Commit the man pages and make aggregate public again

man/dist.clique.group.Rd

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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/mstat.R
+\name{dist.clique.group}
+\alias{dist.clique.group}
+\title{Builds the list of sample groups including samples closest than a define distance}
+\usage{
+dist.clique.group(dtable, dmax, center = True)
+}
+\arguments{
+\item{dtable}{a distance table between samples as 
+computed by \code{\link{dist.grid}}}
+
+\item{dmax}{the maximum distance between two samples}
+}
+\value{
+a list of vectors containing the labels of the group members
+}
+\description{
+A graph is build by applying the threshold \code{dmax} to the distance matrix
+A group is a clique max in this graph. Consequently all member pairs of a group
+are distant by less or equal to \code{dmax}.
+}
+\examples{
+data(termes)
+termes.ok = termes[,colSums(termes$reads)>0]
+pos = expand.grid(1:3 * 10,1:7 * 10)
+labels = rownames(termes.ok)
+d = dist.grid(pos[,1],pos[2],labels)
+groups = dist.clique.group(d,20)
+
+}