17001 12565 13031 4943 4978
|
||||
18001 12600 13013 4968 4974
|
||||
19001 12627 13037 4982 4969
|
||||
20001 12646 13053 4977 4979
|
||||
21001 12600 13104 4959 5020
|
||||
22001 12600 13125 4979 5022
|
||||
23001 12598 13144 4984 5022
|
||||
24001 12635 13125 4990 5000
|
||||
25001 12615 13093 5000 4979
|
||||
26001 12599 13127 5009 4970
|
||||
27001 12622 13143 5023 4953
|
||||
28001 12640 13123 5026 4947
|
||||
29001 12641 13113 5030 4943
|
||||
30001 12668 13106 5004 4931
|
||||
31001 12691 13065 5004 4913
|
||||
32001 12683 13052 5011 4920
|
||||
33001 12676 13094 5003 4923
|
||||
34001 12678 13081 5008 4916
|
||||
35001 12668 13048 5015 4916
|
||||
36001 12638 13048 5036 4905
|
||||
37001 12632 13008 5051 4894
|
||||
38001 12609 13013 5042 4925
|
||||
39001 12615 13017 5013 4958
|
||||
40001 12585 13024 5006 4979
|
||||
41001 12612 12983 4991 4992
|
||||
42001 12616 12965 4968 5003
|
||||
43001 12617 12955 4971 5010
|
||||
44001 12592 12991 4955 5014
|
||||
45001 12599 12964 4921 5024
|
||||
46001 12593 12978 4942 5032
|
||||
47001 12514 13062 4931 5041
|
||||
48001 12431 13109 4946 5026
|
||||
49001 12402 13103 4932 5010
|
||||
50001 12410 13092 4913 5009
|
||||
51001 12397 13107 4900 4998
|
||||
52001 12407 13157 4916 4995
|
||||
53001 12394 13173 4896 4988
|
||||
54001 12397 13173 4879 4992
|
||||
55001 12364 13168 4883 5008
|
||||
56001 12364 13151 4872 5017
|
||||
57001 12356 13194 4859 5037
|
||||
58001 12378 13183 4860 5022
|
||||
59001 12384 13180 4845 5017
|
||||
60001 12416 13191 4829 5015
|
||||
61001 12438 13201 4819 5024
|
||||
62001 12427 13223 4804 5018
|
||||
63001 12437 13257 4822 5012
|
||||
64001 12501 13242 4826 5017
|
||||
65001 12570 13215 4817 5009
|
||||
66001 12561 13229 4838 4980
|
||||
67001 12561 13199 4841 4984
|
||||
68001 12588 13170 4841 4991
|
||||
69001 12583 13159 4858 4980
|
||||
70001 12548 13203 4865 4973
|
||||
71001 12554 13215 4882 4978
|
||||
72001 12642 13159 4867 5015
|
||||
73001 12662 13154 4890 5032
|
||||
74001 12712 13135 4922 5025
|
||||
75001 12784 13071 4923 5020
|
||||
76001 12789 13035 4932 5029
|
||||
77001 12825 12991 4958 5029
|
||||
78001 12842 13016 4970 5029
|
||||
79001 12847 13008 4974 5032
|
||||
80001 12832 12954 4967 5017
|
||||
81001 12766 13006 4979 5019
|
||||
82001 12738 13022 4992 5014
|
||||
83001 12750 13047 4993 5006
|
||||
84001 12741 13077 4991 5028
|
||||
85001 12735 13119 5007 5035
|
||||
86001 12728 13157 4998 5055
|
||||
87001 12734 13183 4980 5070
|
||||
88001 12766 13162 4998 5058
|
||||
89001 12794 13119 4999 5057
|
||||
90001 12806 13103 5019 5080
|
||||
91001 12821 13125 5028 5081
|
||||
92001 12819 13146 5020 5091
|
||||
93001 12811 13119 5012 5070
|
||||
94001 12794 13152 4994 5083
|
||||
95001 12778 13191 4976 5086
|
||||
96001 12776 13240 4960 5090
|
||||
97001 12754 13269 4943 5099
|
||||
98001 12742 13306 4933 5097
|
||||
99001 12707 13369 4900 5111
|
||||
100001 12748 13406 4923 5116
|
||||
101001 12797 13448 4930 5136
|
||||
102001 12791 13498 4934 5161
|
||||
103001 12804 13547 4958 5148
|
||||
104001 12805 13602 4956 5133
|
||||
105001 12807 13633 4920 5143
|
||||
106001 12860 13602 4889 5133
|
||||
107001 12936 13619 4892 5153
|
||||
108001 12956 13568 4914 5158
|
||||
109001 13036 13517 4938 5171
|
||||
110001 13133 13497 4982 5192
|
||||
111001 13241 13523 5021 5198
|
||||
112001 13240 13526 5026 5206
|
||||
113001 13211 13549 5048 5207
|
||||
114001 13346 13520 5098 5191
|
||||
115001 13356 13516 5084 5191
|
||||
116001 13342 13526 5088 5192
|
||||
117001 13346 13522 5072 5222
|
||||
118001 13270 13588 5053 5242
|
||||
119001 13236 13639 5053 5240
|
||||
120001 13237 13688 5044 5239
|
||||
121001 13185 13734 5032 5248
|
||||
122001 13167 13737 5022 5261
|
||||
123001 13179 13736 5013 5267
|
||||
124001 13154 13713 5013 5268
|
||||
125001 13123 13719 5020 5245
|
||||
126001 13097 13730 5004 5248
|
||||
127001 13056 13722 5021 5237
|
||||
128001 13013 13725 5022 5238
|
||||
129001 12995 13689 5003 5258
|
||||
130001 13019 13693 5001 5286
|
||||
131001 13030 13693 4980 5284
|
||||
132001 13027 13644 4977 5274
|
||||
133001 13031 13592 4979 5299
|
||||
134001 13058 13584 4981 5331
|
||||
135001 13108 13576 5022 5306
|
||||
136001 13138 13572 5019 5314
|
||||
137001 13145 13564 5018 5308
|
||||
138001 13126 13553 5003 5334
|
||||
139001 13096 13597 4975 5335
|
||||
140001 13128 13602 4970 5344
|
||||
141001 13147 13597 4946 5365
|
||||
142001 13128 13566 4947 5390
|
||||
143001 13118 13542 4940 5396
|
||||
144001 13099 13569 4933 5415
|
||||
145001 13059 13591 4916 5433
|
||||
146001 13065 13578 4921 5438
|
||||
147001 13092 13547 4927 5468
|
||||
148001 13071 13557 4917 5507
|
||||
149001 13050 13590 4913 5509
|
||||
150001 13048 13583 4900 5498
|
||||
151001 13006 13604 4896 5499
|
||||
152001 13006 13627 4931 5497
|
||||
153001 13019 13648 4963 5490
|
||||
154001 13016 13672 4977 5491
|
||||
155001 12977 13697 4998 5472
|
||||
156001 12968 13756 4997 5453
|
||||
157001 12958 13788 5009 5445
|
||||
158001 12992 13747 5017 5456
|
||||
159001 12973 13782 5027 5448
|
||||
160001 13002 13731 5028 5415
|
||||
161001 13078 13747 5044 5421
|
||||
162001 13106 13761 5021 5430
|
||||
163001 13106 13768 5009 5427
|
||||
164001 13105 13784 5012 5418
|
||||
165001 13109 13765 4995 5439
|
||||
166001 13165 13718 4997 5428
|
||||
167001 13174 13717 4987 5455
|
||||
168001 13170 13727 4995 5449
|
||||
169001 13169 13730 5010 5451
|
||||
170001 13151 13734 5021 5447
|
||||
171001 13196 13709 5032 5449
|
||||
172001 13191 13744 5022 5461
|
||||
173001 13191 13767 5019 5468
|
||||
174001 13182 13826 5015 5450
|
||||
175001 13205 13850 5025 5431
|
||||
176001 13224 13836 5018 5414
|
||||
177001 13272 13800 5014 5424
|
||||
178001 13236 13790 5018 5419
|
||||
179001 13213 13787 5005 5422
|
||||
180001 13221 13779 4986 5435
|
||||
181001 13194 13779 4991 5435
|
||||
182001 13166 13768 4992 5420
|
||||
183001 13163 13771 4978 5405
|
||||
184001 13210 13753 4977 5389
|
||||
185001 13200 13731 4988 5378
|
||||
186001 13157 13704 5016 5349
|
||||
187001 13161 13683 5028 5315
|
||||
188001 13127 13637 5026 5326
|
||||
189001 13067 13665 5030 5329
|
||||
190001 13023 13674 5026 5325
|
||||
191001 12994 13682 5028 5315
|
||||
192001 13009 13663 5029 5318
|
||||
193001 13007 13656 5031 5320
|
||||
194001 12966 13684 5011 5334
|
||||
195001 13003 13645 5019 5346
|
||||
196001 13029 13618 5009 5357
|
||||
197001 13052 13624 5009 5330
|
||||
198001 13095 13639 5027 5318
|
||||
199001 13114 13664 5038 5315
|
||||
200001 13170 13646 5056 5303
|
||||
201001 13186 13640 5063 5306
|
||||
202001 13161 13642 5057 5298
|
||||
203001 13115 13696 5060 5297
|
||||
204001 13111 13710 5082 5271
|
||||
205001 13133 13704 5085 5257
|
||||
206001 13154 13714 5093 5240
|
||||
207001 13122 13752 5071 5265
|
||||
208001 13176 13745 5089 5269
|
||||
209001 13200 13767 5083 5277
|
||||
210001 13247 13769 5093 5284
|
||||
211001 13280 13746 5097 5283
|
||||
212001 13310 13716 5094 5286
|
||||
213001 13371 13673 5107 5262
|
||||
214001 13416 13614 5122 5225
|
||||
215001 13458 13566 5139 5211
|
||||
216001 13502 13545 5161 5203
|
||||
217001 13556 13495 5146 5195
|
||||
218001 13616 13431 5132 5199
|
||||
219001 13633 13411 5137 5199
|
||||
220001 13606 13412 5137 5193
|
||||
221001 13615 13385 5151 5168
|
||||
222001 13547 13464 5151 5178
|
||||
223001 13504 13503 5179 5177
|
||||
224001 13502 13516 5194 5191
|
||||
225001 13523 13501 5204 5201
|
||||
226001 13529 13541 5202 5221
|
||||
227001 13552 13523 5205 5226
|
||||
228001 13512 13511 5191 5245
|
||||
229001 13525 13480 5185 5266
|
||||
230001 13527 13481 5196 5280
|
||||
231001 13542 13487 5230 5266
|
||||
232001 13597 13476 5238 5299
|
||||
233001 13643 13438 5240 5315
|
||||
234001 13694 13382 5240 5319
|
||||
235001 13730 13361 5256 5312
|
||||
236001 13731 13362 5266 5323
|
||||
237001 13736 13356 5265 5332
|
||||
238001 13713 13376 5261 5328
|
||||
239001 13726 13365 5248 5325
|
||||
240001 13732 13359 5244 5308
|
||||
241001 13724 13379 5231 5305
|
||||
242001 13721 13378 5240 5282
|
||||
243001 13686 13463 5260 5278
|
||||
244001 13697 13456 5297 5271
|
||||
245001 13693 13480 5292 5293
|
||||
246001 13626 13527 5279 5310
|
||||
247001 13595 13558 5301 5275
|
||||
248001 13583 13595 5330 5237
|
||||
249001 13580 13628 5310 5227
|
||||
250001 13575 13617 5324 5184
|
||||
251001 13559 13660 5309 5182
|
||||
252001 13561 13687 5330 5176
|
||||
253001 13595 13690 5329 5185
|
||||
254001 13611 13653 5345 5171
|
||||
255001 13597 13613 5370 5153
|
||||
256001 13564 13635 5388 5153
|
||||
257001 13547 13646 5403 5162
|
||||
258001 13570 13662 5426 5144
|
||||
259001 13599 13659 5425 5147
|
||||
260001 13561 13657 5449 5127
|
||||
261001 13532 13659 5477 5104
|
||||
262001 13562 13677 5507 5104
|
||||
263001 13589 13694 5504 5104
|
||||
264001 13567 13738 5493 5132
|
||||
265001 13608 13708 5497 5132
|
||||
266001 13634 13687 5495 5113
|
||||
267001 13652 13658 5496 5117
|
||||
268001 13678 13635 5488 5130
|
||||
269001 13695 13629 5471 5133
|
||||
270001 13762 13558 5453 5162
|
||||
271001 13778 13565 5450 5152
|
||||
272001 13750 13591 5457 5175
|
||||
273001 13778 13598 5438 5212
|
||||
274001 13725 13646 5418 5250
|
||||
275001 13749 13610 5421 5252
|
||||
276001 13764 13648 5434 5235
|
||||
277001 13786 13628 5423 5234
|
||||
278001 13779 13611 5423 5237
|
||||
279001 13755 13599 5436 5233
|
||||
280001 13713 13586 5434 5239
|
||||
281001 13719 13587 5453 5223
|
||||
282001 13722 13559 5452 5206
|
||||
283001 13734 13537 5451 5214
|
||||
284001 13721 13515 5448 5225
|
||||
285001 13715 13509 5451 5231
|
||||
286001 13752 13462 5461 5245
|
||||
287001 13773 13441 5464 5251
|
||||
288001 13822 13365 5445 5273
|
||||
289001 13825 13309 5428 5288
|
||||
290001 13815 13284 5415 5313
|
||||
291001 13799 13277 5420 5321
|
||||
292001 13784 13270 5421 5305
|
||||
293001 13787 13267 5420 5309
|
||||
294001 13782 13260 5433 5300
|
||||
295001 13783 13240 5437 5273
|
||||
296001 13768 13237 5418 5289
|
||||
297001 13772 13186 5401 5280
|
||||
298001 13749 13203 5392 5284
|
||||
299001 13730 13201 5375 5267
|
||||
300001 13704 13179 5339 5286
|
||||
301001 13672 13169 5324 5313
|
||||
302001 13633 13169 5323 5311
|
||||
303001 13669 13148 5324 5304
|
||||
304001 13679 13156 5327 5317
|
||||
305001 13672 13151 5316 5321
|
||||
306001 13662 13164 5320 5313
|
||||
307001 13664 13184 5319 5335
|
||||
308001 13674 13172 5339 5329
|
||||
309001 13641 13164 5348 5316
|
||||
310001 13626 13158 5350 5310
|
||||
311001 13623 13143 5330 5296
|
||||
312001 13638 13114 5321 5308
|
||||
313001 13671 13098 5311 5320
|
||||
314001 13643 13094 5306 5338
|
||||
315001 13641 13099 5306 5336
|
||||
