obitools/obitools
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Eric Coissac
2010-01-05 23:37:54 +00:00
parent dd6a6d6dd1
commit f890e99868
1 changed files with 2 additions and 0 deletions
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src/obitools/sequenceencoder/__init__.py
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@@ -11,6 +11,7 @@ class DNAComplementEncoder(SequenceEncoder):
'-': '-'} '-': '-'}
_info={'complemented':True} _info={'complemented':True}
_eval={'complemented':True}
@staticmethod @staticmethod
def _encode(seq,position=slice(None, None, -1)): def _encode(seq,position=slice(None, None, -1)):
@@ -43,6 +44,7 @@ class SeqFragmentEncoder(SequenceEncoder):
assert begin < end and begin >=0 assert begin < end and begin >=0
self._limits = slice(begin,end) self._limits = slice(begin,end)
self._info = {'cut' : [begin,end,1]} self._info = {'cut' : [begin,end,1]}
self._eval = {'cut' : True}
self._len = end - begin + 1 self._len = end - begin + 1
def _check(self,seq): def _check(self,seq):