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<?xml version="1.0" encoding="UTF-8"?>
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<?xml-stylesheet type="text/xsl" href="xs3p.xsl"?>
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<!--
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||||
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||||
The OBIMetabarcode schema
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||||
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||||
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||||
-->
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||||
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||||
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
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||||
targetNamespace="http://metabarcoding.org/OBIMetabarcodes" xmlns:tns="http://metabarcoding.org/OBIMetabarcodes"
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||||
elementFormDefault="qualified" xmlns:mods="http://www.loc.gov/mods/v3">
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||||
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||||
|
||||
<!-- *************************************************************
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||||
|
||||
We import the MODS schema which define the model
|
||||
for bibliographic references produced by the library
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||||
of congress
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||||
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||||
http://www.loc.gov/standards/mods/
|
||||
|
||||
You can also check the CSL schema which can be use
|
||||
for declaring way to present bibliography references
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||||
|
||||
http://citationstyles.org
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||||
|
||||
************************************************************* -->
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||||
|
||||
<xs:import namespace="http://www.loc.gov/mods/v3"
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||||
schemaLocation="mods-3-5.xsd" />
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||||
|
||||
<!-- *************************************************************
|
||||
|
||||
Declaration of the simple types
|
||||
|
||||
************************************************************* -->
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||||
|
||||
<!-- documentation_t : subclass of xs:string for documentation elememts -->
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||||
|
||||
<xs:simpleType name="documentation_t">
|
||||
<xs:annotation>
|
||||
<xs:documentation>The documentation_t type is a string of characters allowing to document an instance in the database.</xs:documentation>
|
||||
</xs:annotation>
|
||||
<xs:restriction base="xs:string"></xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<!-- organelle_t : subclass of xs:string for documentation elememts -->
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||||
|
||||
<xs:simpleType name="organelle_t">
|
||||
<xs:annotation>
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||||
<xs:documentation>
|
||||
The organelle_t type allows to specify a value
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||||
indicating on which organelle is located another element
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
<xs:restriction base="xs:string">
|
||||
<xs:enumeration value="nucleus">
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||||
<xs:annotation>
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||||
<xs:documentation>
|
||||
Indicates that the marker corresponds to a locus
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||||
belonging the nuclear genome
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||||
</xs:documentation>
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||||
</xs:annotation>
|
||||
</xs:enumeration>
|
||||
<xs:enumeration value="chloroplast">
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
Indicates that the marker corresponds to a locus
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||||
belonging the chloroplastic genome
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||||
</xs:documentation>
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||||
</xs:annotation>
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||||
</xs:enumeration>
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||||
<xs:enumeration value="mitochondria">
|
||||
<xs:annotation>
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||||
<xs:documentation>
|
||||
Indicates that the marker corresponds to a locus
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||||
belonging the mitochondrial genome
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||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
</xs:enumeration>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<!-- identifier_t : subclass of xs:string for identifier -->
|
||||
<!-- and its subclasses for each type of identifiers -->
|
||||
|
||||
<xs:simpleType name="identifier_t">
|
||||
<xs:restriction base="xs:string">
|
||||
<xs:pattern value="[A-Z]{2}\.[A-Z0-9_]+"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="locusid_t">
|
||||
<xs:restriction base="tns:identifier_t">
|
||||
<xs:pattern value="LO\..+"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="primerid_t">
|
||||
<xs:restriction base="tns:identifier_t">
|
||||
<xs:pattern value="PR\..+"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="biblioid_t">
|
||||
<xs:restriction base="tns:identifier_t">
|
||||
<xs:pattern value="BI\..+"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="taxid_t">
|
||||
<xs:restriction base="tns:identifier_t">
|
||||
<xs:pattern value="TX\.[0-9]+"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="metabarcodeid_t">
|
||||
<xs:restriction base="tns:identifier_t">
|
||||
<xs:pattern value="MB\..+"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="roottaxid_t">
|
||||
<xs:restriction base="tns:taxid_t">
|
||||
<xs:pattern value="TX\.1"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="rank_t">
|
||||
<xs:restriction base="xs:string">
|
||||
<xs:enumeration value="class"></xs:enumeration>
|
||||
<xs:enumeration value="family"></xs:enumeration>
|
||||
<xs:enumeration value="forma"></xs:enumeration>
|
||||
<xs:enumeration value="genus"></xs:enumeration>
|
||||
<xs:enumeration value="infraclass"></xs:enumeration>
|
||||
<xs:enumeration value="infraorder"></xs:enumeration>
|
||||
<xs:enumeration value="kingdom"></xs:enumeration>
|
||||
<xs:enumeration value="no rank"></xs:enumeration>
|
||||
<xs:enumeration value="order"></xs:enumeration>
|
||||
<xs:enumeration value="parvorder"></xs:enumeration>
|
||||
<xs:enumeration value="phylum"></xs:enumeration>
|
||||
<xs:enumeration value="species"></xs:enumeration>
|
||||
<xs:enumeration value="[species group"></xs:enumeration>
|
||||
<xs:enumeration value="species subgroup"></xs:enumeration>
|
||||
<xs:enumeration value="subclass"></xs:enumeration>
|
||||
<xs:enumeration value="subfamily"></xs:enumeration>
|
||||
<xs:enumeration value="subgenus"></xs:enumeration>
|
||||
<xs:enumeration value="subkingdom"></xs:enumeration>
|
||||
<xs:enumeration value="suborder"></xs:enumeration>
|
||||
<xs:enumeration value="subphylum"></xs:enumeration>
|
||||
<xs:enumeration value="subspecies"></xs:enumeration>
|
||||
<xs:enumeration value="subtribe"></xs:enumeration>
|
||||
<xs:enumeration value="superclass"></xs:enumeration>
|
||||
<xs:enumeration value="superfamily"></xs:enumeration>
|
||||
<xs:enumeration value="superkingdom"></xs:enumeration>
|
||||
<xs:enumeration value="superorder"></xs:enumeration>
|
||||
<xs:enumeration value="superphylum"></xs:enumeration>
|
||||
<xs:enumeration value="tribe"></xs:enumeration>
|
||||
<xs:enumeration value="varietas"></xs:enumeration>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="rootrank_t">
|
||||
<xs:restriction base="tns:rank_t">
|
||||
<xs:enumeration value="no rank"></xs:enumeration>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<xs:simpleType name="iupac_t">
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
The iupc_t type is a string of characters symbolizing
|
||||
nucleotides in the iupac system, and thus belonging to
|
||||
the folowing list of letters:
|
||||
A,C,G,T,U,R,Y,M,K,W,S,B,D,H,V,N. The type also contrains
|
||||
the sequence to be written in upper cases.