316001 13648 13088 5297 5360
|
||||
317001 13705 13074 5287 5372
|
||||
318001 13711 13065 5270 5367
|
||||
319001 13712 13054 5257 5371
|
||||
320001 13729 13057 5245 5363
|
||||
321001 13746 13064 5267 5351
|
||||
322001 13739 12952 5270 5307
|
||||
323001 13777 12790 5270 5265
|
||||
324001 13767 12633 5283 5215
|
||||
325001 13743 12506 5285 5172
|
||||
326001 13709 12395 5283 5132
|
||||
327001 13667 12266 5260 5100
|
||||
328001 13587 12187 5212 5073
|
||||
329001 13560 12141 5212 5045
|
||||
330001 13538 12081 5204 5023
|
||||
331001 13495 12008 5194 5015
|
||||
332001 13422 11907 5193 4981
|
||||
333001 13408 11862 5194 4973
|
||||
334001 13410 11868 5190 4985
|
||||
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|
||||
764001 12232 12936 4970 4737
|
||||
765001 12243 12985 4990 4717
|
||||
766001 12244 12973 4995 4732
|
||||
767001 12248 12978 5029 4717
|
||||
768001 12244 12990 5036 4711
|
||||
769001 12232 12958 5023 4717
|
||||
770001 12216 12935 5008 4729
|
||||
771001 12205 12936 5006 4723
|
||||
772001 12199 12938 4998 4730
|
||||
773001 12194 12955 5014 4702
|
||||
774001 12156 12954 5000 4700
|
||||
775001 12123 12966 4994 4714
|
||||
776001 12107 12995 4981 4732
|
||||
777001 12134 13020 4990 4746
|
||||
778001 12140 13029 5022 4741
|
||||
779001 12143 13022 5032 4749
|
||||
780001 12177 13029 5065 4738
|
||||
781001 12188 13021 5099 4743
|
||||
782001 12203 13053 5113 4772
|
||||
783001 12221 13061 5125 4794
|
||||
784001 12229 13031 5147 4793
|
||||
785001 12252 12998 5166 4780
|
||||
786001 12251 12990 5201 4753
|
||||
787001 12264 12971 5185 4778
|
||||
788001 12310 12924 5200 4786
|
||||
789001 12368 12852 5210 4807
|
||||
790001 12385 12790 5175 4806
|
||||
791001 12474 12721 5147 4807
|
||||
792001 12528 12624 5133 4788
|
||||
793001 12548 12528 5142 4759
|
||||
794001 12519 12403 5147 4721
|
||||
795001 12499 12378 5135 4720
|
||||
796001 12502 12385 5142 4713
|
||||
797001 12554 12236 5134 4683
|
||||
798001 12618 12214 5099 4705
|
||||
799001 12642 12238 5080 4711
|
||||
800001 12620 12269 5072 4730
|
||||
801001 12616 12289 5095 4727
|
||||
802001 12626 12312 5098 4749
|
||||
803001 12672 12272 5078 4762
|
||||
804001 12668 12319 5059 4762
|
||||
805001 12648 12354 5053 4779
|
||||
806001 12654 12343 5031 4784
|
||||
807001 12695 12359 4990 4811
|
||||
808001 12689 12401 4962 4847
|
||||
809001 12701 12406 4957 4862
|
||||
810001 12704 12464 4960 4869
|
||||
811001 12689 12504 4971 4876
|
||||
812001 12701 12531 4965 4885
|
||||
813001 12691 12526 4950 4906
|
||||
814001 12679 12564 4920 4947
|
||||
815001 12668 12600 4914 4965
|
||||
816001 12641 12636 4892 4979
|
||||
817001 12631 12635 4908 4971
|
||||
818001 12606 12605 4908 4959
|
||||
819001 12597 12595 4903 4981
|
||||
820001 12593 12603 4893 4986
|
||||
821001 12581 12634 4890 4986
|
||||
822001 12572 12610 4888 5005
|
||||
823001 12576 12599 4876 5011
|
||||
824001 12540 12622 4878 5026
|
||||
825001 12551 12640 4861 5026
|
||||
826001 12579 12645 4859 5028
|
||||
827001 12534 12666 4900 5005
|
||||
828001 12545 12690 4934 5002
|
||||
829001 12587 12682 4939 5010
|
||||
830001 12579 12678 4945 4996
|
||||
831001 12608 12674 4931 5013
|
||||
832001 12659 12661 4891 5023
|
||||
833001 12733 12633 4870 5039
|
||||
834001 12768 12627 4854 5052
|
||||
835001 12770 12618 4828 5039
|
||||
836001 12773 12616 4822 5011
|
||||
837001 12777 12590 4787 5008
|
||||
838001 12792 12618 4801 4984
|
||||
839001 12808 12608 4784 4977
|
||||
840001 12800 12615 4776 4973
|
||||
841001 12827 12589 4772 4950
|
||||
842001 12830 12590 4764 4923
|
||||
843001 12838 12583 4745 4946
|
||||
844001 12869 12506 4731 4929
|
||||
845001 12933 12419 4737 4950
|
||||
846001 12944 12396 4761 4931
|
||||
847001 12936 12398 4776 4907
|
||||
848001 12976 12395 4784 4904
|
||||
849001 12945 12409 4777 4908
|
||||
850001 12961 12393 4782 4892
|
||||
851001 12946 12390 4794 4881
|
||||
852001 12972 12364 4779 4882
|
||||
853001 12998 12359 4794 4873
|
||||
854001 12986 12353 4793 4861
|
||||
855001 12960 12377 4794 4855
|
||||
856001 12947 12367 4814 4840
|
||||
857001 12906 12424 4845 4830
|
||||
858001 12881 12437 4860 4819
|
||||
859001 12935 12432 4892 4807
|
||||
860001 12940 12429 4872 4823
|
||||
861001 12877 12509 4867 4820
|
||||
862001 12824 12568 4879 4822
|
||||
863001 12788 12566 4899 4833
|
||||
864001 12778 12570 4895 4837
|
||||
865001 12807 12593 4920 4841
|
||||
866001 12790 12583 4922 4858
|
||||
867001 12829 12545 4905 4865
|
||||
868001 12823 12566 4901 4881
|
||||
869001 12808 12646 4909 4868
|
||||
870001 12805 12655 4870 4898
|
||||
871001 12826 12722 4841 4922
|
||||
872001 12847 12776 4824 4923
|
||||
873001 12830 12793 4805 4934
|
||||
874001 12833 12826 4786 4960
|
||||
875001 12797 12849 4765 4969
|
||||
876001 12797 12844 4768 4974
|
||||
877001 12867 12829 4760 4967
|
||||
878001 12951 12763 4734 4977
|
||||
879001 12990 12730 4717 4996
|
||||
880001 12973 12747 4729 4993
|
||||
881001 12982 12736 4715 4990
|
||||
882001 12991 12735 4705 5013
|
||||
883001 12950 12725 4721 4992
|
||||
884001 12932 12733 4728 4984
|
||||
885001 12931 12772 4727 5001
|
||||
886001 12939 12795 4734 5001
|
||||
887001 12957 12807 4701 5016
|
||||
888001 12944 12822 4696 5028
|
||||
889001 12964 12819 4712 5023
|
||||
890001 12989 12819 4741 5006
|
||||
891001 13026 12783 4742 4991
|
||||
892001 13031 12773 4743 4976
|
||||
893001 13017 12773 4753 4957
|
||||
894001 13024 12757 4741 4942
|
||||
895001 13029 12738 4744 4929
|
||||
896001 13062 12704 4781 4902
|
||||
897001 13047 12762 4790 4927
|
||||
898001 13024 12797 4797 4932
|
||||
899001 13004 12794 4776 4936
|
||||
900001 12982 12805 4761 4956
|
||||
901001 12970 12802 4778 4952
|
||||
902001 12908 12806 4789 4918
|
||||
903001 12862 12865 4819 4882
|
||||
904001 12772 12942 4803 4897
|
||||
905001 12711 12970 4806 4919
|
||||
906001 12630 13041 4789 4944
|
||||
907001 12499 13147 4752 4987
|
||||
908001 12395 13244 4724 5017
|
||||
909001 12385 13230 4723 5028
|
||||
910001 12367 13224 4709 5052
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# include : borbu1.lst
|
||||
# selector : count
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 7
|
||||
# alphabet : ACGT
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 849408
|
||||
# valid : 849367
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftA RightA LeftC
|
||||
1 33401 42069 12563 18275
|
||||
1001 33398 42133 12544 18312
|
||||
2001 33527 42158 12573 18285
|
||||
3001 33656 42179 12640 18272
|
||||
4001 33781 41887 12627 18205
|
||||
5001 33914 41776 12674 18264
|
||||
6001 33937 41760 12733 18283
|
||||
7001 34058 41589 12793 18251
|
||||
8001 34178 41618 12871 18245
|
||||
9001 34278 41568 12834 18281
|
||||
10001 34470 41433 12833 18374
|
||||
11001 34641 41316 12853 18448
|
||||
12001 34784 41230 12868 18468
|
||||
13001 35025 41076 12871 18543
|
||||
14001 35196 40931 12868 18625
|
||||
15001 35342 40865 12836 18647
|
||||
16001 35424 40868 12886 18681
|
||||
17001 35664 40831 12955 18712
|
||||
18001 35814 40796 13016 18690
|
||||
19001 35974 40847 13095 18623
|
||||
20001 36056 40878 13110 18638
|
||||
21001 35998 41046 13082 18697
|
||||
22001 35998 41205 13190 18628
|
||||
23001 36018 41226 13266 18664
|
||||
24001 36116 41165 13319 18658
|
||||
25001 36070 41094 13450 18538
|
||||
26001 36047 41144 13553 18547
|
||||
27001 36161 41151 13570 18579
|
||||
28001 36241 41084 13613 18611
|
||||
29001 36263 41009 13713 18629
|
||||
30001 36354 40982 13707 18629
|
||||
31001 36456 40902 13719 18660
|
||||
32001 36496 40858 13778 18715
|
||||
33001 36511 40947 13839 18721
|
||||
34001 36540 40883 13912 18703
|
||||
35001 36535 40854 13983 18694
|
||||
36001 36547 40829 14074 18710
|
||||
37001 36591 40759 14151 18715
|
||||
38001 36624 40746 14204 18716
|
||||
39001 36673 40756 14251 18717
|
||||
40001 36670 40764 14291 18776
|
||||
41001 36766 40670 14317 18835
|
||||
42001 36822 40637 14378 18863
|
||||
43001 36880 40620 14467 18865
|
||||
44001 36852 40717 14535 18823
|
||||
45001 36869 40737 14569 18774
|
||||
46001 36899 40759 14645 18752
|
||||
47001 36728 40994 14672 18746
|
||||
48001 36638 41131 14683 18775
|
||||
49001 36635 41113 14699 18774
|
||||
50001 36682 41088 14709 18798
|
||||
51001 36648 41134 14787 18775
|
||||
52001 36681 41225 14941 18708
|
||||
53001 36663 41324 15037 18669
|
||||
54001 36670 41358 15099 18631
|
||||
55001 36689 41320 15198 18644
|
||||
56001 36734 41300 15266 18591
|
||||
57001 36720 41410 15330 18576
|
||||
58001 36813 41324 15356 18581
|
||||
59001 36832 41373 15398 18562
|
||||
60001 36884 41405 15451 18553
|
||||
61001 36945 41458 15548 18538
|
||||
62001 36975 41481 15617 18539
|
||||
63001 37055 41543 15690 18501
|
||||
64001 37226 41519 15710 18562
|
||||
65001 37372 41411 15732 18638
|
||||
66001 37392 41389 15770 18643
|
||||
67001 37445 41292 15834 18678
|
||||
68001 37595 41148 15862 18759
|
||||
69001 37667 41076 15911 18808
|
||||
70001 37691 41119 15963 18791
|
||||
71001 37722 41153 15995 18794
|
||||
72001 37968 41086 15993 18824
|
||||
73001 38156 41028 15995 18867
|
||||
74001 38377 40982 16017 18882
|
||||
75001 38617 40791 15999 18894
|
||||
76001 38774 40630 15946 18986
|
||||
77001 38988 40518 15945 18980
|
||||
78001 39163 40542 15930 18981
|
||||
79001 39229 40555 15995 18989
|
||||
80001 39251 40426 16010 18971
|
||||
81001 39190 40561 16031 19006
|
||||
82001 39217 40583 16072 18998
|
||||
83001 39307 40609 16122 18988
|
||||
84001 39327 40734 16208 18959
|
||||
85001 39413 40873 16264 18875
|
||||
86001 39429 41045 16268 18859
|
||||
87001 39535 41048 16241 18894
|
||||
88001 39659 41050 16317 18861
|
||||
89001 39797 40946 16333 18833
|
||||
90001 39875 41034 16387 18805
|
||||
91001 39954 41116 16453 18717
|
||||
92001 39995 41231 16542 18652
|
||||
93001 39981 41165 16613 18529
|
||||
94001 39932 41266 16699 18468
|
||||
95001 39890 41409 16725 18461
|
||||
96001 39884 41541 16778 18417
|
||||
97001 39879 41630 16802 18401
|
||||
98001 39940 41698 16868 18348
|
||||
99001 39900 41835 16886 18353
|
||||
100001 40077 41867 16950 18418
|
||||
101001 40288 41886 16981 18471
|
||||
102001 40311 42061 17023 18450
|
||||
103001 40374 42207 17164 18377
|
||||
104001 40388 42356 17260 18279
|
||||
105001 40461 42417 17278 18259
|
||||
106001 40549 42351 17333 18245
|
||||
107001 40761 42433 17445 18201
|
||||
108001 40840 42380 17480 18116
|
||||
109001 41075 42310 17566 18088
|
||||
110001 41382 42335 17713 18097
|
||||
111001 41723 42370 17883 18122
|
||||
112001 41776 42381 17984 18139
|
||||
113001 41731 42457 18105 18163
|
||||
114001 42132 42354 18308 18133
|
||||
115001 42125 42393 18307 18132
|
||||
