coissac
0 Followers · 0 Following
  • Joined on 2025-05-22
Repositories Projects Packages Public Activity Starred Repositories
coissac pushed to push-lsqnpxrxuvpp at OBIKmers/obikmer 2026-08-10 20:38:42 +00:00
f5e508ed33 feat: add multi-genome SNP pseudo-alignment and CLI export
49f329edd5 feat: add raw SNP distance calculation and CLI flag
1a470eab9e Refactor k-mer sibling tracking to compact bitmask and on-demand counts
ba990a48a0 feat: add obipipeline for concurrent sibling annex stats
ea914bb536 feat: implement per-k-mer sibling counts and central neighbor generation
Compare 8 commits »
coissac deleted branch push-qowsvpqmoukq from OBIKmers/obikmer 2026-07-08 18:05:44 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-07-08 18:05:44 +00:00
dc3392865f Merge pull request 'Push qowsvpqmoukq' (#61) from push-qowsvpqmoukq into main
fd2c23e7df refactor: remove equivalence class folding from entropy pipeline
912f788f7f feat: extract k-mer entropy computation into new obikentropy crate
e725523898 feat: add entropy-driven k-mer complexity filtering
Compare 4 commits »
coissac merged pull request OBIKmers/obikmer#61 2026-07-08 18:05:43 +00:00
Push qowsvpqmoukq
coissac created pull request OBIKmers/obikmer#61 2026-07-08 18:05:28 +00:00
Push qowsvpqmoukq
coissac released v1.1.39 at OBIKmers/obikmer 2026-07-08 17:39:57 +00:00
coissac pushed tag v1.1.39 to OBIKmers/obikmer 2026-07-08 17:37:28 +00:00
coissac pushed to push-qowsvpqmoukq at OBIKmers/obikmer 2026-07-08 17:36:33 +00:00
fd2c23e7df refactor: remove equivalence class folding from entropy pipeline
912f788f7f feat: extract k-mer entropy computation into new obikentropy crate
e725523898 feat: add entropy-driven k-mer complexity filtering
Compare 3 commits »
coissac created branch push-qowsvpqmoukq in OBIKmers/obikmer 2026-07-08 17:36:33 +00:00
coissac released v1.1.38 at OBIKmers/obikmer 2026-07-08 10:17:58 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-07-08 10:15:52 +00:00
165982fb07 Merge pull request 'Bump obikmer version to 1.1.38 and add memory footprint logging' (#60) from push-slxmykzqmzzv into main
2740f52326 Bump obikmer version to 1.1.38 and add memory footprint logging
Compare 2 commits »
coissac deleted branch push-slxmykzqmzzv from OBIKmers/obikmer 2026-07-08 10:15:52 +00:00
coissac merged pull request OBIKmers/obikmer#60 2026-07-08 10:15:52 +00:00
Bump obikmer version to 1.1.38 and add memory footprint logging
coissac created pull request OBIKmers/obikmer#60 2026-07-08 10:15:45 +00:00
Bump obikmer version to 1.1.38 and add memory footprint logging
coissac pushed tag v1.1.38 to OBIKmers/obikmer 2026-07-08 10:15:29 +00:00
coissac created branch push-slxmykzqmzzv in OBIKmers/obikmer 2026-07-08 10:15:02 +00:00
coissac pushed to push-slxmykzqmzzv at OBIKmers/obikmer 2026-07-08 10:15:02 +00:00
2740f52326 Bump obikmer version to 1.1.38 and add memory footprint logging
coissac released v1.1.37 at OBIKmers/obikmer 2026-07-07 17:15:10 +00:00
coissac deleted branch push-smluomvxpptv from OBIKmers/obikmer 2026-07-07 17:13:05 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-07-07 17:13:05 +00:00
dff5d2f457 Merge pull request 'Push smluomvxpptv' (#59) from push-smluomvxpptv into main
eea884f393 ci: improve release workflow and bump obikmer to v1.1.37
ae42a061bd perf: optimize k-mer queries with sparse index and run-based aggregation
040eff140c refactor(query): optimize mmap locality with column-major matrix fetch
a348637f3b refactor(query): deduplicate k-mers upfront and split MPHF lookup
Compare 10 commits »