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
<xs:restriction base="xs:string">
|
||||
<xs:pattern value="[ACGTRYMKWSBDHVN]+"></xs:pattern>
|
||||
<xs:minLength value="15"></xs:minLength>
|
||||
<xs:whiteSpace value="collapse"></xs:whiteSpace>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
|
||||
<!-- *************************************************************
|
||||
|
||||
Declaration of the complex types
|
||||
|
||||
************************************************************* -->
|
||||
|
||||
<!-- obimetabarcodedb_t : the main type of the schema -->
|
||||
|
||||
<xs:complexType name="obimetabarcodedb_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="metadata" type="tns:metadata_t"
|
||||
maxOccurs="1" minOccurs="1">
|
||||
</xs:element>
|
||||
<xs:element name="taxonomy" type="tns:taxa_t" maxOccurs="1" minOccurs="1"></xs:element>
|
||||
<xs:element name="primers" type="tns:primers_t"
|
||||
maxOccurs="1" minOccurs="1">
|
||||
</xs:element>
|
||||
<xs:element name="metabarcodes" type="tns:metabarcodes_t"
|
||||
maxOccurs="1" minOccurs="1">
|
||||
</xs:element>
|
||||
<xs:element name="bibliography"
|
||||
type="mods:modsCollectionDefinition" maxOccurs="1" minOccurs="0">
|
||||
</xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
|
||||
<!-- metadata_t : contains the metadata related to the database -->
|
||||
|
||||
<xs:complexType name="metadata_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="loci" type="tns:loci_t" maxOccurs="1"
|
||||
minOccurs="1"></xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
|
||||
<!-- The metabarcode descriptions by themselves -->
|
||||
|
||||
<xs:complexType name="metabarcodes_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="metabarcode" type="tns:metabarcode_t"
|
||||
maxOccurs="unbounded" minOccurs="0">
|
||||
|
||||
<!-- insure that the same primer is not used twice -->
|
||||
|
||||
<xs:unique name="uniqbarcodeprimer">
|
||||
<xs:selector xpath="tns:forward|tns:reverse" />
|
||||
<xs:field xpath="." />
|
||||
</xs:unique>
|
||||
|
||||
</xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="metabarcode_t">
|
||||
<xs:sequence>
|
||||
|
||||
|
||||
<xs:element name="name" type="xs:string" maxOccurs="1"
|
||||
minOccurs="1">
|
||||
</xs:element>
|
||||
|
||||
<xs:element name="locus" type="tns:locusid_t" maxOccurs="1"
|
||||
minOccurs="1">
|
||||
</xs:element>
|
||||
|
||||
<xs:element name="forward" type="tns:primerid_t"
|
||||
maxOccurs="unbounded" minOccurs="1">
|
||||
</xs:element>
|
||||
|
||||
<xs:element name="reverse" type="tns:primerid_t"
|
||||
maxOccurs="unbounded" minOccurs="1">
|
||||
</xs:element>
|
||||
|
||||
<xs:element name="targettaxon" type="tns:taxid_t"
|
||||
maxOccurs="unbounded" minOccurs="1">
|
||||
</xs:element>
|
||||
|
||||
<xs:element name="excludedtaxon" type="tns:taxid_t"
|
||||
maxOccurs="unbounded" minOccurs="0">
|
||||
</xs:element>
|
||||
|
||||
<xs:element name="targetlength" type="tns:interval_t" maxOccurs="1" minOccurs="0"></xs:element>
|
||||
<xs:element name="documentation" type="tns:documentation_t"
|
||||
maxOccurs="1" minOccurs="0">
|
||||
</xs:element>
|
||||
|
||||
<xs:element name="references" type="tns:references_t"
|
||||
maxOccurs="1" minOccurs="0">
|
||||
|
||||
<!-- insure that the same bibliographic reference is not used twice -->
|
||||
|
||||
<xs:unique name="uniqbarcodereference">
|
||||
<xs:selector xpath="tns:describedin|tns:usedin" />
|
||||
<xs:field xpath="@biblioid" />
|
||||
</xs:unique>
|
||||
|
||||
</xs:element>
|
||||
|
||||
</xs:sequence>
|
||||
|
||||
<xs:attribute name="ID" type="tns:metabarcodeid_t" use="required"></xs:attribute>
|
||||
|
||||
</xs:complexType> <!-- end of metabarcode_t -->
|
||||
|
||||
|
||||
|
||||
<xs:complexType name="loci_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="abstractlocus" type="tns:abstractlocus_t"
|
||||
maxOccurs="unbounded" minOccurs="0">
|
||||
</xs:element>
|
||||
<xs:element name="locus" type="tns:locus_t" maxOccurs="unbounded" minOccurs="0"></xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="locus_t">
|
||||
<xs:complexContent>
|
||||
<xs:extension base="tns:abstractlocus_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="organelle" type="tns:organelle_t" maxOccurs="1" minOccurs="1"></xs:element>
|
||||
</xs:sequence>
|
||||
</xs:extension>
|
||||
</xs:complexContent>
|
||||
</xs:complexType>
|
||||
|
||||
|
||||
|
||||
<xs:complexType name="primers_t">
|
||||
<xs:annotation>
|
||||
<xs:documentation>The primers_t type gathers several (usually two) primer_t elements</xs:documentation>
|
||||
</xs:annotation>
|
||||
<xs:sequence>
|
||||
<xs:element name="primer" type="tns:primer_t" maxOccurs="unbounded"
|
||||
minOccurs="0">
|
||||
</xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="primer_t">
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
This type describes a PCR primer.
|
||||
It has a mandatory attribut "name" containing a unique identifier.
|
||||
Primer is described by ...
|
||||
The primer_t type has an attribute name specifying its name,
|
||||
and includes a sequence element specifying its nucleotide sequence.