116001 42172 42362 18276 18111
|
||||
117001 42117 42411 18248 18145
|
||||
118001 41871 42614 18211 18236
|
||||
119001 41744 42737 18271 18189
|
||||
120001 41755 42867 18287 18113
|
||||
121001 41600 43039 18250 18098
|
||||
122001 41588 43025 18233 18092
|
||||
123001 41553 43033 18303 18085
|
||||
124001 41416 43026 18379 18073
|
||||
125001 41296 43057 18450 18013
|
||||
126001 41207 43081 18468 18021
|
||||
127001 41059 43085 18558 17988
|
||||
128001 40899 43147 18638 17961
|
||||
129001 40849 43100 18655 17932
|
||||
130001 40879 43137 18692 17908
|
||||
131001 40833 43179 18717 17905
|
||||
132001 40819 43040 18686 17887
|
||||
133001 40847 42970 18630 17884
|
||||
134001 40893 43016 18645 17881
|
||||
135001 41070 42948 18693 17843
|
||||
136001 41226 42919 18625 17857
|
||||
137001 41223 42919 18666 17798
|
||||
138001 41176 42916 18640 17871
|
||||
139001 41100 43047 18524 17859
|
||||
140001 41147 43089 18557 17792
|
||||
141001 41149 43086 18580 17779
|
||||
142001 41077 43131 18604 17739
|
||||
143001 41020 43110 18621 17666
|
||||
144001 40972 43172 18644 17644
|
||||
145001 40891 43213 18681 17631
|
||||
146001 40881 43286 18725 17570
|
||||
147001 40940 43320 18742 17551
|
||||
148001 40872 43391 18699 17596
|
||||
149001 40836 43453 18698 17616
|
||||
150001 40831 43378 18717 17578
|
||||
151001 40742 43444 18706 17541
|
||||
152001 40744 43520 18720 17512
|
||||
153001 40760 43576 18720 17499
|
||||
154001 40739 43628 18780 17488
|
||||
155001 40653 43668 18843 17470
|
||||
156001 40650 43790 18860 17398
|
||||
157001 40621 43822 18861 17390
|
||||
158001 40738 43743 18818 17452
|
||||
159001 40746 43784 18769 17490
|
||||
160001 40803 43664 18728 17525
|
||||
161001 41048 43685 18750 17531
|
||||
162001 41117 43676 18774 17544
|
||||
163001 41127 43666 18762 17513
|
||||
164001 41126 43717 18820 17477
|
||||
165001 41139 43690 18760 17526
|
||||
166001 41250 43580 18698 17530
|
||||
167001 41325 43551 18665 17590
|
||||
168001 41344 43542 18622 17648
|
||||
169001 41318 43520 18644 17647
|
||||
170001 41323 43500 18582 17710
|
||||
171001 41402 43427 18572 17755
|
||||
172001 41351 43473 18578 17819
|
||||
173001 41407 43461 18565 17866
|
||||
174001 41411 43557 18555 17836
|
||||
175001 41472 43570 18538 17815
|
||||
176001 41492 43538 18536 17789
|
||||
177001 41592 43421 18517 17838
|
||||
178001 41499 43365 18583 17822
|
||||
179001 41403 43390 18631 17822
|
||||
180001 41370 43368 18645 17874
|
||||
181001 41277 43368 18698 17885
|
||||
182001 41129 43357 18772 17864
|
||||
183001 41079 43346 18799 17858
|
||||
184001 41133 43264 18797 17864
|
||||
185001 41139 43193 18801 17938
|
||||
186001 41072 43040 18828 18005
|
||||
187001 41044 42924 18863 18060
|
||||
188001 40951 42808 18906 18119
|
||||
189001 40788 42871 18920 18177
|
||||
190001 40584 42928 18976 18180
|
||||
191001 40530 42824 18985 18263
|
||||
192001 40537 42733 18985 18331
|
||||
193001 40568 42709 18983 18340
|
||||
194001 40449 42814 18961 18415
|
||||
195001 40564 42653 19002 18518
|
||||
196001 40576 42533 18991 18617
|
||||
197001 40616 42502 18981 18610
|
||||
198001 40788 42454 18946 18629
|
||||
199001 40885 42427 18870 18697
|
||||
200001 41054 42316 18847 18747
|
||||
201001 41066 42274 18867 18745
|
||||
202001 41047 42292 18869 18719
|
||||
203001 40950 42433 18827 18742
|
||||
204001 41060 42414 18797 18735
|
||||
205001 41150 42369 18714 18753
|
||||
206001 41262 42264 18629 18788
|
||||
207001 41172 42409 18521 18862
|
||||
208001 41339 42426 18479 18865
|
||||
209001 41450 42468 18444 18866
|
||||
210001 41559 42468 18421 18883
|
||||
211001 41639 42390 18403 18933
|
||||
212001 41710 42323 18340 19006
|
||||
213001 41835 42220 18353 18987
|
||||
214001 41873 42156 18432 18907
|
||||
215001 41903 42075 18460 18835
|
||||
216001 42082 41969 18444 18838
|
||||
217001 42227 41853 18365 18851
|
||||
218001 42394 41692 18269 18925
|
||||
219001 42421 41639 18244 18982
|
||||
220001 42368 41694 18232 18999
|
||||
221001 42438 41563 18189 18994
|
||||
222001 42321 41733 18083 19028
|
||||
223001 42294 41775 18095 19037
|
||||
224001 42342 41760 18095 19038
|
||||
225001 42373 41760 18123 18961
|
||||
226001 42385 41854 18135 18936
|
||||
227001 42452 41826 18157 18852
|
||||
228001 42339 41905 18134 18810
|
||||
229001 42390 41916 18126 18810
|
||||
230001 42367 41955 18102 18847
|
||||
231001 42475 41953 18173 18818
|
||||
232001 42629 41940 18226 18827
|
||||
233001 42756 41871 18177 18850
|
||||
234001 42886 41751 18102 18887
|
||||
235001 43026 41678 18102 18934
|
||||
236001 43020 41694 18102 18964
|
||||
237001 43047 41737 18080 18957
|
||||
238001 43027 41789 18054 18949
|
||||
239001 43086 41774 18013 18961
|
||||
240001 43083 41784 18020 18929
|
||||
241001 43091 41841 17969 18925
|
||||
242001 43151 41823 17960 18847
|
||||
243001 43103 41990 17925 18832
|
||||
244001 43180 41940 17922 18802
|
||||
245001 43189 42035 17913 18760
|
||||
246001 43016 42164 17890 18828
|
||||
247001 42985 42202 17876 18837
|
||||
248001 43003 42237 17883 18777
|
||||
249001 42952 42323 17850 18793
|
||||
250001 42936 42284 17858 18778
|
||||
251001 42910 42435 17809 18740
|
||||
252001 42937 42483 17879 18703
|
||||
253001 43062 42477 17838 18765
|
||||
254001 43103 42407 17789 18819
|
||||
255001 43086 42332 17772 18840
|
||||
256001 43139 42368 17720 18837
|
||||
257001 43113 42417 17663 18869
|
||||
258001 43179 42473 17648 18853
|
||||
259001 43252 42479 17605 18864
|
||||
260001 43272 42406 17576 18844
|
||||
261001 43318 42324 17545 18838
|
||||
262001 43397 42386 17586 18782
|
||||
263001 43430 42424 17612 18746
|
||||
264001 43329 42551 17556 18808
|
||||
265001 43458 42436 17542 18855
|
||||
266001 43538 42342 17507 18890
|
||||
267001 43596 42248 17508 18930
|
||||
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||||
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||||
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||||
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||||
697001 33307 34808 13108 12829
|
||||
698001 33344 34830 13155 12889
|
||||
699001 33412 34803 13185 12864
|
||||
700001 33321 34683 13264 12770
|
||||
701001 33236 34677 13276 12759
|
||||
702001 33306 34583 13297 12771
|
||||
703001 33232 34580 13299 12813
|
||||
704001 33229 34490 13296 12831
|
||||
705001 33356 34436 13325 12833
|
||||
706001 33310 34462 13313 12821
|
||||
707001 33307 34460 13316 12822
|
||||
708001 33396 34417 13280 12830
|
||||
709001 33392 34398 13266 12783
|
||||
710001 33415 34327 13272 12795
|
||||
711001 33414 34354 13263 12806
|
||||
712001 33387 34423 13240 12780
|
||||
713001 33414 34394 13217 12824
|
||||
714001 33474 34417 13227 12844
|
||||
715001 33488 34546 13244 12821
|
||||
716001 33593 34499 13219 12800
|
||||
717001 33594 34499 13206 12805
|
||||
718001 33574 34514 13210 12803
|
||||
719001 33544 34636 13190 12778
|
||||
720001 33602 34664 13188 12748
|
||||
721001 33714 34658 13185 12727
|
||||
722001 33732 34671 13203 12728
|
||||
723001 33764 34651 13216 12673
|
||||
724001 33738 34702 13257 12650
|
||||
725001 33664 34738 13301 12625
|
||||
726001 33773 34683 13318 12616
|
||||
727001 33763 34758 13305 12610
|
||||
728001 33808 34744 13298 12631
|
||||
729001 33854 34770 13245 12596
|
||||
730001 33871 34843 13249 12569
|
||||
731001 33882 34938 13213 12568
|
||||
732001 33913 35008 13188 12618
|
||||
733001 34049 34985 13217 12645
|
||||
734001 34018 35047 13196 12653
|
||||
735001 33969 35033 13190 12617
|
||||
736001 34021 35018 13150 12643
|
||||
737001 34059 34971 13146 12674
|
||||
738001 34049 34999 13152 12650
|
||||
739001 33994 35011 13138 12676
|
||||
740001 34019 35038 13065 12703
|
||||
741001 34040 35021 13053 12723
|
||||
742001 34094 35012 12996 12745
|
||||
743001 34161 35017 12969 12770
|
||||
744001 34206 34963 12916 12776
|
||||
745001 34187 35024 12839 12826
|
||||
746001 34080 35072 12812 12883
|
||||
747001 34079 34963 12818 12857
|
||||
748001 34040 34893 12804 12883
|
||||
749001 34115 34878 12786 12914
|
||||
750001 34170 34849 12816 12886
|
||||
751001 34284 34866 12833 12913
|
||||
752001 34189 34926 12813 12941
|
||||
753001 34202 34942 12810 12918
|
||||
754001 34187 34986 12820 12902
|
||||
755001 34132 34921 12821 12917
|
||||
756001 34153 34852 12811 12915
|
||||
757001 34228 34807 12781 12919
|
||||
758001 34197 34840 12782 12966
|
||||
759001 34230 34763 12807 12982
|
||||
760001 34282 34694 12791 13022
|
||||
761001 34329 34565 12789 13068
|
||||
762001 34371 34536 12766 13071
|
||||
763001 34395 34596 12779 13088
|
||||
764001 34422 34675 12747 13054
|
||||
765001 34490 34774 12713 13032
|
||||
766001 34541 34768 12652 13045
|
||||
767001 34572 34765 12665 13005
|
||||
768001 34560 34771 12725 12982
|
||||
769001 34472 34771 12770 12971
|
||||
770001 34389 34771 12783 13005
|
||||
771001 34356 34748 12839 12983
|
||||
772001 34332 34743 12815 13003
|
||||
773001 34301 34751 12885 12948
|
||||
774001 34227 34746 12884 12933
|
||||
775001 34211 34787 12823 12954
|
||||
776001 34153 34864 12778 12990
|
||||
777001 34182 35018 12836 12952
|
||||
778001 34242 35031 12837 12965
|
||||
779001 34297 35044 12829 12976
|
||||
780001 34359 35074 12831 12969
|
||||
781001 34421 35047 12831 12974
|
||||
782001 34457 35128 12807 12997
|
||||
783001 34516 35143 12836 12986
|
||||
784001 34533 35058 12845 12978
|
||||
785001 34600 34978 12826 12986
|
||||
786001 34633 34937 12834 12962
|
||||
787001 34680 34932 12756 12989
|
||||
788001 34777 34861 12780 13001
|
||||
789001 34915 34753 12803 13019
|
||||
790001 34893 34614 12729 13014
|
||||
791001 35006 34507 12745 13059
|
||||
792001 35074 34261 12738 12989
|
||||
793001 35092 34050 12702 12910
|
||||
794001 35062 33729 12670 12813
|
||||
795001 35052 33678 12637 12749
|
||||
796001 35076 33709 12657 12661
|
||||
797001 35167 33357 12665 12547
|
||||
798001 35203 33412 12683 12539
|
||||
799001 35176 33528 12713 12570
|
||||
800001 35139 33673 12669 12652
|
||||
801001 35127 33789 12687 12632
|
||||
802001 35107 33947 12648 12681
|
||||
803001 35145 33950 12677 12735
|
||||
804001 35113 34070 12668 12798
|
||||
805001 35019 34200 12694 12874
|
||||
806001 34989 34294 12745 12830
|
||||
807001 34941 34483 12767 12842
|
||||
808001 34865 34665 12774 12867
|
||||
809001 34867 34809 12791 12867
|
||||
810001 34839 35043 12803 12864
|
||||
811001 34815 35223 12823 12861
|
||||
812001 34814 35365 12880 12848
|
||||
813001 34790 35424 12854 12890
|
||||
814001 34700 35674 12774 12965
|
||||
815001 34668 35832 12754 13023
|
||||
816001 34581 35984 12776 13100
|
||||
817001 34567 36027 12831 13082
|
||||
818001 34488 36004 12831 13089
|
||||
819001 34450 35995 12833 13201
|
||||
