Commit the man pages and make aggregate public again

man/m.univariate.Rd

@@ -0,0 +1,41 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/mstat.R
+\name{m.univariate}
+\alias{m.univariate}
+\title{Computes the univariate M statistics}
+\usage{
+m.univariate(w, groups)
+}
+\arguments{
+\item{w}{the weigth matrix indicating the presence probability of each motu
+in each samples. Each line corresponds to a sample and each column
+to a MOTU. \code{rownames} of the \code{w} matrix must be the sample
+names.  It is nice but not mandatory if the \code{colnames} refer to the MOTU id.}
+
+\item{groups}{the list of considered groups as computed by the \code{\link{dist.center.group}}
+function}
+}
+\description{
+Computes the univariate M statistics
+}
+\examples{
+data(termes)
+termes.ok = termes[,colSums(termes$reads)>0]
+pos = expand.grid(1:3 * 10,1:7 * 10)
+labels = rownames(termes.ok)
+d = dist.grid(pos[,1],pos[2],labels)
+groups = dist.center.group(d,20)
+w = m.weight(termes.ok)
+m = m.univariate(w,groups)
+
+}
+\references{
+Marcon, E., Puech, F., and Traissac, S. (2012). 
+            Characterizing the relative spatial structure of point patterns. 
+            International Journal of Ecology, 2012.
+}
+\seealso{
+\code{\link{dist.center.group}}
+
+\code{\link{m.weight}}
+}