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
<xs:sequence>
|
||||
<xs:element name="name" type="xs:string" maxOccurs="1"
|
||||
minOccurs="1">
|
||||
</xs:element>
|
||||
<xs:element name="sequence" type="tns:iupac_t" maxOccurs="1"
|
||||
minOccurs="1">
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
The nucleic sequence of the primer. The primer
|
||||
length must be greater than 15bp
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
</xs:element>
|
||||
<xs:element name="coding" type="xs:boolean" maxOccurs="1"
|
||||
minOccurs="1">
|
||||
</xs:element>
|
||||
<xs:element name="documentation" type="tns:documentation_t"
|
||||
maxOccurs="1" minOccurs="0">
|
||||
</xs:element>
|
||||
</xs:sequence>
|
||||
<xs:attribute name="ID" type="tns:primerid_t" use="required">
|
||||
<xs:annotation>
|
||||
<xs:documentation>The name of the primer</xs:documentation>
|
||||
</xs:annotation>
|
||||
</xs:attribute>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="references_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="describedin" type="tns:reference_t"
|
||||
maxOccurs="1" minOccurs="0">
|
||||
</xs:element>
|
||||
<xs:element name="usedin" type="tns:reference_t"
|
||||
maxOccurs="unbounded" minOccurs="0"></xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
|
||||
|
||||
<xs:complexType name="reference_t">
|
||||
<xs:simpleContent>
|
||||
<xs:extension base="tns:documentation_t">
|
||||
<xs:attribute name="biblioid" type="tns:biblioid_t"></xs:attribute>
|
||||
</xs:extension>
|
||||
</xs:simpleContent>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="taxa_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="root" type="tns:roottaxon_t" maxOccurs="1" minOccurs="1"></xs:element>
|
||||
<xs:element name="taxon" type="tns:taxon_t" maxOccurs="unbounded" minOccurs="0"></xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="abstracttaxon_t" abstract="true">
|
||||
<xs:sequence>
|
||||
<xs:element name="name" type="xs:string"></xs:element>
|
||||
<xs:element name="rank" type="tns:rank_t"></xs:element>
|
||||
</xs:sequence>
|
||||
<xs:attribute name="ID" type="tns:taxid_t"></xs:attribute>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="taxon_t">
|
||||
<xs:complexContent>
|
||||
<xs:extension base="tns:abstracttaxon_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="partof" type="tns:taxid_t"></xs:element>
|
||||
</xs:sequence>
|
||||
</xs:extension>
|
||||
</xs:complexContent>
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="roottaxon_t">
|
||||
<xs:complexContent>
|
||||
<xs:restriction base="tns:abstracttaxon_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="name">
|
||||
<xs:simpleType>
|
||||
<xs:restriction base="xs:string">
|
||||
<xs:pattern value="Root"></xs:pattern>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
</xs:element>
|
||||
<xs:element name="rank" type="tns:rootrank_t"></xs:element>
|
||||
</xs:sequence>
|
||||
<xs:attribute name="ID" type="tns:roottaxid_t"></xs:attribute>
|
||||
</xs:restriction>
|
||||
</xs:complexContent>
|
||||
</xs:complexType>
|
||||
|
||||
|
||||
|
||||
<!-- The root xs:element of the library -->
|
||||
|
||||
<xs:element name="obimetabarcodedb" type="tns:obimetabarcodedb_t">
|
||||
|
||||
<!-- Unicity constraints -->
|
||||
|
||||
<xs:unique name="uniqprimer">
|
||||
<xs:selector xpath="./tns:primers/tns:primer" />
|
||||
<xs:field xpath="tns:sequence" />
|
||||
</xs:unique>
|
||||
|
||||
|
||||
<!-- Primary key constraints -->
|
||||
|
||||
<xs:key name="barcodeid">
|
||||
<xs:selector xpath="./tns:metabarcodes/tns:metabarcode" />
|
||||
<xs:field xpath="@ID" />
|
||||
</xs:key>
|
||||
|
||||
<xs:key name="abstractlocusid">
|
||||
<xs:selector xpath="./tns:metadata/tns:loci/tns:abstractlocus|./tns:metadata/tns:loci/tns:locus" />
|
||||
<xs:field xpath="@ID" />
|
||||
</xs:key>
|
||||
|
||||
<xs:key name="locusid">
|
||||
<xs:selector xpath="./tns:metadata/tns:loci/tns:locus" />
|
||||
<xs:field xpath="@ID" />
|
||||
</xs:key>
|
||||
|
||||
<xs:key name="primerid">
|
||||
<xs:selector xpath="./tns:primers/tns:primer" />
|
||||
<xs:field xpath="@ID" />
|
||||
</xs:key>
|
||||
|
||||
<xs:key name="biblioid">
|
||||
<xs:selector xpath="./tns:bibliography/mods:mods" />
|
||||
<xs:field xpath="@ID" />
|
||||
</xs:key>
|
||||
|
||||
<xs:key name="roottaxid">
|
||||
<xs:selector xpath="./tns:taxonomy/tns:taxon|./tns:taxonomy/tns:root" />
|
||||
<xs:field xpath="@ID" />
|
||||
</xs:key>
|
||||
|
||||
<xs:key name="taxid">
|
||||
<xs:selector xpath="./tns:taxonomy/tns:taxon" />
|
||||
<xs:field xpath="@ID" />
|
||||
</xs:key>
|
||||
|
||||
|
||||
|
||||
<!-- Foreign key constaints -->
|
||||
|
||||
<!-- Constraint on forward and reverse primers -->
|
||||
|
||||
<xs:keyref name="forward_ref" refer="tns:primerid">
|
||||
<xs:selector xpath="./tns:metabarcodes/tns:metabarcode"></xs:selector>
|
||||
<xs:field xpath="tns:forward"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="reverse_ref" refer="tns:primerid">
|
||||
<xs:selector xpath="./tns:metabarcodes/tns:metabarcode"></xs:selector>
|
||||
