First commit - second part

Former-commit-id: 202296404e6a70f8ae96db99faffb456104c57e9
Former-commit-id: 118417735d2055683607df9809c9b721cc1b1bab

src/ncbiblast/Makefile

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+# ---------------------------------------------------------------
+# $Id: $
+# ---------------------------------------------------------------
+# @file: Makefile
+# @desc: makefile for package ncbi blast
+#
+# @history:
+# @+	    <Gloup> : Sept 15 : Adapted to ORG.Annot
+#
+# @note: should be processed with gnu compatible make
+# @note: helixware_compatible
+#
+# @end:
+# ---------------------------------------------------------------
+#
+#
+# Due to the long compilation time of ncbi blast sources (~1h),
+# the default build actually consists in extracting pre-compiled
+# binaries.
+#
+# To revert to full compilation from sources, then change
+# the following line
+
+DIRS = binaries
+
+# to
+# 
+# DIRS = src
+
+include ../../config/targets/propagate.targ
+include ../../config/targets/help.targ
+
+all::
+	@echo "+++++++++++ ncbi package ($(DIRS)) done"

src/ncbiblast/README.txt

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+
+Due to the long compilation time of ncbi blast sources (~1h),
+the default build actually consists in extracting pre-compiled
+binaries.
+
+To revert to full compilation from sources, please edit
+the Makefile and change :
+
+DIRS = binaries
+
+to
+
+DIRS = src
+
+

src/ncbiblast/binaries/Makefile

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+# ---------------------------------------------------------------
+# $Id: $
+# ---------------------------------------------------------------
+# @file: Makefile
+# @desc: makefile for package ncbi blast / binaries
+#
+# @history:
+# @+	    <Gloup> : Sept 15 : Adapted to ORG.Annot
+#
+# @note: should be processed with gnu compatible make
+# @note: helixware_compatible
+#
+# @end:
+# ---------------------------------------------------------------
+#
+include ../../../config/auto.conf
+
+PKG = ncbi-blast-2.2.31
+
+PKGTAR = $(PKG).$(PORTNAME).tgz
+
+PKGDIR = bin.$(PORTNAME)
+
+PROGS = blast_formatter makeblastdb \
+        blastn blastp blastx
+
+BINPATH = $(abspath $(BINDIR))
+
+include $(CFGDIR)targets/empty.targ
+include $(CFGDIR)targets/help.targ
+
+.PHONY: extract install
+
+all:: install
+
+extract:
+	test -d $(PKGDIR) || mkdir $(PKGDIR)
+	test -d $(PKGDIR)/bin || $(TAR) zxf $(PKGTAR) -C $(PKGDIR) --strip-components 1
+	
+install: extract
+	test -d $(BINDIR) || mkdir $(BINDIR)
+	cd $(PKGDIR)/bin && \cp -f $(PROGS) $(BINPATH)
+
+clean::
+	(! test -d $(PKGDIR)) || \rm -r $(PKGDIR)
+
+portclean::
+	cd $(BINDIR) && \rm -f $(PROGS)
+

src/ncbiblast/binaries/ncbi-blast-2.2.31.i386-darwin.tgz.REMOVED.git-id

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+0e7930365b9633d9ade6060599cb0f31825e04d8

src/ncbiblast/binaries/ncbi-blast-2.2.31.i386-linux.tgz.REMOVED.git-id

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+f5be2a5e3aae2d9a175aa804f12db0db035cfda5

src/ncbiblast/src/Makefile

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+# ---------------------------------------------------------------
+# $Id: $
+# ---------------------------------------------------------------
+# @file: Makefile
+# @desc: makefile for package ncbi blast
+#
+# @history:
+# @+	    <Gloup> : Sept 15 : Adapted to ORG.Annot
+#
+# @note: should be processed with gnu compatible make
+# @note: helixware_compatible
+#
+# @end:
+# ---------------------------------------------------------------
+#
+
+include ../../../config/auto.conf
+
+PKG = ncbi-blast-2.2.31
+
+PKGPATH := build.$(PORTNAME)
+
+# catchup : test and clean rules
+# ncbi blast don't know how to do this...
+
+test:: PKGDIR = _sink_
+clean:: PKGDIR = _sink_
+portclean:: PKGDIR = _sink_
+
+include $(CFGDIR)targets/package.targ
+
+include $(CFGDIR)targets/help.targ
+
+portclean::
+	(! test -d $(PKGPATH)) || \rm -r $(PKGPATH)