Commit the man pages and make aggregate public again

man/read-methods.Rd

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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/02_class_metabarcoding.data.R
+\docType{methods}
+\name{reads,metabarcoding.data-method}
+\alias{reads,metabarcoding.data-method}
+\alias{read-methods,metabarcoding.data}
+\title{Extracts the matrix describing MOTUs abondances}
+\usage{
+\S4method{reads}{metabarcoding.data}(obj)
+}
+\arguments{
+\item{obj}{a \code{\link{metabarcoding.data}} instance}
+}
+\value{
+a matrix containing data about reads
+}
+\description{
+Extract the the matrix describing MOTUs abondances (read counts) 
+from a \code{\link{metabarcoding.data}} instance.
+}
+\examples{
+# load termite data set from the ROBITools sample data
+data(termes)
+
+# Extract the matrix describing MOTUs abondances
+d = reads(termes)
+
+head(d)
+
+}
+\seealso{
+\code{\link{metabarcoding.data}},
+         \code{\link{motus}}, \code{\link{samples}}
+}
+\author{
+Eric Coissac
+}