<xs:field xpath="tns:reverse"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="target_ref" refer="tns:taxid">
|
||||
<xs:selector xpath="./tns:metabarcodes/tns:metabarcode"></xs:selector>
|
||||
<xs:field xpath="tns:targettaxon"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="excluded_ref" refer="tns:taxid">
|
||||
<xs:selector xpath="./tns:metabarcodes/tns:metabarcode"></xs:selector>
|
||||
<xs:field xpath="tns:excludedtaxon"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="describedin_ref" refer="tns:biblioid">
|
||||
<xs:selector
|
||||
xpath="./tns:metabarcodes/tns:metabarcode/tns:references/tns:describedin"></xs:selector>
|
||||
<xs:field xpath="@biblioid"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="usedin_ref" refer="tns:biblioid">
|
||||
<xs:selector
|
||||
xpath="./tns:metabarcodes/tns:metabarcode/tns:references/tns:usedin"></xs:selector>
|
||||
<xs:field xpath="@biblioid"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="partof_ref" refer="tns:abstractlocusid">
|
||||
<xs:selector
|
||||
xpath="./tns:metadata/tns:loci/tns:abstractlocus|./tns:metadata/tns:loci/tns:locus"></xs:selector>
|
||||
<xs:field xpath="tns:partof"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="barcodelocus_ref" refer="tns:locusid">
|
||||
<xs:selector
|
||||
xpath="./tns:metabarcodes/tns:metabarcode"></xs:selector>
|
||||
<xs:field xpath="tns:locus"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
<xs:keyref name="taxopartof_ref" refer="tns:roottaxid">
|
||||
<xs:selector xpath="./tns:metabarcodes/tns:taxonomy/tns:taxon"></xs:selector>
|
||||
<xs:field xpath="@ID"></xs:field>
|
||||
</xs:keyref>
|
||||
|
||||
</xs:element>
|
||||
|
||||
<!-- *************************************************************
|
||||
|
||||
Declaration of the root element of the document
|
||||
|
||||
************************************************************* -->
|
||||
|
||||
<xs:complexType name="abstractlocus_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="name" type="xs:string" maxOccurs="1" minOccurs="1"></xs:element>
|
||||
<xs:element name="partof" type="tns:locusid_t" maxOccurs="1"
|
||||
minOccurs="0">
|
||||
</xs:element>
|
||||
<xs:element name="documentation" type="tns:documentation_t"
|
||||
maxOccurs="1" minOccurs="0">
|
||||
</xs:element>
|
||||
</xs:sequence>
|
||||
<xs:attribute name="ID" type="tns:locusid_t" use="required"></xs:attribute>
|
||||
</xs:complexType>
|
||||
|
||||
|
||||
<xs:complexType name="computedproperties_t">
|
||||
</xs:complexType>
|
||||
|
||||
<xs:complexType name="computedproperty_t"></xs:complexType>
|
||||
|
||||
|
||||
<xs:complexType name="interval_t">
|
||||
<xs:sequence>
|
||||
<xs:element name="min" type="xs:positiveInteger" maxOccurs="1" minOccurs="1"></xs:element>
|
||||
<xs:element name="max" type="xs:positiveInteger" maxOccurs="1" minOccurs="1"></xs:element>
|
||||
</xs:sequence>
|
||||
</xs:complexType>
|
||||
</xs:schema>
|
||||
Vendored
+730
@@ -0,0 +1,730 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<obimetabarcodedb xmlns="http://metabarcoding.org/OBIMetabarcodes" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:mods="http://www.loc.gov/mods/v3" xsi:schemaLocation="http://metabarcoding.org/OBIMetabarcodes OBIMetabarcodes.xsd">
|
||||
<metadata>
|
||||
<loci>
|
||||
<abstractlocus ID="LO.RRNA">
|
||||
<name>mRNA</name>
|
||||
</abstractlocus>
|
||||
<abstractlocus ID="LO.MRRNA">
|
||||
<name>Mitochondrial mRNA</name>
|
||||
<partof>LO.RRNA</partof>
|
||||
</abstractlocus>
|
||||
<abstractlocus ID="LO.ITS">
|
||||
<name>Internal Transcribed Spacer (ITS)</name>
|
||||
</abstractlocus>
|
||||
<locus ID="LO.M16SRRNA">
|
||||
<name>16S rRNA</name>
|
||||
<partof>LO.MRRNA</partof>
|
||||
<organelle>mitochondria</organelle>
|
||||
</locus>
|
||||
<locus ID="LO.M12SRRNA">
|
||||
<name>12S rRNA</name>
|
||||
<partof>LO.MRRNA</partof>
|
||||
<organelle>mitochondria</organelle>
|
||||
</locus>
|
||||
<locus ID="LO.P6_LOOP">
|
||||
<name>P6-Loop trnL</name>
|
||||
<organelle>chloroplast</organelle>
|
||||
</locus>
|
||||
<locus ID="LO.ITS1">
|
||||
<name>ITS1</name>
|
||||
<partof>LO.ITS</partof>
|
||||
<organelle>nucleus</organelle>
|
||||
</locus>
|
||||
</loci>
|
||||
</metadata>
|
||||
<taxonomy>
|
||||
<root ID="TX.1">
|
||||
<name>Root</name>
|
||||
<rank>no rank</rank>
|
||||
</root><taxon ID="TX.2759"><name>Eukaryota</name><rank>superkingdom</rank><partof>TX.131567</partof></taxon><taxon ID="TX.3193"><name>Embryophyta</name><rank>no rank</rank><partof>TX.131221</partof></taxon><taxon ID="TX.3208"><name>Bryophyta</name><rank>no rank</rank><partof>TX.3193</partof></taxon><taxon ID="TX.4751"><name>Fungi</name><rank>kingdom</rank><partof>TX.33154</partof></taxon><taxon ID="TX.6072"><name>Eumetazoa</name><rank>no rank</rank><partof>TX.33208</partof></taxon><taxon ID="TX.6340"><name>Annelida</name><rank>phylum</rank><partof>TX.193545</partof></taxon><taxon ID="TX.6381"><name>Oligochaeta</name><rank>subclass</rank><partof>TX.42113</partof></taxon><taxon ID="TX.6382"><name>Haplotaxida</name><rank>order</rank><partof>TX.6381</partof></taxon><taxon ID="TX.6383"><name>Tubificina</name><rank>suborder</rank><partof>TX.6382</partof></taxon><taxon