820001 34454 36036 12824 13271
|
||||
821001 34450 36113 12826 13327
|
||||
822001 34420 36070 12824 13466
|
||||
823001 34395 36048 12784 13552
|
||||
824001 34334 36164 12801 13578
|
||||
825001 34359 36244 12801 13627
|
||||
826001 34425 36278 12785 13714
|
||||
827001 34399 36352 12829 13714
|
||||
828001 34435 36457 12843 13718
|
||||
829001 34546 36493 12815 13788
|
||||
830001 34481 36514 12806 13833
|
||||
831001 34493 36541 12806 13932
|
||||
832001 34530 36530 12782 14006
|
||||
833001 34639 36545 12766 14086
|
||||
834001 34660 36595 12747 14157
|
||||
835001 34668 36639 12730 14211
|
||||
836001 34664 36692 12715 14256
|
||||
837001 34667 36684 12668 14300
|
||||
838001 34708 36786 12644 14320
|
||||
839001 34749 36803 12622 14405
|
||||
840001 34707 36879 12612 14475
|
||||
841001 34765 36852 12611 14536
|
||||
842001 34749 36877 12615 14576
|
||||
843001 34789 36888 12586 14665
|
||||
844001 34818 36712 12579 14665
|
||||
845001 34971 36625 12582 14682
|
||||
846001 35010 36630 12619 14703
|
||||
847001 34980 36647 12647 14697
|
||||
848001 35067 36643 12664 14803
|
||||
849001 35008 36690 12631 14951
|
||||
850001 35020 36668 12654 15035
|
||||
851001 34978 36664 12671 15107
|
||||
852001 35002 36704 12652 15202
|
||||
853001 35058 36728 12694 15278
|
||||
854001 35020 36732 12711 15337
|
||||
855001 35018 36813 12721 15357
|
||||
856001 35027 36805 12743 15395
|
||||
857001 35005 36897 12772 15461
|
||||
858001 34957 36948 12785 15553
|
||||
859001 35073 36989 12843 15628
|
||||
860001 35063 37034 12877 15682
|
||||
861001 34948 37239 12867 15703
|
||||
862001 34893 37362 12888 15743
|
||||
863001 34856 37403 12913 15781
|
||||
864001 34830 37472 12894 15831
|
||||
865001 34930 37607 12925 15868
|
||||
866001 34923 37666 12937 15913
|
||||
867001 34977 37695 12905 15966
|
||||
868001 34972 37749 12911 15993
|
||||
869001 34913 37992 12935 15985
|
||||
870001 34848 38155 12911 16005
|
||||
871001 34813 38413 12929 16012
|
||||
872001 34811 38613 12972 15987
|
||||
873001 34756 38801 12990 15944
|
||||
874001 34696 39013 13019 15938
|
||||
875001 34552 39180 13067 15936
|
||||
876001 34544 39226 13077 16000
|
||||
877001 34610 39260 13082 16015
|
||||
878001 34694 39207 13056 16030
|
||||
879001 34779 39215 13035 16085
|
||||
880001 34778 39307 13038 16137
|
||||
881001 34785 39307 12996 16212
|
||||
882001 34786 39409 12971 16275
|
||||
883001 34766 39444 12970 16263
|
||||
884001 34762 39548 13010 16254
|
||||
885001 34750 39676 12985 16322
|
||||
886001 34742 39811 13010 16331
|
||||
887001 34766 39874 12946 16386
|
||||
888001 34732 39955 12918 16466
|
||||
889001 34777 39992 12947 16565
|
||||
890001 34880 39984 12983 16620
|
||||
891001 35028 39895 12950 16696
|
||||
892001 35021 39881 12975 16732
|
||||
893001 35027 39886 12981 16782
|
||||
894001 35082 39900 12972 16804
|
||||
895001 35073 39925 12980 16875
|
||||
896001 35147 39917 13009 16887
|
||||
897001 35106 40119 12954 16970
|
||||
898001 35048 40294 12989 16986
|
||||
899001 34991 40318 12992 17036
|
||||
900001 34926 40392 12969 17169
|
||||
901001 34940 40382 12990 17263
|
||||
902001 34833 40464 13002 17290
|
||||
903001 34800 40553 13040 17338
|
||||
904001 34589 40772 13006 17458
|
||||
905001 34480 40881 13052 17504
|
||||
906001 34272 41103 12988 17577
|
||||
907001 33991 41422 12892 17731
|
||||
908001 33703 41733 12803 17898
|
||||
909001 33693 41764 12737 18004
|
||||
910001 33657 41779 12642 18125
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# exclude : borbu1.lst
|
||||
# selector : count
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 7
|
||||
# alphabet : ACGT
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 61316
|
||||
# valid : 61314
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftA RightA LeftC
|
||||
1 3196 2425 788 676
|
||||
1001 3288 2409 804 679
|
||||
2001 3286 2409 800 679
|
||||
3001 3233 2421 784 681
|
||||
4001 3292 2677 795 800
|
||||
5001 3259 2678 784 800
|
||||
6001 3263 2666 774 804
|
||||
7001 3243 2757 773 848
|
||||
8001 3203 2763 762 852
|
||||
9001 3243 2746 771 851
|
||||
10001 3246 2743 771 851
|
||||
11001 3246 2743 772 850
|
||||
12001 3246 2743 768 850
|
||||
13001 3189 2748 753 852
|
||||
14001 3189 2751 753 854
|
||||
15001 3189 2751 753 854
|
||||
16001 3226 2696 753 843
|
||||
17001 3101 2707 698 851
|
||||
18001 3039 2778 684 874
|
||||
19001 2972 2795 670 881
|
||||
20001 2973 2789 671 876
|
||||
21001 3094 2667 727 822
|
||||
22001 3058 2667 720 822
|
||||
23001 3103 2602 735 807
|
||||
24001 3098 2626 733 818
|
||||
25001 3098 2794 733 877
|
||||
26001 3107 2734 736 868
|
||||
27001 3093 2729 730 868
|
||||
28001 3093 2729 730 868
|
||||
29001 3093 2738 730 876
|
||||
30001 3125 2709 741 868
|
||||
31001 3123 2725 740 871
|
||||
32001 3158 2695 751 864
|
||||
33001 3158 2669 753 858
|
||||
34001 3158 2734 753 882
|
||||
35001 3152 2750 753 892
|
||||
36001 3159 2743 757 888
|
||||
37001 3159 2749 757 893
|
||||
38001 3159 2797 757 895
|
||||
39001 3163 2802 759 897
|
||||
40001 3245 2745 781 878
|
||||
41001 3245 2745 781 878
|
||||
42001 3247 2743 784 875
|
||||
43001 3201 2761 778 876
|
||||
44001 3201 2770 778 878
|
||||
45001 3201 2838 778 894
|
||||
46001 3240 2802 780 889
|
||||
47001 3376 2685 840 835
|
||||
48001 3462 2599 865 810
|
||||
49001 3462 2599 865 810
|
||||
50001 3503 2575 875 808
|
||||
51001 3546 2534 887 799
|
||||
52001 3469 2570 875 804
|
||||
53001 3474 2565 879 800
|
||||
54001 3504 2572 891 796
|
||||
55001 3500 2587 891 803
|
||||
56001 3500 2656 891 817
|
||||
57001 3536 2624 902 807
|
||||
58001 3569 2650 915 812
|
||||
59001 3579 2640 918 809
|
||||
60001 3599 2620 932 795
|
||||
61001 3608 2611 935 792
|
||||
62001 3608 2611 935 792
|
||||
63001 3597 2611 933 792
|
||||
64001 3597 2558 943 776
|
||||
65001 3601 2558 943 778
|
||||
66001 3608 2561 944 780
|
||||
67001 3608 2561 944 780
|
||||
68001 3611 2558 945 779
|
||||
69001 3609 2579 945 783
|
||||
70001 3597 2602 944 785
|
||||
71001 3613 2575 944 780
|
||||
72001 3589 2575 938 781
|
||||
73001 3607 2558 942 777
|
||||
74001 3577 2559 935 777
|
||||
75001 3577 2639 935 813
|
||||
76001 3612 2615 940 817
|
||||
77001 3612 2668 940 829
|
||||
78001 3616 2700 942 831
|
||||
79001 3583 2700 939 831
|
||||
80001 3653 2791 943 876
|
||||
81001 3747 2697 955 864
|
||||
82001 3747 2698 955 865
|
||||
83001 3752 2687 957 859
|
||||
84001 3785 2649 966 849
|
||||
85001 3803 2631 974 841
|
||||
86001 3861 2573 1001 814
|
||||
87001 3904 2537 1005 812
|
||||
88001 3905 2538 1005 810
|
||||
89001 3905 2643 1005 848
|
||||
90001 3899 2648 1004 849
|
||||
91001 3899 2671 1004 855
|
||||
92001 3860 2664 1006 848
|
||||
93001 3885 2823 1026 894
|
||||
94001 3889 2819 1028 892
|
||||
95001 3984 2748 1055 867
|
||||
96001 3984 2748 1055 867
|
||||
97001 3984 2748 1055 867
|
||||
98001 3984 2762 1055 868
|
||||
99001 4063 2683 1065 858
|
||||
100001 3975 2683 1035 858
|
||||
101001 3918 2668 1017 856
|
||||
102001 4004 2584 1046 828
|
||||
103001 3958 2573 1039 828
|
||||
104001 3944 2574 1036 833
|
||||
105001 3935 2608 1035 856
|
||||
106001 3952 2659 1035 876
|
||||
107001 3748 2665 998 871
|
||||
108001 3733 2748 995 899
|
||||
109001 3547 2844 939 945
|
||||
110001 3296 2842 874 944
|
||||
111001 2894 2864 775 951
|
||||
112001 2744 2847 759 941
|
||||
113001 2702 2781 755 918
|
||||
114001 2371 2781 671 918
|
||||
115001 2409 2712 679 905
|
||||
116001 2409 2742 679 915
|
||||
117001 2475 2670 720 874
|
||||
118001 2677 2415 800 782
|
||||
119001 2690 2410 808 775
|
||||
120001 2666 2407 804 775
|
||||
121001 2757 2316 848 731
|
||||
122001 2786 2313 860 730
|
||||
123001 2746 2313 851 730
|
||||
124001 2743 2347 851 740
|
||||
125001 2743 2356 850 744
|
||||
126001 2743 2367 850 744
|
||||
127001 2748 2380 852 748
|
||||
128001 2751 2377 854 746
|
||||
129001 2751 2449 854 765
|
||||
130001 2696 2449 843 765
|
||||
131001 2707 2461 851 764
|
||||
132001 2778 2607 874 772
|
||||
133001 2795 2610 881 767
|
||||
134001 2772 2553 866 753
|
||||
135001 2667 2615 822 768
|
||||
136001 2645 2613 817 768
|
||||
137001 2602 2650 807 781
|
||||
138001 2643 2604 827 761
|
||||
139001 2795 2552 879 737
|
||||
140001 2734 2605 868 747
|
||||
141001 2729 2605 868 747
|
||||
142001 2738 2600 876 741
|
||||
143001 2741 2671 879 763
|
||||
144001 2709 2671 868 763
|
||||
145001 2719 2655 871 760
|
||||
146001 2666 2656 857 757
|
||||
147001 2669 2653 858 756
|
||||
148001 2734 2588 882 732
|
||||
149001 2750 2572 892 722
|
||||
150001 2743 2632 888 733
|
||||
151001 2797 2646 895 743
|
||||
152001 2793 2646 893 743
|
||||
153001 2802 2637 897 739
|
||||
154001 2745 2622 878 742
|
||||
155001 2745 2622 878 742
|
||||
156001 2743 2622 875 742
|
||||
157001 2761 2601 876 740
|
||||
158001 2770 2592 878 738
|
||||
159001 2838 2524 894 722
|
||||
160001 2795 2586 889 740
|
||||
161001 2630 2570 817 736
|
||||
162001 2599 2575 810 737
|
||||
163001 2605 2594 811 743
|
||||
164001 2530 2589 796 738
|
||||
165001 2570 2549 804 730
|
||||
166001 2570 2569 804 736
|
||||
167001 2565 2569 800 736
|
||||
168001 2587 2520 803 722
|
||||
169001 2587 2523 803 725
|
||||
170001 2656 2454 817 711
|
||||
171001 2624 2452 807 710
|
||||
172001 2640 2384 809 692
|
||||
173001 2620 2387 795 694
|
||||
174001 2620 2387 795 694
|
||||
175001 2611 2396 792 697
|
||||
176001 2611 2401 792 700
|
||||
177001 2558 2421 776 706
|
||||
178001 2558 2451 778 714
|
||||
179001 2577 2432 782 710
|
||||
180001 2561 2445 780 713
|
||||
181001 2561 2448 780 713
|
||||
182001 2558 2450 779 718
|
||||
183001 2598 2411 785 712
|
||||
184001 2579 2407 784 712
|
||||
185001 2575 2414 780 715
|
||||
186001 2575 2420 781 718
|
||||
187001 2559 2423 777 722
|
||||
188001 2559 2423 777 722
|
||||
189001 2603 2346 808 690
|
||||
190001 2659 2310 827 685
|
||||
191001 2668 2301 829 683
|
||||
192001 2700 2267 831 684
|
||||
193001 2700 2272 831 684
|
||||
194001 2791 2111 876 635
|
||||
195001 2698 2111 865 634
|
||||
196001 2698 2111 865 634
|
||||
197001 2687 2128 859 642
|
||||
198001 2631 2133 841 642
|
||||
199001 2631 2140 841 647
|
||||
200001 2580 2133 816 645
|
||||
201001 2537 2141 812 651
|
||||
202001 2538 2135 810 650
|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
652001 2544 1886 723 518
|
||||
653001 2538 1891 723 519
|
||||
654001 2522 1865 712 513
|
||||
655001 2409 1866 671 515
|
||||
656001 2366 1890 661 524
|
||||
657001 2349 1863 671 510
|
||||
658001 2344 1868 670 513
|
||||
659001 2362 1850 677 506
|
||||
660001 2370 1842 680 503
|
||||
661001 2370 1923 680 519
|
||||
662001 2247 1943 600 531
|
||||
663001 2292 1918 613 524
|
||||
664001 2340 1879 652 482
|
||||
665001 2340 1880 652 483
|
||||
