First commit - second part

Former-commit-id: 202296404e6a70f8ae96db99faffb456104c57e9
Former-commit-id: 118417735d2055683607df9809c9b721cc1b1bab

src/sumatra-1.0.10/Makefile

@@ -0,0 +1,44 @@
+EXEC=sumatra
+
+SUMATRA_SRC= sumatra.c \
+			 mtcompare_sumatra.c
+			              
+SUMATRA_OBJ= $(patsubst %.c,%.o,$(SUMATRA_SRC))
+
+
+SRCS= $(SUMATRA_SRC)
+
+LIB= -lfasta -llcs -lfile -lutils -lz -lm
+
+include ./global.mk
+
+all: $(EXEC)
+
+
+########
+#
+# sumatra compilation
+#
+########
+
+# executable compilation and link
+
+sumatra: $(SUMATRA_OBJ) $(LIBFASTA) $(LIBLCS) $(LIBFILE) $(LIBUTILS)
+	$(CC) $(LDFLAGS) -o $@ -pthread $(SUMATRA_OBJ) $(LIBFASTAPATH) $(LIBLCSPATH) $(LIBFILEPATH) $(LIBUTILSPATH) $(LIB)
+	
+########
+#
+# project management
+#
+########
+
+clean:
+	rm -f *.o	
+	rm -f *.P
+	rm -f $(EXEC)
+	$(MAKE) -C ./sumalibs/libfasta clean
+	$(MAKE) -C ./sumalibs/liblcs clean
+	$(MAKE) -C ./sumalibs/libfile clean
+	$(MAKE) -C ./sumalibs/libutils clean
+
+