ID="TX.6388"><name>Enchytraeidae</name><rank>family</rank><partof>TX.6383</partof></taxon><taxon ID="TX.6656"><name>Arthropoda</name><rank>phylum</rank><partof>TX.88770</partof></taxon><taxon ID="TX.6960"><name>Hexapoda</name><rank>superclass</rank><partof>TX.197562</partof></taxon><taxon ID="TX.7041"><name>Coleoptera</name><rank>order</rank><partof>TX.33392</partof></taxon><taxon ID="TX.7496"><name>Pterygota</name><rank>no rank</rank><partof>TX.85512</partof></taxon><taxon ID="TX.7711"><name>Chordata</name><rank>phylum</rank><partof>TX.33511</partof></taxon><taxon ID="TX.7742"><name>Vertebrata</name><rank>no rank</rank><partof>TX.89593</partof></taxon><taxon ID="TX.7776"><name>Gnathostomata</name><rank>superclass</rank><partof>TX.7742</partof></taxon><taxon ID="TX.8287"><name>Sarcopterygii</name><rank>no rank</rank><partof>TX.117571</partof></taxon><taxon ID="TX.8457"><name>Sauropsida</name><rank>no rank</rank><partof>TX.32524</partof></taxon><taxon ID="TX.8492"><name>Archosauria</name><rank>no rank</rank><partof>TX.32561</partof></taxon><taxon ID="TX.8782"><name>Aves</name><rank>class</rank><partof>TX.436492</partof></taxon><taxon ID="TX.32523"><name>Tetrapoda</name><rank>no rank</rank><partof>TX.8287</partof></taxon><taxon ID="TX.32524"><name>Amniota</name><rank>no rank</rank><partof>TX.32523</partof></taxon><taxon ID="TX.32561"><name>Sauria</name><rank>no rank</rank><partof>TX.8457</partof></taxon><taxon ID="TX.33090"><name>Viridiplantae</name><rank>kingdom</rank><partof>TX.2759</partof></taxon><taxon ID="TX.33154"><name>Opisthokonta</name><rank>no rank</rank><partof>TX.2759</partof></taxon><taxon ID="TX.33208"><name>Metazoa</name><rank>kingdom</rank><partof>TX.33154</partof></taxon><taxon ID="TX.33213"><name>Bilateria</name><rank>no rank</rank><partof>TX.6072</partof></taxon><taxon ID="TX.33316"><name>Coelomata</name><rank>no rank</rank><partof>TX.33213</partof></taxon><taxon ID="TX.33317"><name>Protostomia</name><rank>no rank</rank><partof>TX.33316</partof></taxon><taxon ID="TX.33340"><name>Neoptera</name><rank>subclass</rank><partof>TX.7496</partof></taxon><taxon ID="TX.33392"><name>Endopterygota</name><rank>infraclass</rank><partof>TX.33340</partof></taxon><taxon ID="TX.33511"><name>Deuterostomia</name><rank>no rank</rank><partof>TX.33316</partof></taxon><taxon ID="TX.35493"><name>Streptophyta</name><rank>phylum</rank><partof>TX.33090</partof></taxon><taxon ID="TX.42113"><name>Clitellata</name><rank>no rank</rank><partof>TX.6340</partof></taxon><taxon ID="TX.50557"><name>Insecta</name><rank>class</rank><partof>TX.6960</partof></taxon><taxon ID="TX.85512"><name>Dicondylia</name><rank>no rank</rank><partof>TX.50557</partof></taxon><taxon ID="TX.88770"><name>Panarthropoda</name><rank>no rank</rank><partof>TX.33317</partof></taxon><taxon ID="TX.89593"><name>Craniata</name><rank>subphylum</rank><partof>TX.7711</partof></taxon><taxon ID="TX.117570"><name>Teleostomi</name><rank>no rank</rank><partof>TX.7776</partof></taxon><taxon ID="TX.117571"><name>Euteleostomi</name><rank>no rank</rank><partof>TX.117570</partof></taxon><taxon ID="TX.131221"><name>Streptophytina</name><rank>no rank</rank><partof>TX.35493</partof></taxon><taxon ID="TX.131567"><name>cellular organisms</name><rank>no rank</rank><partof>TX.1</partof></taxon><taxon ID="TX.193545"><name>Annelida/Echiura/Pogonophora group</name><rank>no rank</rank><partof>TX.33317</partof></taxon><taxon ID="TX.197562"><name>Pancrustacea</name><rank>no rank</rank><partof>TX.197563</partof></taxon><taxon ID="TX.197563"><name>Mandibulata</name><rank>no rank</rank><partof>TX.6656</partof></taxon><taxon ID="TX.436486"><name>Dinosauria</name><rank>no rank</rank><partof>TX.8492</partof></taxon><taxon ID="TX.436489"><name>Saurischia</name><rank>no rank</rank><partof>TX.436486</partof></taxon><taxon ID="TX.436491"><name>Theropoda</name><rank>no rank</rank><partof>TX.436489</partof></taxon><taxon ID="TX.436492"><name>Coelurosauria</name><rank>no rank</rank><partof>TX.436491</partof></taxon></taxonomy>
|
||||
<primers>
|
||||
<primer ID="PR.G">
|
||||
<name>G</name>
|
||||
<sequence>GGGCAATCCTGAGCCAA</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.H">
|
||||
<name>H</name>
|
||||
<sequence>CCATTGAGTCTCTGCACCTATC</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.ITS5">
|
||||
<name>ITS5</name>
|
||||
<sequence>GGAAGTAAAAGTCGTAACAAGG</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.58S_FUNGI">
|
||||
<name>5.8S_fungi</name>
|
||||
<sequence>CAAGAGATCCGTTGTTGAAAGTT</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.BRYO_P6F">
|
||||
<name>bryo_P6F</name>
|
||||
<sequence>GATTCAGGGAAACTTAGGTTG</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.BRYO_P6R">
|
||||
<name>bryo_P6R</name>
|
||||
<sequence>CCATTGAGTCTCTGCACC</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.ENCH_12SA">
|
||||
<name>Ench_12Sa</name>
|
||||
<sequence>GCTGCACTTTGACTTGAC</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.ENCH_12SC">
|
||||
<name>Ench_12Sc</name>
|
||||
<sequence>AGCCTGTGTACTGCTGTC</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.COLEOP_16SC">