666001 2248 1880 626 483
|
||||
667001 2153 1880 599 483
|
||||
668001 2086 1914 590 491
|
||||
669001 2188 1839 622 468
|
||||
670001 2188 1917 622 484
|
||||
671001 2188 1917 622 484
|
||||
672001 2190 1926 622 487
|
||||
673001 2190 1955 622 491
|
||||
674001 2231 1919 634 480
|
||||
675001 2301 1849 660 454
|
||||
676001 2245 1938 646 512
|
||||
677001 2268 1906 645 510
|
||||
678001 2278 1900 646 509
|
||||
679001 2276 1922 650 510
|
||||
680001 2204 1947 629 518
|
||||
681001 2204 1948 629 518
|
||||
682001 2230 1922 642 505
|
||||
683001 2274 1873 648 499
|
||||
684001 2234 1862 640 498
|
||||
685001 2244 1854 642 500
|
||||
686001 2231 1907 636 516
|
||||
687001 2262 1931 646 522
|
||||
688001 2258 1949 645 526
|
||||
689001 2324 1921 656 536
|
||||
690001 2262 1941 636 537
|
||||
691001 2283 1951 637 544
|
||||
692001 2213 1951 617 544
|
||||
693001 2207 1951 616 544
|
||||
694001 2216 1942 618 542
|
||||
695001 2183 1942 616 546
|
||||
696001 2223 1958 628 549
|
||||
697001 2223 1958 628 549
|
||||
698001 2142 1909 604 538
|
||||
699001 2092 1904 579 545
|
||||
700001 2103 2019 581 598
|
||||
701001 2127 2023 588 604
|
||||
702001 2080 2094 580 616
|
||||
703001 2098 2081 580 620
|
||||
704001 2100 2136 579 632
|
||||
705001 1973 2172 564 639
|
||||
706001 2002 2155 563 637
|
||||
707001 2001 2136 566 634
|
||||
708001 2001 2136 566 634
|
||||
709001 2001 2188 566 642
|
||||
710001 2000 2207 567 646
|
||||
711001 2001 2201 567 646
|
||||
712001 2034 2168 570 643
|
||||
713001 2034 2168 570 643
|
||||
714001 1982 2170 567 644
|
||||
715001 2015 2093 566 630
|
||||
716001 2018 2119 567 634
|
||||
717001 2010 2119 565 634
|
||||
718001 2010 2125 565 634
|
||||
719001 2045 2087 571 626
|
||||
720001 2045 2087 571 626
|
||||
721001 1997 2087 557 626
|
||||
722001 1973 2079 553 626
|
||||
723001 1973 2085 553 626
|
||||
724001 1971 2072 556 621
|
||||
725001 2003 2040 564 613
|
||||
726001 1956 2095 556 623
|
||||
727001 1956 2095 556 623
|
||||
728001 1946 2095 553 623
|
||||
729001 1946 2106 553 628
|
||||
730001 1946 2109 553 628
|
||||
731001 1975 2075 576 602
|
||||
732001 2011 2039 589 589
|
||||
733001 1914 2039 571 589
|
||||
734001 1938 2017 575 585
|
||||
735001 1965 2066 575 597
|
||||
736001 1961 2052 576 593
|
||||
737001 1967 2046 576 593
|
||||
738001 1966 2050 576 592
|
||||
739001 2006 2010 583 585
|
||||
740001 2048 1968 590 578
|
||||
741001 2055 1936 580 575
|
||||
742001 2055 1945 580 575
|
||||
743001 1996 1920 569 573
|
||||
744001 1982 1920 568 573
|
||||
745001 1996 1875 587 547
|
||||
746001 2073 1809 627 509
|
||||
747001 2075 1862 627 515
|
||||
748001 2080 1858 628 514
|
||||
749001 2031 1867 623 515
|
||||
750001 2020 1867 621 515
|
||||
751001 1986 1790 575 482
|
||||
752001 2048 1726 604 453
|
||||
753001 2043 1738 603 454
|
||||
754001 2043 1749 603 459
|
||||
755001 2043 1773 603 465
|
||||
756001 2043 1773 603 465
|
||||
757001 1989 1803 589 472
|
||||
758001 2002 1751 570 464
|
||||
759001 1965 1752 558 464
|
||||
760001 1937 1749 548 464
|
||||
761001 1937 1749 548 464
|
||||
762001 1937 1782 548 467
|
||||
763001 1877 1741 517 463
|
||||
764001 1872 1741 517 463
|
||||
765001 1876 1737 517 463
|
||||
766001 1886 1733 518 466
|
||||
767001 1891 1733 519 466
|
||||
768001 1865 1733 513 466
|
||||
769001 1866 1732 515 464
|
||||
770001 1890 1708 524 455
|
||||
771001 1863 1712 510 458
|
||||
772001 1868 1707 513 455
|
||||
773001 1850 1713 506 456
|
||||
774001 1842 1713 503 456
|
||||
775001 1923 1678 519 445
|
||||
776001 1943 1628 531 428
|
||||
777001 1868 1601 481 422
|
||||
778001 1879 1584 482 421
|
||||
779001 1880 1583 483 420
|
||||
780001 1880 1583 483 420
|
||||
781001 1880 1583 483 420
|
||||
782001 1914 1549 491 412
|
||||
783001 1890 1548 477 418
|
||||
784001 1917 1604 484 437
|
||||
785001 1917 1604 484 437
|
||||
786001 1926 1650 487 441
|
||||
787001 1960 1637 492 439
|
||||
788001 1919 1646 480 440
|
||||
789001 1851 1631 455 437
|
||||
790001 1939 1765 512 425
|
||||
791001 1906 1797 510 434
|
||||
792001 1900 2045 509 504
|
||||
793001 1922 2259 510 559
|
||||
794001 1948 2634 518 652
|
||||
795001 1948 2814 518 682
|
||||
796001 1922 2912 505 706
|
||||
797001 1873 3250 499 793
|
||||
798001 1862 3288 498 804
|
||||
799001 1854 3286 500 800
|
||||
800001 1907 3233 516 784
|
||||
801001 1931 3292 522 795
|
||||
802001 1975 3248 544 773
|
||||
803001 1921 3263 536 774
|
||||
804001 1934 3243 532 773
|
||||
805001 1951 3203 544 762
|
||||
806001 1951 3243 544 771
|
||||
807001 1951 3246 544 771
|
||||
808001 1942 3246 546 768
|
||||
809001 1942 3246 546 768
|
||||
810001 1958 3189 549 753
|
||||
811001 1958 3189 549 753
|
||||
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|
||||
813001 1904 3226 545 753
|
||||
814001 2002 3101 594 698
|
||||
815001 2031 3039 604 684
|
||||
816001 2094 2972 616 670
|
||||
817001 2078 3028 620 686
|
||||
818001 2152 3078 635 724
|
||||
819001 2174 3064 639 722
|
||||
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|
||||
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|
||||
822001 2136 3098 634 733
|
||||
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|
||||
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|
||||
825001 2201 3093 646 730
|
||||
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|
||||
827001 2168 3125 643 741
|
||||
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|
||||
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|
||||
830001 2119 3158 634 753
|
||||
831001 2125 3152 634 753
|
||||
832001 2125 3152 634 753
|
||||
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|
||||
834001 2087 3159 626 757
|
||||
835001 2079 3159 626 757
|
||||
836001 2079 3163 626 759
|
||||
837001 2072 3245 621 781
|
||||
838001 2062 3245 618 781
|
||||
839001 2040 3247 613 784
|
||||
840001 2095 3201 623 778
|
||||
841001 2095 3201 623 778
|
||||
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|
||||
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|
||||
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|
||||
845001 2057 3462 596 865
|
||||
846001 2039 3462 589 865
|
||||
847001 2039 3548 589 887
|
||||
848001 1989 3546 585 887
|
||||
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|
||||
850001 2052 3474 593 879
|
||||
851001 2050 3500 593 891
|
||||
852001 2050 3500 592 891
|
||||
853001 1968 3500 578 891
|
||||
854001 1968 3536 578 902
|
||||
855001 1945 3579 575 918
|
||||
856001 1945 3599 575 932
|
||||
857001 1920 3599 573 932
|
||||
858001 1920 3608 573 935
|
||||
859001 1853 3597 519 933
|
||||
860001 1809 3638 509 944
|
||||
861001 1862 3602 515 943
|
||||
862001 1858 3601 514 943
|
||||
863001 1867 3608 515 944
|
||||
864001 1863 3608 514 944
|
||||
865001 1736 3611 456 945
|
||||
866001 1726 3609 453 945
|
||||
867001 1738 3597 454 944
|
||||
868001 1749 3613 459 944
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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|
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|
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|
||||
883001 1732 3861 464 1001
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
894001 1583 3984 420 1055
|
||||
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|
||||
896001 1525 4063 403 1065
|
||||
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|
||||
898001 1604 3918 437 1017
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
910001 2954 2670 718 746
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# include : <none>
|
||||
# selector : cumul
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 7
|
||||
# alphabet : GC
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 910724
|
||||
# valid : 260406
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos G-C/G+C
|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
173001 -24.3502
|
||||
174001 -24.5364
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
207001 -31.0736
|
||||
208001 -31.2787
|
||||
209001 -31.4832
|
||||
210001 -31.6881
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|
||||
725001 -28.402
|
||||
726001 -28.2188
|
||||
727001 -28.0358
|
||||
728001 -27.8535
|
||||
729001 -27.6692
|
||||
730001 -27.4836
|
||||
731001 -27.2961
|
||||
732001 -27.1084
|
||||
733001 -26.9204
|
||||
734001 -26.7315
|
||||
735001 -26.5418
|
||||
736001 -26.3505
|
||||
737001 -26.1593
|
||||
738001 -25.9675
|
||||
739001 -25.7761
|
||||
740001 -25.5847
|
||||
741001 -25.3932
|
||||
742001 -25.2007
|
||||
743001 -25.0077
|
||||
744001 -24.8141
|
||||
745001 -24.6193
|
||||
746001 -24.4258
|
||||
747001 -24.2323
|
||||
748001 -24.0396
|
||||
749001 -23.8475
|
||||
750001 -23.6552
|
||||
751001 -23.4627
|
||||
752001 -23.2705
|
||||
753001 -23.0783
|
||||
754001 -22.8865
|
||||
755001 -22.6955
|
||||
756001 -22.5053
|
||||
757001 -22.3151
|
||||
758001 -22.1253
|
||||
759001 -21.936
|
||||
760001 -21.7469
|
||||
761001 -21.5594
|
||||
762001 -21.3713
|
||||
763001 -21.183
|
||||
764001 -20.9932
|
||||
765001 -20.802
|
||||
766001 -20.609
|
||||
767001 -20.4147
|
||||
768001 -20.2211
|
||||
769001 -20.0281
|
||||
770001 -19.8365
|
||||
771001 -19.6462
|
||||
772001 -19.4557
|
||||
773001 -19.2661
|
||||
774001 -19.0763
|
||||
775001 -18.886
|
||||
776001 -18.6947
|
||||
777001 -18.5025
|
||||
778001 -18.3099
|
||||
779001 -18.1163
|
||||
780001 -17.9216
|
||||
781001 -17.7263
|
||||
782001 -17.5309
|
||||
783001 -17.3357
|
||||
784001 -17.1411
|
||||
785001 -16.9458
|
||||
786001 -16.7502
|
||||
787001 -16.5527
|
||||
788001 -16.3549
|
||||
789001 -16.1568
|
||||
790001 -15.9583
|
||||
791001 -15.7621
|
||||
792001 -15.5665
|
||||
793001 -15.3698
|
||||
794001 -15.1727
|
||||
795001 -14.9744
|
||||
796001 -14.7746
|
||||
797001 -14.5747
|
||||
798001 -14.3769
|
||||
799001 -14.1819
|
||||
800001 -13.9884
|
||||
801001 -13.7954
|
||||
802001 -13.6022
|
||||
803001 -13.4115
|
||||
804001 -13.2235
|
||||
805001 -13.0389
|
||||
806001 -12.8561
|
||||
807001 -12.6747
|
||||
808001 -12.4939
|
||||
809001 -12.3136
|
||||
810001 -12.1335
|
||||
811001 -11.9546
|
||||
812001 -11.7769
|
||||
813001 -11.6
|
||||
814001 -11.4233
|
||||
815001 -11.2477
|
||||
816001 -11.0751
|
||||
817001 -10.9039
|
||||
818001 -10.7346
|
||||
819001 -10.5681
|
||||
820001 -10.4045
|
||||
821001 -10.2426
|
||||
822001 -10.0839
|
||||
823001 -9.92776
|
||||
824001 -9.7727
|
||||
825001 -9.62004
|
||||
826001 -9.46954
|
||||
827001 -9.32056
|
||||
828001 -9.17234
|
||||
829001 -9.025
|
||||
830001 -8.87994
|
||||
831001 -8.73758
|
||||
832001 -8.59697
|
||||
833001 -8.45889
|
||||
834001 -8.3232
|
||||
835001 -8.19003
|
||||
836001 -8.05847
|
||||
837001 -7.92891
|
||||
838001 -7.7995
|
||||
