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coissac
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coissac
deleted branch push-rxrxptuxltlp from
OBIKmers/obikmer
2026-05-30 14:03:14 +00:00
coissac
pushed to
main
at
OBIKmers/obikmer
2026-05-30 14:03:14 +00:00
728476a0a6
Merge pull request 'Push rxrxptuxltlp' (
#12
) from push-rxrxptuxltlp into main
8a0b898b4b
docs: clarify query pipeline, Findere trick, and input formats
708b0abf9b
refactor: aggregate query results at sequence level
Compare 3 commits »
coissac
merged pull request
OBIKmers/obikmer#12
2026-05-30 14:03:13 +00:00
Push rxrxptuxltlp
coissac
created pull request
OBIKmers/obikmer#12
2026-05-30 14:03:04 +00:00
Push rxrxptuxltlp
coissac
created branch
push-rxrxptuxltlp
in
OBIKmers/obikmer
2026-05-30 14:02:39 +00:00
coissac
pushed to
push-rxrxptuxltlp
at
OBIKmers/obikmer
2026-05-30 14:02:39 +00:00
8a0b898b4b
docs: clarify query pipeline, Findere trick, and input formats
708b0abf9b
refactor: aggregate query results at sequence level
Compare 2 commits »
coissac
pushed to
main
at
OBIKmers/obikmer
2026-05-29 07:22:00 +00:00
3138f6382c
Merge pull request 'Push nvyqwlpspwvl' (
#11
) from push-nvyqwlpspwvl into main
86b88acb95
feat: implement approximate k-mer indexing and optimize query
be0e8f1041
refactor(query): parallelize query execution with obipipeline
eaa52eaab5
feat: introduce nucstream abstraction and comprehensive test suite
cfadf63bbc
refactor: migrate pipeline to NucPage-based stream processing
Compare 7 commits »
coissac
deleted branch push-nvyqwlpspwvl from
OBIKmers/obikmer
2026-05-29 07:22:00 +00:00
coissac
merged pull request
OBIKmers/obikmer#11
2026-05-29 07:21:58 +00:00
Push nvyqwlpspwvl
coissac
created pull request
OBIKmers/obikmer#11
2026-05-29 07:21:51 +00:00
Push nvyqwlpspwvl
coissac
pushed to
push-nvyqwlpspwvl
at
OBIKmers/obikmer
2026-05-29 07:21:27 +00:00
86b88acb95
feat: implement approximate k-mer indexing and optimize query
be0e8f1041
refactor(query): parallelize query execution with obipipeline
eaa52eaab5
feat: introduce nucstream abstraction and comprehensive test suite
cfadf63bbc
refactor: migrate pipeline to NucPage-based stream processing
a4b57a96de
feat: add streaming sequence reader and superkmer iterator
Compare 6 commits »
coissac
created branch
push-nvyqwlpspwvl
in
OBIKmers/obikmer
2026-05-29 07:21:27 +00:00
coissac
deleted branch push-tklvqnrqtzpo from
OBIKmers/obikmer
2026-05-26 15:41:08 +00:00
coissac
pushed to
main
at
OBIKmers/obikmer
2026-05-26 15:41:08 +00:00
82ec6aa1cf
Merge pull request 'Push tklvqnrqtzpo' (
#10
) from push-tklvqnrqtzpo into main
694da5208e
feat: add Findere z-window filtering and detail mode coverage tracking
26ab165807
refactor: add rolling buffer methods and document label constraints
dfa0b2bac2
feat: add utils subcommand for renaming genome labels
9e60a711bc
Enforce minimum input paths and handle stdin sentinel
Compare 7 commits »
coissac
merged pull request
OBIKmers/obikmer#10
2026-05-26 15:41:06 +00:00
Push tklvqnrqtzpo
coissac
created pull request
OBIKmers/obikmer#10
2026-05-26 15:40:59 +00:00
Push tklvqnrqtzpo
coissac
pushed to
push-tklvqnrqtzpo
at
OBIKmers/obikmer
2026-05-26 15:40:49 +00:00
694da5208e
feat: add Findere z-window filtering and detail mode coverage tracking
26ab165807
refactor: add rolling buffer methods and document label constraints
dfa0b2bac2
feat: add utils subcommand for renaming genome labels
9e60a711bc
Enforce minimum input paths and handle stdin sentinel
98c14aade9
feat: centralize index configuration and add hybrid mode
Compare 6 commits »
coissac
created branch
push-tklvqnrqtzpo
in
OBIKmers/obikmer
2026-05-26 15:40:49 +00:00
coissac
deleted branch push-vqmnuyrkpxot from
OBIKmers/obikmer
2026-05-26 09:05:52 +00:00
coissac
pushed to
main
at
OBIKmers/obikmer
2026-05-26 09:05:52 +00:00
6f7abddeaf
Merge pull request 'Push vqmnuyrkpxot' (
#9
) from push-vqmnuyrkpxot into main
1d880fdc5f
refactor: optimize MPHF construction and update legacy guidelines
009a328c58
refactor: handle kmer deduplication and layer initialization concurrently
9d46400898
feat: support exact and approximate evidence in layer construction
036d044291
refactor: update core types and add approximate evidence support
Compare 5 commits »
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