|
||||
<name>Coleop_16Sc</name>
|
||||
<sequence>TGCAAAGGTAGCATAATMATTAG</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.COLEOP_16SD">
|
||||
<name>Coleop_16Sd</name>
|
||||
<sequence>TCCATAGGGTCTTCTCGTC</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.AVES_12SA">
|
||||
<name>Aves_12Sa</name>
|
||||
<sequence>GATTAGATACCCCACTATGC</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
<primer ID="PR.AVES_12SC">
|
||||
<name>Aves_12Sc</name>
|
||||
<sequence>GTTTTAAGCGTTTGTGCTCG</sequence>
|
||||
<coding>false</coding>
|
||||
</primer>
|
||||
</primers>
|
||||
<metabarcodes>
|
||||
<metabarcode ID="MB.GH_P6_LOOP">
|
||||
<name>GH</name>
|
||||
<locus>LO.P6_LOOP</locus>
|
||||
<forward>PR.G</forward>
|
||||
<reverse>PR.H</reverse>
|
||||
<targettaxon>TX.35493</targettaxon>
|
||||
<targetlength>
|
||||
<min>8</min>
|
||||
<max>150</max>
|
||||
</targetlength>
|
||||
<references>
|
||||
<describedin biblioid="BI.TABERLET_07_00"/>
|
||||
<usedin biblioid="BI.YOCCOZ_12_00"/>
|
||||
</references>
|
||||
</metabarcode>
|
||||
<metabarcode ID="MB.FUNGI_ITS1">
|
||||
<name>Fungi_ITS1</name>
|
||||
<locus>LO.ITS1</locus>
|
||||
<forward>PR.ITS5</forward>
|
||||
<reverse>PR.58S_FUNGI</reverse>
|
||||
<targettaxon>TX.4751</targettaxon>
|
||||
<references>
|
||||
<describedin>BI.BELLEMAIN_10_00</describedin>
|
||||
<usedin>BI.EPP_12_00</usedin></references>
|
||||
</metabarcode>
|
||||
<metabarcode ID="MB.BRYO_P6_LOOP">
|
||||
<name>Bryophytes_GH</name>
|
||||
<locus>LO.P6_LOOP</locus>
|
||||
<forward>PR.BRYO_P6F</forward>
|
||||
<reverse>PR.BRYO_P6R</reverse>
|
||||
<targettaxon>TX.3208</targettaxon>
|
||||
<references>
|
||||
<describedin>BI.EPP_12_00</describedin></references>
|
||||
</metabarcode>
|
||||
<metabarcode ID="MB.ENCH_12S">
|
||||
<name>Enchytraeids_12S</name>
|
||||
<locus>LO.M12SRRNA</locus>
|
||||
<forward>PR.ENCH_12SA</forward>
|
||||
<reverse>PR.ENCH_12SC</reverse>
|
||||
<targettaxon>TX.6388</targettaxon>
|
||||
<references>
|
||||
<describedin>BI.EPP_12_00</describedin></references>
|
||||
</metabarcode>
|
||||
<metabarcode ID="MB.COLEO_16S">
|
||||
<name>Coleopters_16S</name>
|
||||
<locus>LO.M16SRRNA</locus>
|
||||
<forward>PR.COLEOP_16SC</forward>
|
||||
<reverse>PR.COLEOP_16SD</reverse>
|
||||
<targettaxon>TX.7041</targettaxon>
|
||||
<references>
|
||||
<describedin>BI.EPP_12_00</describedin></references>
|
||||
</metabarcode>
|
||||
<metabarcode ID="MB.AVES_12S">
|
||||
<name>Birds_12S</name>
|
||||
<locus>LO.M12SRRNA</locus>
|
||||
<forward>PR.AVES_12SA</forward>
|
||||
<reverse>PR.AVES_12SC</reverse>
|
||||
<targettaxon>TX.8782</targettaxon>
|
||||
<references>
|
||||
<describedin>BI.EPP_12_00</describedin></references>
|
||||
</metabarcode>
|
||||
</metabarcodes>
|
||||
<bibliography>
|
||||
<mods:mods ID="BI.TABERLET_07_00">
|
||||
<mods:titleInfo>
|
||||
<mods:title>Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding.</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Pierre</mods:namePart>
|
||||
<mods:namePart type="family">Taberlet</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Eric</mods:namePart>
|
||||
<mods:namePart type="family">Coissac</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Francois</mods:namePart>
|
||||
<mods:namePart type="family">Pompanon</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Ludovic</mods:namePart>
|
||||
<mods:namePart type="family">Gielly</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Christian</mods:namePart>
|
||||
<mods:namePart type="family">Miquel</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
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|
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||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Håvard</mods:namePart>
|
||||
<mods:namePart type="family">Kauserud</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Nigel</mods:namePart>
|
||||
<mods:namePart type="given">G</mods:namePart>
|
||||
<mods:namePart type="family">Yoccoz</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Kari</mods:namePart>
|
||||
<mods:namePart type="given">Anne</mods:namePart>
|
||||
<mods:namePart type="family">Bråthen</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Eske</mods:namePart>
|
||||
<mods:namePart type="family">Willerslev</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Pierre</mods:namePart>
|
||||
<mods:namePart type="family">Taberlet</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Eric</mods:namePart>
|
||||
<mods:namePart type="family">Coissac</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Christian</mods:namePart>
|
||||
<mods:namePart type="family">Brochmann</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:originInfo>
|
||||
<mods:dateIssued>2012-Apr</mods:dateIssued>
|
||||
</mods:originInfo>
|
||||
<mods:typeOfResource>text</mods:typeOfResource>
|
||||
<mods:genre>journal article</mods:genre>
|
||||
<mods:relatedItem type="host">
|
||||
<mods:titleInfo>
|
||||
<mods:title>Molecular Ecology</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:originInfo>
|
||||
<mods:issuance>continuing</mods:issuance>
|
||||