839001 -7.67252
|
||||
840001 -7.5485
|
||||
841001 -7.42736
|
||||
842001 -7.30856
|
||||
843001 -7.19243
|
||||
844001 -7.07855
|
||||
845001 -6.96517
|
||||
846001 -6.85438
|
||||
847001 -6.74539
|
||||
848001 -6.63987
|
||||
849001 -6.53748
|
||||
850001 -6.43794
|
||||
851001 -6.34213
|
||||
852001 -6.24945
|
||||
853001 -6.16003
|
||||
854001 -6.07333
|
||||
855001 -5.98908
|
||||
856001 -5.90644
|
||||
857001 -5.82624
|
||||
858001 -5.74908
|
||||
859001 -5.6741
|
||||
860001 -5.60186
|
||||
861001 -5.53028
|
||||
862001 -5.45992
|
||||
863001 -5.39177
|
||||
864001 -5.32623
|
||||
865001 -5.26266
|
||||
866001 -5.20101
|
||||
867001 -5.14201
|
||||
868001 -5.08347
|
||||
869001 -5.02581
|
||||
870001 -4.9691
|
||||
871001 -4.91389
|
||||
872001 -4.85983
|
||||
873001 -4.80686
|
||||
874001 -4.75492
|
||||
875001 -4.70474
|
||||
876001 -4.65606
|
||||
877001 -4.60877
|
||||
878001 -4.56261
|
||||
879001 -4.51743
|
||||
880001 -4.47457
|
||||
881001 -4.4337
|
||||
882001 -4.39383
|
||||
883001 -4.35545
|
||||
884001 -4.3178
|
||||
885001 -4.28119
|
||||
886001 -4.24533
|
||||
887001 -4.21051
|
||||
888001 -4.17654
|
||||
889001 -4.14544
|
||||
890001 -4.11702
|
||||
891001 -4.09076
|
||||
892001 -4.06695
|
||||
893001 -4.04528
|
||||
894001 -4.026
|
||||
895001 -4.00913
|
||||
896001 -3.99324
|
||||
897001 -3.9769
|
||||
898001 -3.96318
|
||||
899001 -3.95229
|
||||
900001 -3.94465
|
||||
901001 -3.93979
|
||||
902001 -3.93766
|
||||
903001 -3.93744
|
||||
904001 -3.93928
|
||||
905001 -3.9432
|
||||
906001 -3.94814
|
||||
907001 -3.95509
|
||||
908001 -3.96367
|
||||
909001 -3.97366
|
||||
910001 -3.98531
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# include : borbu1.lst
|
||||
# selector : codon
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 7
|
||||
# alphabet : ACGT
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 284128
|
||||
# valid : 284088
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftTotalCodon RightTotalCodon LeftA0
|
||||
1 35051 36273 10243 11968
|
||||
1001 34984 36282 10218 11960
|
||||
2001 34991 36278 10180 12054
|
||||
3001 35055 36271 10195 12127
|
||||
4001 35031 36073 10190 12174
|
||||
5001 35042 36071 10173 12237
|
||||
6001 35053 36080 10185 12283
|
||||
7001 35074 36008 10142 12359
|
||||
8001 35115 36004 10132 12429
|
||||
9001 35083 36022 10104 12459
|
||||
10001 35081 36024 10077 12516
|
||||
11001 35080 36031 10058 12565
|
||||
12001 35082 36035 10072 12613
|
||||
13001 35136 36026 10088 12692
|
||||
14001 35128 36021 10098 12745
|
||||
15001 35127 36020 10092 12786
|
||||
16001 35105 36059 10049 12838
|
||||
17001 35253 36048 10064 12937
|
||||
18001 35319 35986 10062 13024
|
||||
19001 35382 35974 10075 13126
|
||||
20001 35379 35980 10067 13179
|
||||
21001 35290 36086 10033 13190
|
||||
22001 35340 36074 10045 13245
|
||||
23001 35319 36111 10050 13291
|
||||
24001 35330 36089 10079 13335
|
||||
25001 35328 35956 10055 13384
|
||||
26001 35313 35995 10034 13422
|
||||
27001 35333 35997 10072 13476
|
||||
28001 35340 35989 10050 13546
|
||||
29001 35338 35983 10002 13609
|
||||
30001 35316 36003 10001 13654
|
||||
31001 35317 35994 10022 13698
|
||||
32001 35290 36017 9951 13762
|
||||
33001 35302 36037 9942 13814
|
||||
34001 35301 35987 9906 13872
|
||||
35001 35278 35970 9904 13896
|
||||
36001 35272 35976 9852 13970
|
||||
37001 35272 35969 9786 14061
|
||||
38001 35274 35943 9746 14152
|
||||
39001 35270 35939 9740 14232
|
||||
40001 35214 35985 9712 14280
|
||||
41001 35217 35983 9707 14329
|
||||
42001 35212 35986 9677 14410
|
||||
43001 35259 35974 9676 14497
|
||||
44001 35259 35965 9673 14550
|
||||
45001 35260 35914 9705 14616
|
||||
46001 35247 35936 9677 14668
|
||||
47001 35129 36043 9661 14646
|
||||
48001 35067 36107 9640 14656
|
||||
49001 35068 36107 9654 14693
|
||||
50001 35041 36120 9669 14731
|
||||
51001 35009 36147 9657 14767
|
||||
52001 35080 36127 9687 14824
|
||||
53001 35073 36133 9681 14874
|
||||
54001 35049 36131 9666 14940
|
||||
55001 35052 36117 9616 15028
|
||||
56001 35044 36071 9578 15112
|
||||
57001 35015 36094 9538 15167
|
||||
58001 34991 36073 9514 15227
|
||||
59001 34982 36082 9478 15297
|
||||
60001 34952 36121 9450 15363
|
||||
61001 34947 36130 9439 15437
|
||||
62001 34949 36147 9418 15523
|
||||
63001 34956 36161 9409 15580
|
||||
64001 34968 36197 9394 15640
|
||||
65001 34968 36196 9372 15702
|
||||
66001 34965 36195 9355 15730
|
||||
67001 34961 36195 9363 15747
|
||||
68001 34958 36203 9352 15822
|
||||
69001 34962 36190 9342 15870
|
||||
70001 34969 36171 9335 15910
|
||||
71001 34969 36186 9333 15933
|
||||
72001 35000 36179 9335 16004
|
||||
73001 34985 36191 9305 16073
|
||||
74001 35016 36191 9297 16141
|
||||
75001 35015 36122 9288 16200
|
||||
76001 35007 36116 9282 16249
|
||||
77001 35008 36079 9262 16314
|
||||
78001 35004 36063 9242 16374
|
||||
79001 35029 36064 9225 16447
|
||||
80001 34983 35992 9213 16482
|
||||
81001 34912 36062 9177 16488
|
||||
82001 34914 36074 9169 16529
|
||||
83001 34911 36084 9163 16590
|
||||
84001 34889 36115 9132 16648
|
||||
85001 34874 36128 9103 16724
|
||||
86001 34820 36181 9083 16754
|
||||
87001 34797 36199 9058 16833
|
||||
88001 34796 36199 9026 16895
|
||||
89001 34795 36113 9008 16973
|
||||
90001 34805 36108 8995 17034
|
||||
91001 34805 36092 8972 17099
|
||||
92001 34836 36098 8983 17157
|
||||
93001 34808 35965 8970 17193
|
||||
94001 34806 35969 8993 17228
|
||||
95001 34744 36014 8967 17249
|
||||
96001 34743 36019 8975 17299
|
||||
97001 34732 36015 8971 17359
|
||||
98001 34733 36004 8928 17439
|
||||
99001 34682 36058 8889 17475
|
||||
100001 34787 36059 8898 17565
|
||||
101001 34839 36065 8918 17632
|
||||
102001 34777 36125 8888 17671
|
||||
103001 34828 36133 8894 17718
|
||||
104001 34847 36129 8881 17778
|
||||
105001 34856 36091 8873 17869
|
||||
106001 34865 36036 8884 17956
|
||||
107001 35048 36033 8950 18077
|
||||
108001 35063 35965 8899 18127
|
||||
109001 35256 35893 8968 18225
|
||||
110001 35498 35895 9041 18342
|
||||
111001 35832 35880 9127 18513
|
||||
112001 35945 35891 9171 18584
|
||||
113001 35993 35942 9193 18611
|
||||
114001 36308 35949 9238 18803
|
||||
115001 36281 35999 9203 18815
|
||||
116001 36278 35987 9208 18807
|
||||
117001 36221 36048 9197 18773
|
||||
118001 36072 36232 9148 18698
|
||||
119001 36060 36239 9169 18678
|
||||
120001 36080 36240 9191 18691
|
||||
121001 36007 36312 9199 18629
|
||||
122001 35991 36304 9201 18634
|
||||
123001 36023 36303 9241 18636
|
||||
124001 36024 36277 9248 18640
|
||||
125001 36030 36264 9247 18633
|
||||
126001 36032 36254 9239 18647
|
||||
127001 36025 36248 9231 18640
|
||||
128001 36021 36252 9249 18613
|
||||
129001 36020 36204 9270 18614
|
||||
130001 36059 36203 9278 18649
|
||||
131001 36048 36220 9286 18648
|
||||
132001 35986 36142 9279 18590
|
||||
133001 35973 36145 9284 18573
|
||||
134001 35991 36187 9295 18579
|
||||
135001 36074 36146 9307 18616
|
||||
136001 36085 36149 9311 18656
|
||||
137001 36111 36125 9292 18681
|
||||
138001 36076 36162 9252 18693
|
||||
139001 35953 36221 9226 18645
|
||||
140001 35995 36182 9220 18682
|
||||
141001 35998 36181 9180 18713
|
||||
142001 35982 36185 9196 18681
|
||||
143001 35980 36120 9212 18659
|
||||
144001 36003 36121 9237 18675
|
||||
145001 35997 36130 9227 18682
|
||||
146001 36039 36130 9251 18680
|
||||
147001 36038 36130 9215 18713
|
||||
148001 35986 36185 9216 18673
|
||||
149001 35970 36201 9211 18663
|
||||
150001 35977 36158 9225 18672
|
||||
151001 35943 36142 9243 18633
|
||||
152001 35948 36141 9252 18592
|
||||
153001 35939 36157 9263 18537
|
||||
154001 35986 36153 9277 18560
|
||||
155001 35983 36153 9265 18568
|
||||
156001 35986 36155 9258 18582
|
||||
157001 35974 36169 9260 18547
|
||||
158001 35964 36179 9238 18533
|
||||
159001 35915 36251 9194 18518
|
||||
160001 35939 36195 9202 18519
|
||||
161001 36082 36206 9249 18591
|
||||
162001 36107 36201 9239 18643
|
||||
163001 36102 36186 9223 18670
|
||||
164001 36153 36186 9248 18694
|
||||
165001 36127 36222 9247 18697
|
||||
166001 36127 36209 9228 18719
|
||||
167001 36134 36209 9239 18751
|
||||
168001 36117 36246 9248 18737
|
||||
169001 36118 36242 9268 18703
|
||||
170001 36070 36288 9258 18684
|
||||
171001 36094 36292 9274 18670
|
||||
172001 36082 36345 9266 18663
|
||||
173001 36103 36343 9261 18698
|
||||
174001 36120 36325 9275 18695
|
||||
175001 36131 36312 9261 18710
|
||||
176001 36147 36294 9267 18722
|
||||
177001 36197 36267 9259 18772
|
||||
178001 36196 36243 9264 18779
|
||||
179001 36184 36255 9253 18772
|
||||
180001 36195 36248 9266 18804
|
||||
181001 36195 36246 9230 18828
|
||||
182001 36202 36237 9225 18823
|
||||
183001 36176 36263 9203 18843
|
||||
184001 36182 36274 9196 18854
|
||||
185001 36186 36267 9203 18864
|
||||
186001 36179 36264 9192 18862
|
||||
187001 36190 36259 9203 18842
|
||||
188001 36192 36256 9181 18855
|
||||
189001 36144 36323 9156 18850
|
||||
190001 36088 36343 9167 18792
|
||||
191001 36079 36350 9160 18790
|
||||
192001 36063 36376 9144 18790
|
||||
193001 36061 36374 9126 18830
|
||||
194001 35992 36485 9100 18807
|
||||
195001 36060 36484 9095 18862
|
||||
196001 36074 36470 9107 18872
|
||||
197001 36084 36459 9112 18874
|
||||
198001 36128 36453 9124 18886
|
||||
199001 36128 36449 9153 18849
|
||||
200001 36176 36454 9170 18859
|
||||
201001 36199 36449 9166 18870
|
||||
202001 36199 36457 9167 18893
|
||||
203001 36111 36547 9138 18841
|
||||
204001 36108 36538 9088 18856
|
||||
205001 36098 36516 9099 18832
|
||||
206001 36099 36518 9076 18836
|
||||
207001 35966 36664 9047 18757
|
||||
208001 36010 36664 9065 18773
|
||||
209001 36015 36679 9073 18799
|
||||
210001 36020 36675 9078 18779
|
||||
211001 36015 36677 9091 18758
|
||||
212001 36005 36685 9093 18735
|
||||
213001 36059 36648 9125 18750
|
||||
214001 36059 36621 9104 18735
|
||||
215001 36065 36558 9105 18715
|
||||
216001 36125 36520 9113 18762
|
||||
217001 36138 36503 9144 18772
|
||||
218001 36129 36510 9148 18785
|
||||
219001 36092 36547 9138 18754
|
||||
220001 36036 36587 9119 18715
|
||||
221001 36033 36508 9099 18701
|
||||
222001 35912 36604 9070 18637
|
||||
223001 35893 36627 9020 18649
|
||||
224001 35893 36628 9000 18664
|
||||
225001 35881 36594 8965 18676
|
||||
226001 35891 36595 8954 18683
|
||||
227001 35941 36527 8950 18720
|
||||
228001 35949 36515 9013 18688
|
||||
229001 36010 36508 9029 18734
|
||||
230001 35988 36529 9038 18689
|
||||
231001 36101 36525 9060 18745
|
||||
232001 36231 36530 9106 18806
|
||||
233001 36239 36512 9106 18818
|
||||
234001 36240 36489 9110 18805
|
||||
235001 36317 36492 9147 18829
|
||||
236001 36304 36528 9143 18818
|
