Commit the man pages and make aggregate public again

man/import.metabarcoding.data.Rd

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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/import.metabarcoding.R
+\name{import.metabarcoding.data}
+\alias{import.metabarcoding.data}
+\title{Read a data file produced by the \code{obitab} command}
+\usage{
+import.metabarcoding.data(file, sep = "\\t", sample = "sample",
+  sample.sep = "\\\\.", attribute = ":")
+}
+\arguments{
+\item{file}{a string containing the file name of the obitab file.}
+
+\item{sep}{Column separator in the obitab file. 
+The default separator is the tabulation.}
+
+\item{sample}{A regular expression allowing to identify columns 
+from the file describing abundances of sequences per sample}
+
+\item{sample.sep}{Separator between combined sample name.}
+
+\item{attribute}{Separator used to split between sample 'tag' and sample name.}
+}
+\value{
+a \code{\link{metabarcoding.data}} instance
+}
+\description{
+Read a data file issued from the conversion of a \strong{fasta} 
+file to a tabular file by the \code{obitab} command of the 
+\strong{OBITools} package
+}
+\examples{
+require(ROBITools)
+
+\dontshow{# switch the working directory to the data package directory}
+\dontshow{setwd(system.file("extdata", package="ROBITools"))}
+
+# read the termes.tab file
+termes=import.metabarcoding.data('termes.tab')
+
+# print the number of samples and motus described in the file
+dim(termes)
+  
+}
+\seealso{
+\code{\link{metabarcoding.data}}
+}
+\author{
+Eric Coissac
+}
+\keyword{DNA}
+\keyword{metabarcoding}