</mods:originInfo>
|
||||
<mods:genre authority="marcgt">periodical</mods:genre>
|
||||
<mods:genre>academic journal</mods:genre>
|
||||
</mods:relatedItem>
|
||||
<mods:identifier type="citekey">Epp:12:00</mods:identifier>
|
||||
<mods:part>
|
||||
<mods:date>2012-Apr</mods:date>
|
||||
<mods:detail type="volume">
|
||||
<mods:number>21</mods:number>
|
||||
</mods:detail>
|
||||
<mods:detail type="issue">
|
||||
<mods:number>8</mods:number>
|
||||
</mods:detail>
|
||||
<mods:extent unit="page">
|
||||
<mods:start>1821</mods:start>
|
||||
<mods:end>1833</mods:end>
|
||||
</mods:extent>
|
||||
</mods:part>
|
||||
</mods:mods>
|
||||
<mods:mods xmlns:mods="http://www.loc.gov/mods/v3" ID="BI.BELLEMAIN_10_00">
|
||||
<mods:titleInfo>
|
||||
<mods:title>ITS as an environmental DNA barcode for fungi</mods:title>
|
||||
<mods:subTitle>an in silico approach reveals potential PCR biases</mods:subTitle>
|
||||
</mods:titleInfo>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Eva</mods:namePart>
|
||||
<mods:namePart type="family">Bellemain</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Tor</mods:namePart>
|
||||
<mods:namePart type="family">Carlsen</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Christian</mods:namePart>
|
||||
<mods:namePart type="family">Brochmann</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Eric</mods:namePart>
|
||||
<mods:namePart type="family">Coissac</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Pierre</mods:namePart>
|
||||
<mods:namePart type="family">Taberlet</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:name type="personal">
|
||||
<mods:namePart type="given">Håvard</mods:namePart>
|
||||
<mods:namePart type="family">Kauserud</mods:namePart>
|
||||
<mods:role>
|
||||
<mods:roleTerm authority="marcrelator" type="text">author</mods:roleTerm>
|
||||
</mods:role>
|
||||
</mods:name>
|
||||
<mods:originInfo>
|
||||
<mods:dateIssued>2010</mods:dateIssued>
|
||||
</mods:originInfo>
|
||||
<mods:typeOfResource>text</mods:typeOfResource>
|
||||
<mods:genre>journal article</mods:genre>
|
||||
<mods:relatedItem type="host">
|
||||
<mods:titleInfo>
|
||||
<mods:title>BMC Microbiology</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:originInfo>
|
||||
<mods:issuance>continuing</mods:issuance>
|
||||
</mods:originInfo>
|
||||
<mods:genre authority="marcgt">periodical</mods:genre>
|
||||
<mods:genre>academic journal</mods:genre>
|
||||
</mods:relatedItem>
|
||||
<mods:identifier type="citekey">Bellemain:10:00</mods:identifier>
|
||||
<mods:part>
|
||||
<mods:date>2010</mods:date>
|
||||
<mods:detail type="volume"><mods:number>10</mods:number></mods:detail>
|
||||
<mods:detail type="page"><mods:number>189</mods:number></mods:detail>
|
||||
</mods:part>
|
||||
</mods:mods></bibliography>
|
||||
</obimetabarcodedb>
|
||||
Vendored
+22
@@ -0,0 +1,22 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
|
||||
<obimetabarcodedb
|
||||
xmlns="http://metabarcoding.org/OBIMetabarcodes"
|
||||
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xmlns:mods="http://www.loc.gov/mods/v3"
|
||||
xsi:schemaLocation="http://metabarcoding.org/OBIMetabarcodes OBIMetabarcodes.xsd">
|
||||
<metadata>
|
||||
<loci>
|
||||
</loci>
|
||||
</metadata>
|
||||
<taxonomy>
|
||||
<root ID="TX.1">
|
||||
<name>Root</name>
|
||||
<rank>no rank</rank>
|
||||
</root>
|
||||
</taxonomy>
|
||||
<primers>
|
||||
</primers>
|
||||
<metabarcodes>
|
||||
</metabarcodes>
|
||||
</obimetabarcodedb>
|
||||
Vendored
+1
@@ -0,0 +1 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
<!-- Via XMLSpy. Editor: Ray Denenberg, Library of Congress; rden@loc.gov -->
<xs:schema xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://www.loc.gov/mods/v3" targetNamespace="http://www.loc.gov/mods/v3" elementFormDefault="qualified" attributeFormDefault="unqualified">
<!-- -->
<xs:import namespace="http://www.w3.org/XML/1998/namespace" schemaLocation="http://www.loc.gov/mods/xml.xsd"/>
<xs:import namespace="http://www.w3.org/1999/xlink" schemaLocation="http://www.loc.gov/standards/xlink/xlink.xsd"/>
<!--
MODS: Metadata Object Description Schema. See http://www.loc.gov/standards/mods/
****************************************************************
*
* MODS 3.5
*
* July 8, 2013
*
*****************************************************************
***************************************************
Changes in version 3.5
1. Reorganization of the schema. To allow a reader to more easily understand the definition of a particular element,
by minimizing the number of places within the schema that the reader must look.
This in itself does not introduce any substantive changes.
2. Add attribute @unit to <extent> of <physicalDescription> ( @unit is already defined for <extent> of <part>).
3. Add value 'rfc5646' to the enumerated list of values for the authority attribute for languageTerm.
4. Define attributes @altFormat and @contentType attributes for <abstract>, <accessCondition>, <tableOfContents> and <titleInfo>.
5. Define attribute @eventType for <originInfo> (recomended values 'production', 'publication', 'distribution', 'manufacture').