||||
237001 36303 36528 9107 18851
|
||||
238001 36271 36566 9095 18838
|
||||
239001 36263 36569 9097 18848
|
||||
240001 36253 36574 9096 18843
|
||||
241001 36248 36581 9081 18836
|
||||
242001 36252 36521 9039 18885
|
||||
243001 36203 36569 9024 18856
|
||||
244001 36231 36518 9040 18839
|
||||
245001 36235 36527 9050 18848
|
||||
246001 36143 36645 9016 18822
|
||||
247001 36145 36659 8999 18809
|
||||
248001 36187 36625 8999 18816
|
||||
249001 36145 36667 8999 18778
|
||||
250001 36150 36666 8998 18763
|
||||
251001 36124 36688 9024 18747
|
||||
252001 36186 36693 9034 18775
|
||||
253001 36221 36759 9051 18805
|
||||
254001 36181 36796 9064 18759
|
||||
255001 36177 36780 9098 18719
|
||||
256001 36186 36777 9106 18727
|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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686001 35789 36187 9883 12292
|
||||
687001 35756 36162 9847 12293
|
||||
688001 35758 36167 9852 12298
|
||||
689001 35695 36184 9815 12295
|
||||
690001 35758 36163 9818 12289
|
||||
691001 35743 36148 9841 12275
|
||||
692001 35814 36151 9842 12301
|
||||
693001 35825 36145 9830 12324
|
||||
694001 35817 36155 9861 12324
|
||||
695001 35839 36152 9896 12329
|
||||
696001 35805 36137 9889 12311
|
||||
697001 35804 36146 9909 12293
|
||||
698001 35884 36191 9941 12321
|
||||
699001 35937 36198 9954 12346
|
||||
700001 35927 36059 9932 12344
|
||||
701001 35904 36054 9932 12331
|
||||
702001 35952 35992 9934 12342
|
||||
703001 35938 36002 9952 12340
|
||||
704001 35954 35933 9983 12328
|
||||
705001 36071 35890 10026 12372
|
||||
706001 36056 35894 10028 12378
|
||||
707001 36063 35903 10035 12373
|
||||
708001 36063 35905 10032 12429
|
||||
709001 36063 35879 10021 12433
|
||||
710001 36065 35858 10030 12417
|
||||
711001 36064 35862 10032 12406
|
||||
712001 36037 35890 10037 12392
|
||||
713001 36037 35889 10044 12385
|
||||
714001 36079 35885 10050 12399
|
||||
715001 36053 35962 10042 12415
|
||||
716001 36051 35929 10008 12457
|
||||
717001 36060 35930 9998 12467
|
||||
718001 36072 35941 9991 12476
|
||||
719001 36023 35994 9956 12462
|
||||
720001 36024 35993 9943 12477
|
||||
721001 36074 35992 9930 12496
|
||||
722001 36095 36000 9945 12496
|
||||
723001 36091 35993 9924 12503
|
||||
724001 36088 36009 9931 12493
|
||||
725001 36057 36040 9949 12454
|
||||
726001 36115 35974 9956 12488
|
||||
727001 36128 35962 9975 12495
|
||||
728001 36143 35956 9989 12520
|
||||
729001 36147 35936 9994 12512
|
||||
730001 36141 35929 9977 12502
|
||||
731001 36106 35970 9944 12500
|
||||
732001 36064 36012 9944 12480
|
||||
733001 36154 36011 9949 12524
|
||||
734001 36125 36038 9918 12521
|
||||
735001 36103 35994 9909 12511
|
||||
736001 36102 36011 9886 12506
|
||||
737001 36097 36015 9842 12535
|
||||
738001 36099 36013 9824 12552
|
||||
739001 36067 36053 9784 12551
|
||||
740001 36020 36101 9785 12559
|
||||
741001 36019 36129 9789 12562
|
||||
742001 36028 36111 9809 12565
|
||||
743001 36079 36139 9835 12589
|
||||
744001 36091 36141 9876 12584
|
||||
745001 36060 36194 9907 12551
|
||||
746001 35961 36286 9870 12513
|
||||
747001 35960 36238 9872 12527
|
||||
748001 35956 36239 9875 12520
|
||||
749001 35993 36235 9887 12537
|
||||
750001 36006 36239 9853 12559
|
||||
751001 36076 36312 9868 12603
|
||||
752001 36015 36372 9872 12577
|
||||
753001 36031 36358 9868 12586
|
||||
754001 36009 36342 9877 12568
|
||||
755001 36010 36318 9917 12548
|
||||
756001 36009 36321 9928 12563
|
||||
757001 36072 36272 9947 12600
|
||||
758001 36062 36327 9959 12577
|
||||
759001 36100 36327 9966 12563
|
||||
760001 36127 36328 9971 12564
|
||||
761001 36132 36323 9987 12569
|
||||
762001 36140 36292 10029 12542
|
||||
763001 36203 36328 10050 12555
|
||||
764001 36208 36326 10048 12551
|
||||
765001 36205 36329 10016 12547
|
||||
766001 36197 36331 10018 12518
|
||||
767001 36190 36331 9986 12511
|
||||
768001 36221 36334 9982 12534
|
||||
769001 36204 36337 9950 12524
|
||||
770001 36179 36362 9935 12528
|
||||
771001 36211 36358 9942 12547
|
||||
772001 36204 36365 9952 12543
|
||||
773001 36233 36357 9958 12528
|
||||
774001 36240 36358 9984 12523
|
||||
775001 36153 36408 9961 12516
|
||||
776001 36111 36475 9951 12492
|
||||
777001 36195 36495 9988 12494
|
||||
778001 36192 36505 9982 12490
|
||||
779001 36189 36506 10007 12476
|
||||
780001 36190 36521 9996 12451
|
||||
781001 36190 36521 10006 12435
|
||||
782001 36154 36556 9981 12421
|
||||
783001 36190 36540 9991 12447
|
||||
784001 36169 36488 9960 12442
|
||||
785001 36168 36489 9956 12433
|
||||
786001 36158 36441 9943 12414
|
||||
787001 36123 36455 9963 12394
|
||||
788001 36166 36446 9956 12425
|
||||
789001 36236 36459 9949 12470
|
||||
790001 36143 36357 9937 12443
|
||||
791001 36174 36328 9927 12490
|
||||
792001 36184 36082 9915 12529
|
||||
793001 36164 35888 9930 12487
|
||||
794001 36141 35579 9963 12466
|
||||
795001 36154 35426 9975 12478
|
||||
796001 36180 35343 9985 12485
|
||||
797001 36228 35016 9970 12520
|
||||
798001 36245 34984 10007 12537
|
||||
799001 36252 34992 10030 12534
|
||||
800001 36187 35055 10025 12519
|
||||
801001 36164 35030 10020 12490
|
||||
802001 36133 35060 10013 12462
|
||||
803001 36184 35052 10017 12489
|
||||
804001 36170 35075 10073 12486
|
||||
805001 36148 35115 10076 12461
|
||||
806001 36150 35082 10096 12481
|
||||
807001 36146 35079 10115 12468
|
||||
808001 36151 35083 10117 12460
|
||||
809001 36152 35081 10090 12482
|
||||
810001 36138 35136 10082 12483
|
||||
811001 36147 35127 10054 12498
|
||||
812001 36191 35127 10073 12513
|
||||
813001 36198 35105 10086 12510
|
||||
814001 36076 35254 10063 12475
|
||||
815001 36049 35319 10042 12472
|
||||
816001 35992 35382 10014 12464
|
||||
817001 36004 35341 10004 12476
|
||||
818001 35918 35316 9971 12449
|
||||
819001 35889 35337 9938 12433
|
||||
820001 35894 35320 9932 12434
|
||||
821001 35904 35329 9928 12427
|
||||
822001 35905 35329 9940 12392
|
||||
823001 35878 35313 9954 12377
|
||||
824001 35858 35333 9910 12380
|
||||
825001 35862 35340 9929 12392
|
||||
826001 35890 35339 9950 12405
|
||||
827001 35889 35316 9930 12400
|
||||
828001 35884 35313 9917 12397
|
||||
829001 35964 35281 9976 12412
|
||||
830001 35929 35303 10003 12385
|
||||
831001 35925 35306 10020 12393
|
||||
832001 35941 35278 10053 12399
|
||||
833001 35993 35271 10116 12410
|
||||
834001 35993 35273 10157 12386
|
||||
835001 36000 35273 10204 12377
|
||||
836001 35999 35270 10212 12380
|
||||
837001 36009 35213 10245 12369
|
||||
838001 36018 35216 10260 12361
|
||||
839001 36040 35211 10270 12366
|
||||
840001 35974 35259 10258 12346
|
||||
841001 35961 35259 10268 12339
|
||||
842001 35955 35259 10275 12315
|
||||
843001 35932 35247 10254 12328
|
||||
844001 35929 35104 10246 12309
|
||||
845001 35987 35067 10276 12337
|
||||
846001 36011 35068 10249 12355
|
||||
847001 36011 35008 10237 12351
|
||||
848001 36064 35010 10250 12379
|
||||
849001 35994 35080 10204 12383
|
||||
850001 36011 35074 10228 12378
|
||||
851001 36014 35051 10229 12361
|
||||
852001 36013 35051 10268 12351
|
||||
853001 36100 35044 10320 12362
|
||||
854001 36102 35015 10339 12340
|
||||
855001 36120 34982 10352 12340
|
||||
856001 36119 34952 10358 12319
|
||||
857001 36140 34953 10365 12299
|
||||
858001 36140 34948 10358 12291
|
||||
859001 36239 34957 10387 12324
|
||||
860001 36286 34928 10404 12357
|
||||
861001 36238 34966 10397 12326
|
||||
862001 36241 34968 10391 12331
|
||||
863001 36235 34965 10404 12323
|
||||
864001 36241 34961 10437 12313
|
||||
865001 36365 34959 10499 12338
|
||||
866001 36365 34960 10486 12329
|
||||
867001 36357 34969 10524 12340
|
||||
868001 36343 34969 10504 12343
|
||||
869001 36318 35000 10478 12343
|
||||
870001 36321 34985 10499 12343
|
||||
871001 36272 35016 10497 12322
|
||||
872001 36326 34993 10526 12337
|
||||
873001 36327 35007 10498 12365
|
||||
874001 36328 35008 10504 12371
|
||||
875001 36324 35004 10512 12341
|
||||
876001 36294 35031 10496 12332
|
||||
877001 36327 34982 10511 12335
|
||||
878001 36326 34913 10531 12334
|
||||
879001 36329 34914 10525 12371
|
||||
880001 36331 34911 10514 12384
|
||||
881001 36331 34876 10515 12390
|
||||
882001 36337 34873 10537 12383
|
||||
883001 36337 34821 10561 12384
|
||||
884001 36363 34796 10575 12389
|
||||
885001 36362 34796 10578 12376
|
||||
886001 36365 34795 10572 12357
|
||||
887001 36358 34805 10618 12367
|
||||
888001 36358 34805 10624 12351
|
||||
889001 36407 34835 10650 12372
|
||||
890001 36474 34808 10646 12412
|
||||
891001 36495 34779 10629 12463
|
||||
892001 36505 34743 10621 12464
|
||||
893001 36505 34744 10589 12483
|
||||
894001 36521 34732 10587 12523
|
||||
895001 36521 34733 10593 12525
|
||||
896001 36582 34681 10631 12528
|
||||
897001 36487 34826 10609 12484
|
||||
898001 36489 34838 10609 12488
|
||||
899001 36500 34777 10613 12491
|
||||
900001 36442 34822 10579 12496
|
||||
901001 36455 34846 10563 12518
|
||||
902001 36446 34856 10585 12482
|
||||
903001 36512 34865 10601 12487
|
||||
904001 36328 35062 10532 12428
|
||||
905001 36294 35096 10577 12403
|
||||
906001 36098 35249 10534 12314
|
||||
907001 35835 35537 10454 12245
|
||||
908001 35548 35847 10356 12138
|
||||
909001 35426 35946 10320 12108
|
||||
910001 35290 36032 10287 12059
|
||||
@@ -0,0 +1,927 @@
|
||||
# input : borbu1.fst
|
||||
# include : borbu1.lst
|
||||
# selector : genes
|
||||
# mixer : basic
|
||||
# distance : chi
|
||||
# phase : 7
|
||||
# alphabet : DR
|
||||
# excluded : X
|
||||
# seqname : borbu1
|
||||
# seqlength : 910724
|
||||
# unmasked : 850
|
||||
# valid : 850
|
||||
# window : 227680
|
||||
# step : 1000
|
||||
#
|
||||
# pos LeftDirect RightDirect LeftReverse
|
||||
1 63 42 36 73
|
||||
1001 64 42 35 74
|
||||
2001 64 42 35 73
|
||||
3001 64 42 34 74
|
||||
4001 64 41 34 73
|
||||
5001 63 41 34 74
|
||||
6001 63 41 33 76
|
||||
7001 62 41 33 76
|
||||
8001 62 41 33 77
|
||||
9001 63 40 33 77
|
||||
10001 64 39 33 77
|
||||
11001 66 37 32 79
|
||||
12001 67 36 30 80
|
||||
13001 69 34 29 81
|
||||
14001 69 34 28 82
|
||||
15001 69 34 27 82
|
||||
16001 70 33 28 80
|
||||
17001 70 33 27 81
|
||||
18001 70 34 27 81
|
||||
19001 70 34 27 80
|
||||
20001 70 34 27 79
|
||||
21001 69 35 26 80
|
||||
22001 67 35 27 79
|
||||
23001 65 34 29 77
|
||||
24001 64 34 29 78
|
||||
25001 63 34 30 79
|
||||
26001 62 33 31 78
|
||||
27001 61 32 31 78
|
||||
28001 60 32 32 77
|
||||
29001 59 32 33 77
|
||||
30001 60 31 34 77
|
||||
31001 59 32 34 78
|
||||
32001 60 31 34 79
|
||||
33001 59 31 35 79
|
||||
34001 59 31 35 80
|
||||
35001 58 32 34 80
|
||||
36001 58 32 35 79
|
||||
37001 58 32 36 79
|
||||
38001 58 33 36 80
|
||||
