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coissac
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coissac
pushed to
push-ruqusmkoyvwm
at
OBIKmers/obikmer
2026-06-05 08:40:39 +00:00
d202ead385
feat: parallelize unitig extraction and FASTA output
249998beed
perf: add structured performance profiling for unitig stages
2f29ee2240
feat: Add parallel execution and thread-safe graph operations
edd5e3f8ee
feat: add bits-per-kmer diagnostic and stats module
bb7adc1154
docs: expand kmer indexing, filtering, and merging documentation
Compare 10 commits »
coissac
created branch
push-ruqusmkoyvwm
in
OBIKmers/obikmer
2026-06-05 08:40:39 +00:00
coissac
deleted branch push-rrwpnquuzsvr from
OBIKmers/obikmer
2026-06-03 17:04:27 +00:00
coissac
pushed to
main
at
OBIKmers/obikmer
2026-06-03 17:04:27 +00:00
edc18b4908
Merge pull request 'Push rrwpnquuzsvr' (
#15
) from push-rrwpnquuzsvr into main
02cb30c0ef
feat: add obisys crate for standardized CLI progress reporting
4677d6f177
refactor: improve resource cleanup and index packing
Compare 3 commits »
coissac
merged pull request
OBIKmers/obikmer#15
2026-06-03 17:04:26 +00:00
Push rrwpnquuzsvr
coissac
created pull request
OBIKmers/obikmer#15
2026-06-03 17:04:20 +00:00
Push rrwpnquuzsvr
coissac
pushed to
push-rrwpnquuzsvr
at
OBIKmers/obikmer
2026-06-03 17:04:11 +00:00
02cb30c0ef
feat: add obisys crate for standardized CLI progress reporting
4677d6f177
refactor: improve resource cleanup and index packing
Compare 2 commits »
coissac
created branch
push-rrwpnquuzsvr
in
OBIKmers/obikmer
2026-06-03 17:04:11 +00:00
coissac
pushed to
main
at
OBIKmers/obikmer
2026-06-03 13:18:43 +00:00
7a29ca6305
Merge pull request 'Push ywwwypqxrtmy' (
#14
) from push-ywwwypqxrtmy into main
bba5147f0f
fix: account for k-mer overlap in total_bases calculation
bfe0cb4b82
feat: integrate obikseq to configure global k-mer and minimizer sizes
173ac9fb42
feat: introduce packed matrix storage and layer metadata
de1a41810a
perf: enable zero-allocation queries and memory-mapped indexes
Compare 7 commits »
coissac
deleted branch push-ywwwypqxrtmy from
OBIKmers/obikmer
2026-06-03 13:18:43 +00:00
coissac
merged pull request
OBIKmers/obikmer#14
2026-06-03 13:18:41 +00:00
Push ywwwypqxrtmy
coissac
created pull request
OBIKmers/obikmer#14
2026-06-03 13:18:28 +00:00
Push ywwwypqxrtmy
coissac
created branch
push-ywwwypqxrtmy
in
OBIKmers/obikmer
2026-06-03 13:18:18 +00:00
coissac
pushed to
push-ywwwypqxrtmy
at
OBIKmers/obikmer
2026-06-03 13:18:18 +00:00
bba5147f0f
fix: account for k-mer overlap in total_bases calculation
bfe0cb4b82
feat: integrate obikseq to configure global k-mer and minimizer sizes
173ac9fb42
feat: introduce packed matrix storage and layer metadata
de1a41810a
perf: enable zero-allocation queries and memory-mapped indexes
1661dd6b1c
feat: introduce preloaded index cache and thread-safe progress tracker
Compare 6 commits »
coissac
deleted branch push-pnxswqpxlyso from
OBIKmers/obikmer
2026-06-01 12:45:47 +00:00
coissac
pushed to
main
at
OBIKmers/obikmer
2026-06-01 12:45:47 +00:00
4fd0eb989f
Merge pull request 'Push pnxswqpxlyso' (
#13
) from push-pnxswqpxlyso into main
add6d7f873
enforce uniform index mode and optimize base index selection
0350ca855b
refactor: streamline merge pipeline and MPHF indexing
1e2115a1b0
docs: Update README to reflect new indexing workflow
657f964dda
refactor: abstract k-mer types and fix bit alignment
Compare 6 commits »
coissac
merged pull request
OBIKmers/obikmer#13
2026-06-01 12:45:46 +00:00
Push pnxswqpxlyso
coissac
created pull request
OBIKmers/obikmer#13
2026-06-01 12:44:40 +00:00
Push pnxswqpxlyso
coissac
pushed to
push-pnxswqpxlyso
at
OBIKmers/obikmer
2026-06-01 12:44:20 +00:00
add6d7f873
enforce uniform index mode and optimize base index selection
0350ca855b
refactor: streamline merge pipeline and MPHF indexing
1e2115a1b0
docs: Update README to reflect new indexing workflow
657f964dda
refactor: abstract k-mer types and fix bit alignment
8b57c91ab7
feat: add iter_canonical_kmers iterator and tests
Compare 5 commits »
coissac
created branch
push-pnxswqpxlyso
in
OBIKmers/obikmer
2026-06-01 12:44:20 +00:00
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