6. Define attribute @typeURI for <identifier> and <note> (including <physicalDescription><note>).
7. Define attribute @generator for <classification>.
8. Define element <etal>, a subelement of <name>.
9. Define attribute @otherType for <titleInfo>.
*********************************************************************************************
*************************************
Organization of this schema
*************************************
The schema has three parts:
1. Structural declarations and definitions
2. Elements (top level elements and their subelements)
3. Auxiliary Definitions
***********************************************************************
***********************************************************************
Part 1: Structural Declarations and Definitions
***********************************************************************
***********************************************************************
- Definition of a single MODS record and a MODS collection
- modsGroup, listing the top level MODS elements
***********************************************************************
** Definition of a single MODS record **
**********************************************************************
-->
<xs:element name="mods" type="modsDefinition"/>
<!-- -->
<xs:complexType name="modsDefinition">
<xs:group ref="modsGroup" maxOccurs="unbounded"/>
<xs:attribute name="ID" type="xs:ID"/>
<xs:attribute name="version">
<xs:simpleType>
<xs:restriction base="xs:string">
<xs:enumeration value="3.5"/>
<xs:enumeration value="3.4"/>
<xs:enumeration value="3.3"/>
<xs:enumeration value="3.2"/>
<xs:enumeration value="3.1"/>
<xs:enumeration value="3.0"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
</xs:complexType>
<!--
***********************************************************************
** Definition of a MODS collection **
**********************************************************************
-->
<xs:element name="modsCollection" type="modsCollectionDefinition"/>
<!-- -->
<xs:complexType name="modsCollectionDefinition">
<xs:sequence>
<xs:element ref="mods" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<!--
************************************************
** Group Definition
***********************************************
This forms the basis of the mods record definition, and also relatedItem. The difference between a MODS record and a relatedItem
(as they pertain to their usage of the group definition) is that mods requires at least one element and relatedItem does not.
The group definition is used by both, where relatedItem says minOccursLine truncated
|
||||
Vendored
+24
@@ -0,0 +1,24 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
|
||||
<obimetabarcodedb
|
||||
xmlns="http://metabarcoding.org/OBIMetabarcodes"
|
||||
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xmlns:mods="http://www.loc.gov/mods/v3"
|
||||
xsi:schemaLocation="http://metabarcoding.org/OBIMetabarcodes OBIMetabarcodes.xsd">
|
||||
<metadata>
|
||||
<loci>
|
||||
</loci>
|
||||
</metadata>
|
||||
<taxonomy>
|
||||
<root ID="TX.1">
|
||||
<name>Root</name>
|
||||
<rank>no rank</rank>
|
||||
</root>
|
||||
</taxonomy>
|
||||
<primers>
|
||||
</primers>
|
||||
<metabarcodes>
|
||||
</metabarcodes>
|
||||
<bibliography>
|
||||
</bibliography>
|
||||
</obimetabarcodedb>
|
||||
Vendored
+9
@@ -0,0 +1,9 @@
|
||||
|
||||
@article{Taberlet:07:00,
|
||||
Author = {Taberlet, Pierre and Coissac, E and Pompanon, Francois and Gielly, Ludovic and Miquel, Christian and Valentini, Alice and Vermat, Thierry and Corthier, Gerard and Brochmann, Christian and Willerslev, Eske},
|
||||
Journal = {Nucleic Acids Res},
|
||||
Number = {3},
|
||||
Pages = {e14},
|
||||
Title = {Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding.},
|
||||
Volume = {35},
|
||||
Year = {2007}}
|
||||
Vendored
+100
@@ -0,0 +1,100 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<modsCollection xmlns="http://www.loc.gov/mods/v3">
|
||||
<mods ID="Taberlet:07:00">
|
||||
<titleInfo>
|
||||
<title>Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding.</title>
|
||||
</titleInfo>
|
||||
<name type="personal">
|
||||
<namePart type="given">Pierre</namePart>
|
||||
<namePart type="family">Taberlet</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">E</namePart>
|
||||
<namePart type="family">Coissac</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Francois</namePart>
|
||||
<namePart type="family">Pompanon</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Ludovic</namePart>
|
||||
<namePart type="family">Gielly</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Christian</namePart>
|
||||
<namePart type="family">Miquel</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Alice</namePart>
|
||||
<namePart type="family">Valentini</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Thierry</namePart>
|
||||
<namePart type="family">Vermat</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Gerard</namePart>
|
||||
<namePart type="family">Corthier</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Christian</namePart>
|
||||
<namePart type="family">Brochmann</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<name type="personal">
|
||||
<namePart type="given">Eske</namePart>
|
||||
<namePart type="family">Willerslev</namePart>
|
||||
<role>
|
||||
<roleTerm authority="marcrelator" type="text">author</roleTerm>
|
||||
</role>
|
||||
</name>
|
||||
<originInfo>
|
||||
<dateIssued>2007</dateIssued>
|
||||
</originInfo>
|
||||
<typeOfResource>text</typeOfResource>
|
||||
<genre>journal article</genre>
|
||||
<relatedItem type="host">
|
||||
<titleInfo>
|
||||
<title>Nucleic Acids Res</title>
|
||||
</titleInfo>
|
||||
<originInfo>
|
||||
<issuance>continuing</issuance>
|
||||
</originInfo>
|
||||
<genre authority="marcgt">periodical</genre>
|
||||
<genre>academic journal</genre>
|
||||
</relatedItem>
|
||||
<identifier type="citekey">Taberlet:07:00</identifier>
|
||||
<part>
|
||||
<date>2007</date>
|
||||
<detail type="volume"><number>35</number></detail>
|
||||
<detail type="issue"><number>3</number></detail>
|
||||
<detail type="page"><number>e14</number></detail>
|
||||
</part>
|
||||
</mods>
|
||||
</modsCollection>
|
||||
Vendored
+10
@@ -0,0 +1,10 @@
|
||||
|
||||
@article{Yoccoz:12:00,
|
||||
Author = {Yoccoz, N G and Br{\aa}then, K A and Gielly, L and Haile, J and Edwards, M E and Goslar, T and Von Stedingk, H and Brysting, A K and Coissac, E and Pompanon, F and S{\o}nsteb{\o}, J H and Miquel, C and Valentini, A and De Bello, F and Chave, J and Thuiller, W and Wincker, P and Cruaud, C and Gavory, F and Rasmussen, M and Gilbert, M T P and Orlando, L and Brochmann, C and Willerslev, E and Taberlet, P},
|
||||
Journal = {Mol Ecol},
|
||||
Month = {Aug},
|
||||
Number = {15},
|
||||
Pages = {3647-55},
|
||||
Title = {DNA from soil mirrors plant taxonomic and growth form diversity},
|
||||
Volume = {21},
|
||||
Year = {2012}}
|
||||
Reference in new issue
Block a user