39001 58 34 37 79
|
||||
40001 58 33 38 79
|
||||
41001 59 32 38 79
|
||||
42001 58 32 39 78
|
||||
43001 57 33 41 77
|
||||
44001 57 34 41 77
|
||||
45001 56 36 41 77
|
||||
46001 56 36 42 76
|
||||
47001 55 37 44 74
|
||||
48001 56 35 45 73
|
||||
49001 56 35 45 73
|
||||
50001 57 35 46 73
|
||||
51001 55 35 47 73
|
||||
52001 53 35 48 72
|
||||
53001 53 35 49 72
|
||||
54001 53 35 50 72
|
||||
55001 52 35 50 72
|
||||
56001 51 36 51 72
|
||||
57001 50 36 53 70
|
||||
58001 50 36 54 70
|
||||
59001 50 36 54 70
|
||||
60001 49 36 55 70
|
||||
61001 48 36 57 69
|
||||
62001 48 36 58 69
|
||||
63001 48 36 58 70
|
||||
64001 47 35 58 70
|
||||
65001 47 34 58 71
|
||||
66001 48 32 58 73
|
||||
67001 47 32 58 73
|
||||
68001 48 31 58 74
|
||||
69001 47 31 58 75
|
||||
70001 45 32 58 75
|
||||
71001 45 31 58 75
|
||||
72001 45 31 57 75
|
||||
73001 46 31 56 75
|
||||
74001 47 31 55 76
|
||||
75001 48 30 55 78
|
||||
76001 50 28 54 80
|
||||
77001 51 30 54 81
|
||||
78001 51 30 54 81
|
||||
79001 50 30 53 82
|
||||
80001 50 30 55 81
|
||||
81001 51 29 55 81
|
||||
82001 52 30 55 81
|
||||
83001 51 30 55 81
|
||||
84001 51 31 56 80
|
||||
85001 51 31 55 80
|
||||
86001 51 31 56 79
|
||||
87001 51 31 57 78
|
||||
88001 51 31 57 78
|
||||
89001 51 31 57 79
|
||||
90001 51 32 58 77
|
||||
91001 51 33 58 77
|
||||
92001 50 34 58 76
|
||||
93001 50 35 59 75
|
||||
94001 49 35 60 74
|
||||
95001 49 36 62 73
|
||||
96001 49 37 62 73
|
||||
97001 48 37 63 72
|
||||
98001 48 38 64 71
|
||||
99001 49 38 65 70
|
||||
100001 49 38 65 70
|
||||
101001 50 37 64 70
|
||||
102001 50 38 65 69
|
||||
103001 49 38 65 68
|
||||
104001 48 39 66 67
|
||||
105001 47 39 66 67
|
||||
106001 47 40 68 67
|
||||
107001 47 41 69 66
|
||||
108001 47 41 69 66
|
||||
109001 46 41 68 65
|
||||
110001 44 42 68 65
|
||||
111001 44 42 68 66
|
||||
112001 42 42 71 63
|
||||
113001 42 42 73 62
|
||||
114001 41 42 73 63
|
||||
115001 42 41 74 63
|
||||
116001 42 42 73 65
|
||||
117001 42 42 73 64
|
||||
118001 41 43 73 65
|
||||
119001 41 44 75 63
|
||||
120001 41 44 76 62
|
||||
121001 41 44 76 61
|
||||
122001 41 44 77 60
|
||||
123001 40 44 77 59
|
||||
124001 39 44 77 61
|
||||
125001 37 44 79 61
|
||||
126001 35 44 80 61
|
||||
127001 34 44 81 61
|
||||
128001 34 44 82 60
|
||||
129001 34 45 82 61
|
||||
130001 33 45 80 61
|
||||
131001 33 45 81 61
|
||||
132001 34 45 81 61
|
||||
133001 34 46 80 61
|
||||
134001 35 45 80 60
|
||||
135001 35 47 79 60
|
||||
136001 35 47 78 60
|
||||
137001 34 47 77 61
|
||||
138001 34 47 78 61
|
||||
139001 34 48 79 60
|
||||
140001 33 49 78 60
|
||||
141001 32 49 78 60
|
||||
142001 32 51 78 59
|
||||
143001 32 52 78 58
|
||||
144001 31 52 77 58
|
||||
145001 31 51 78 57
|
||||
146001 31 52 78 56
|
||||
147001 31 52 79 55
|
||||
148001 31 52 79 54
|
||||
149001 32 51 80 53
|
||||
150001 32 51 79 54
|
||||
151001 33 51 80 52
|
||||
152001 33 51 79 52
|
||||
153001 34 51 79 52
|
||||
154001 33 52 79 51
|
||||
155001 32 52 79 51
|
||||
156001 32 52 78 52
|
||||
157001 33 51 77 52
|
||||
158001 34 50 77 52
|
||||
159001 36 48 77 53
|
||||
160001 36 47 76 54
|
||||
161001 37 47 73 54
|
||||
162001 35 47 73 54
|
||||
163001 36 47 74 54
|
||||
164001 35 47 73 54
|
||||
165001 35 47 73 54
|
||||
166001 35 47 73 55
|
||||
167001 35 47 72 55
|
||||
168001 35 47 72 56
|
||||
169001 35 47 72 57
|
||||
170001 36 46 72 56
|
||||
171001 36 46 70 57
|
||||
172001 36 45 70 56
|
||||
173001 36 45 69 57
|
||||
174001 36 45 69 57
|
||||
175001 36 45 69 58
|
||||
176001 36 45 69 59
|
||||
177001 35 45 70 58
|
||||
178001 34 45 71 59
|
||||
179001 34 45 72 59
|
||||
180001 32 45 73 60
|
||||
181001 32 45 73 61
|
||||
182001 31 45 74 61
|
||||
183001 32 44 75 61
|
||||
184001 32 43 75 63
|
||||
185001 31 43 75 64
|
||||
186001 31 42 75 65
|
||||
187001 32 40 75 66
|
||||
188001 31 40 76 65
|
||||
189001 29 40 78 65
|
||||
190001 29 39 81 64
|
||||
191001 30 37 81 64
|
||||
192001 30 37 81 66
|
||||
193001 30 37 81 66
|
||||
194001 30 36 81 66
|
||||
195001 30 35 81 67
|
||||
196001 30 34 81 68
|
||||
197001 30 34 81 69
|
||||
198001 31 33 80 70
|
||||
199001 31 33 80 71
|
||||
200001 31 33 79 71
|
||||
201001 31 33 78 73
|
||||
202001 31 33 78 73
|
||||
203001 32 32 79 73
|
||||
204001 32 32 77 74
|
||||
205001 33 31 76 76
|
||||
206001 34 30 76 78
|
||||
207001 35 30 75 79
|
||||
208001 35 31 73 79
|
||||
209001 36 30 73 78
|
||||
210001 37 29 73 80
|
||||
211001 37 29 72 80
|
||||
212001 38 28 71 81
|
||||
213001 38 27 70 84
|
||||
214001 38 27 70 85
|
||||
215001 37 28 70 85
|
||||
216001 38 28 69 85
|
||||
217001 38 28 68 86
|
||||
218001 39 27 67 86
|
||||
219001 39 27 67 86
|
||||
220001 40 26 67 85
|
||||
221001 41 25 66 86
|
||||
222001 41 26 66 86
|
||||
223001 41 26 65 86
|
||||
224001 42 25 65 86
|
||||
225001 42 26 65 85
|
||||
226001 42 26 63 85
|
||||
227001 42 27 62 85
|
||||
228001 42 28 63 84
|
||||
229001 41 29 64 82
|
||||
230001 42 29 65 81
|
||||
231001 42 29 64 81
|
||||
232001 43 29 65 81
|
||||
233001 44 28 63 81
|
||||
234001 44 28 62 83
|
||||
235001 44 28 60 84
|
||||
236001 44 28 60 84
|
||||
237001 44 28 59 84
|
||||
238001 44 28 61 83
|
||||
239001 44 28 61 82
|
||||
240001 44 28 61 82
|
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||||
783001 76 60 31 38
|
||||
784001 77 59 32 38
|
||||
785001 77 59 32 38
|
||||
786001 78 59 31 39
|
||||
787001 79 59 31 39
|
||||
788001 78 60 30 39
|
||||
789001 77 60 30 39
|
||||
790001 78 59 30 39
|
||||
791001 77 59 31 38
|
||||
792001 77 61 32 38
|
||||
793001 78 62 32 38
|
||||
794001 79 61 31 38
|
||||
795001 79 63 31 37
|
||||
796001 79 63 30 37
|
||||
797001 78 64 30 36
|
||||
798001 77 64 31 35
|
||||
799001 77 64 32 35
|
||||
800001 77 64 32 34
|
||||
801001 79 63 32 34
|
||||
802001 79 63 32 34
|
||||
803001 78 63 32 33
|
||||
804001 78 62 33 33
|
||||
805001 76 62 34 33
|
||||
806001 76 63 35 33
|
||||
807001 75 64 36 32
|
||||
808001 74 66 37 31
|
||||
809001 74 67 38 30
|
||||
810001 73 69 38 29
|
||||
811001 73 69 39 28
|
||||
812001 72 69 39 27
|
||||
813001 72 70 40 28
|
||||
814001 72 70 40 27
|
||||
815001 71 70 40 27
|
||||
816001 69 70 41 27
|
||||
817001 68 70 41 27
|
||||
818001 68 69 42 27
|
||||
819001 70 66 42 28
|
||||
820001 71 65 42 29
|
||||
821001 71 64 42 29
|
||||
822001 72 63 42 30
|
||||
823001 74 62 42 31
|
||||
824001 75 61 42 31
|
||||
825001 75 60 42 32
|
||||
826001 75 59 42 33
|
||||
827001 75 60 41 34
|
||||
828001 76 60 39 34
|
||||
829001 75 60 38 35
|
||||
830001 76 59 38 35
|
||||
831001 75 59 39 35
|
||||
832001 75 58 40 34
|
||||
833001 74 58 40 35
|
||||
834001 74 58 40 36
|
||||
835001 73 58 40 36
|
||||
836001 73 58 40 37
|
||||
837001 74 58 40 38
|
||||
838001 74 59 39 38
|
||||
839001 74 58 39 39
|
||||
840001 74 57 39 41
|
||||
841001 73 57 39 41
|
||||
842001 73 56 39 41
|
||||
843001 73 56 39 42
|
||||
844001 73 55 39 45
|
||||
845001 73 56 38 45
|
||||
846001 72 56 38 45
|
||||
847001 72 57 38 46
|
||||
848001 72 55 38 47
|
||||
849001 74 53 38 48
|
||||
850001 73 53 38 49
|
||||
851001 72 52 38 50
|
||||
852001 70 52 38 50
|
||||
853001 68 51 38 51
|
||||
854001 68 50 38 53
|
||||
855001 66 50 38 54
|
||||
856001 67 49 38 55
|
||||
857001 66 49 37 56
|
||||
858001 67 48 37 57
|
||||
859001 66 48 37 58
|
||||
860001 65 48 37 59
|
||||
861001 66 48 38 58
|
||||
862001 65 47 38 58
|
||||
863001 66 48 38 58
|
||||
864001 66 47 38 58
|
||||
865001 66 48 38 58
|
||||
866001 66 46 38 58
|
||||
867001 68 45 38 58
|
||||
868001 67 45 38 58
|
||||
869001 67 45 39 57
|
||||
870001 67 46 40 56
|
||||
871001 66 47 41 55
|
||||
872001 65 49 41 55
|
||||
873001 65 50 42 54
|
||||
874001 64 51 42 54
|
||||
875001 63 51 42 54
|
||||
876001 64 50 42 54
|
||||
877001 64 50 42 55
|
||||
878001 63 51 42 55
|
||||
879001 62 52 42 55
|
||||
880001 62 51 42 55
|
||||
881001 62 51 42 56
|
||||
882001 62 51 42 55
|
||||
883001 62 51 42 56
|
||||
884001 62 51 41 57
|
||||
885001 62 51 41 57
|
||||
886001 62 51 40 57
|
||||
887001 62 51 41 58
|
||||
888001 62 51 41 59
|
||||
889001 62 50 41 58
|
||||
890001 62 50 41 59
|
||||
891001 62 49 40 61
|
||||
892001 60 49 40 62
|
||||
893001 59 49 40 62
|
||||
894001 60 48 40 63
|
||||
895001 60 48 40 64
|
||||
896001 60 49 39 65
|
||||
897001 60 49 38 65
|
||||
898001 59 50 38 64
|
||||
899001 58 50 38 65
|
||||
900001 59 49 39 65
|
||||
901001 59 48 39 66
|
||||
902001 60 47 39 66
|
||||
903001 60 47 39 68
|
||||
904001 59 47 39 69
|
||||
905001 59 47 39 68
|
||||
906001 62 45 39 68
|
||||
907001 62 44 38 68
|
||||
908001 62 43 38 69
|
||||
909001 63 42 37 71
|
||||
910001 63 42 37 73
|
||||
Executable
+52
@@ -0,0 +1,52 @@
|
||||
#!/bin/csh -f
|
||||
|
||||
set path = (. ../src $path); rehash
|
||||
|
||||
set out = "tst"
|
||||
#set out = "ref" # for recording
|
||||
|
||||
echo borbu1.0.$out
|
||||
kimono borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.0.$out
|
||||
diff borbu1.0.$out ref/borbu1.0.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo borbu1.1.$out
|
||||
kimono -i borbu1.lst -p 1 borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.1.$out
|
||||
diff borbu1.1.$out ref/borbu1.1.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo borbu1.2.$out
|
||||
kimono -i borbu1.lst -p 2 borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.2.$out
|
||||
diff borbu1.2.$out ref/borbu1.2.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo borbu1.3.$out
|
||||
kimono -i borbu1.lst -p 123 borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.3.$out
|
||||
diff borbu1.3.$out ref/borbu1.3.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo borbu1.4.$out
|
||||
kimono -x borbu1.lst borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.4.$out
|
||||
diff borbu1.4.$out ref/borbu1.4.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo borbu1.5.$out
|
||||
kimono -a gc -c cumul borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.5.$out
|
||||
diff borbu1.5.$out ref/borbu1.5.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo borbu1.6.$out
|
||||
kimono -c codon -e 0 -i borbu1.lst borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.6.$out
|
||||
diff borbu1.6.$out ref/borbu1.6.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo borbu1.7.$out
|
||||
kimono -c genes -i borbu1.lst borbu1.fst | awk '{print $1, $2, $3, $4, $5}' > borbu1.7.$out
|
||||
diff borbu1.7.$out ref/borbu1.7.ref
|
||||
if (($out != "ref") && ($status != 0)) exit $status
|
||||
|
||||
echo "+ all test ok"
|
||||
|
||||
if ($out != "ref") \rm -f *.$out
|
||||
|
||||
exit 0
|
||||
Vendored
BIN
Binary file not shown.
Loaded 100 of 316 files, more files were not shown because too many files have changed in this diff.
Show more
Reference in new issue
Block a user