Commit the man pages and make aggregate public again

man/import.ngsfilter.data.Rd

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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/import.ngsfilter.R
+\name{import.ngsfilter.data}
+\alias{import.ngsfilter.data}
+\title{Read ngsfilter text file}
+\usage{
+import.ngsfilter.data(file, platewell = NULL)
+}
+\arguments{
+\item{file}{a string containing the file name for the \code{ngsfilter} command.}
+
+\item{platewell}{a string corresponding to the tag used for storing the sample location
+in the PCR plate. Should be of the form "nbPlate_Well" (e.g. "01_A02").
+Default is \code{NULL}}
+}
+\value{
+\code{\link{import.ngsfilter.data}} returns a \code{\link{data.frame}} instance
+}
+\description{
+Reads  the text file used for assigning reads to samples with the
+ \code{ngsfilter} command of the \strong{OBITools} package.
+}
+\examples{
+\dontshow{# switch the working directory to the data package directory}
+\dontshow{setwd(system.file("extdata", package="ROBITools"))}
+
+data(termes)
+
+# reading the termes_ngsfilt.txt file
+termes.ngs=import.ngsfilter.data('termes_ngsfilt.txt', platewell="position")
+
+# including ngsfilter data into termes data
+attr(termes, "samples") = termes.ngs[rownames(termes),]
+
+colnames(termes$samples)
+  
+}
+\seealso{
+\code{\link{import.metabarcoding.data}} and \code{\link{read.obitab}} for other methods of data importation
+}
+\author{
+Lucie Zinger
+}
+\keyword{DNA}
+\keyword{metabarcoding}