coissac
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  • Joined on 2025-05-22
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coissac merged pull request OBIKmers/obikmer#19 2026-06-09 08:28:21 +00:00
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coissac created pull request OBIKmers/obikmer#19 2026-06-09 08:28:15 +00:00
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coissac pushed to push-lrwmyplxxzkn at OBIKmers/obikmer 2026-06-09 08:27:53 +00:00
7dd8db1409 docs: document conservative rounding strategy for filtering thresholds
ce45e2fbe1 refactor: centralize k-mer filtering logic and add validation
2465cfbc4b Parallelize partition iteration using Rayon
d626d42ec7 feat: add --head and --presence-threshold to dump and distance
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coissac created branch push-lrwmyplxxzkn in OBIKmers/obikmer 2026-06-09 08:27:53 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-06-08 18:15:03 +00:00
650eea43b6 Merge pull request 'Push quqlpklvxsqx' (#18) from push-quqlpklvxsqx into main
eb7805c747 feat: add configurable presence threshold to kmer distance
1ec65922df feat: implement parallel pairwise distance matrices
09d9e21744 feat: integrate tracing and enhance bit matrix operations
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coissac deleted branch push-quqlpklvxsqx from OBIKmers/obikmer 2026-06-08 18:15:03 +00:00
coissac merged pull request OBIKmers/obikmer#18 2026-06-08 18:15:02 +00:00
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coissac created pull request OBIKmers/obikmer#18 2026-06-08 18:14:55 +00:00
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coissac pushed to push-quqlpklvxsqx at OBIKmers/obikmer 2026-06-08 18:14:46 +00:00
eb7805c747 feat: add configurable presence threshold to kmer distance
1ec65922df feat: implement parallel pairwise distance matrices
09d9e21744 feat: integrate tracing and enhance bit matrix operations
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coissac created branch push-quqlpklvxsqx in OBIKmers/obikmer 2026-06-08 18:14:45 +00:00
coissac deleted branch push-pvqkqxlkkwry from OBIKmers/obikmer 2026-06-06 04:44:11 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-06-06 04:44:11 +00:00
3f47e22083 Merge pull request 'Push pvqkqxlkkwry' (#17) from push-pvqkqxlkkwry into main
03c7bb0b99 Relax unitig assertion in debruijn test
b39eee688a refactor(debruijn): unify graph traversal with WalkState iterator
95b3461405 refactor: centralize graph traversal logic in walk
952a21eef8 refactor: remove naked_asm and extract collect_unitigs helper
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coissac merged pull request OBIKmers/obikmer#17 2026-06-06 04:44:11 +00:00
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coissac created pull request OBIKmers/obikmer#17 2026-06-06 04:44:04 +00:00
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coissac created branch push-pvqkqxlkkwry in OBIKmers/obikmer 2026-06-06 04:43:58 +00:00
coissac pushed to push-pvqkqxlkkwry at OBIKmers/obikmer 2026-06-06 04:43:58 +00:00
03c7bb0b99 Relax unitig assertion in debruijn test
b39eee688a refactor(debruijn): unify graph traversal with WalkState iterator
95b3461405 refactor: centralize graph traversal logic in walk
952a21eef8 refactor: remove naked_asm and extract collect_unitigs helper
5c2f48535f refactor: rename compute_degrees and mark start nodes
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coissac deleted branch push-ruqusmkoyvwm from OBIKmers/obikmer 2026-06-05 08:41:09 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-06-05 08:41:09 +00:00
ea2c594c86 Merge pull request 'Push ruqusmkoyvwm' (#16) from push-ruqusmkoyvwm into main
d202ead385 feat: parallelize unitig extraction and FASTA output
249998beed perf: add structured performance profiling for unitig stages
2f29ee2240 feat: Add parallel execution and thread-safe graph operations
edd5e3f8ee feat: add bits-per-kmer diagnostic and stats module
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coissac merged pull request OBIKmers/obikmer#16 2026-06-05 08:41:08 +00:00
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coissac created pull request OBIKmers/obikmer#16 2026-06-05 08:41:01 +00:00
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