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6e89e28056
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force reading of sequences as nucleic sequences
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2008-10-03 08:05:09 +00:00 |
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33223ea5aa
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patch on bioseqEditTags
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2008-10-01 16:08:16 +00:00 |
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a89ab2481b
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remove old tools fastaAddTag and fastaRenameTag
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2008-10-01 15:35:45 +00:00 |
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46cb6e759a
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add fastaEditTag tool
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2008-10-01 15:33:00 +00:00 |
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2665d987a2
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Allow usage of iupac dna code in tagMatcher file reader
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2008-09-04 15:38:51 +00:00 |
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3106f29954
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2008-09-04 15:24:17 +00:00 |
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1fe95f889d
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script used to filter tagmatcher output file
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2008-09-02 14:07:13 +00:00 |
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0b9714ec7b
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Add reading and writing function for datafile in TagMatcher format
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2008-09-02 14:06:15 +00:00 |
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665cd722db
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add dnaparser sub module
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2008-07-25 14:54:27 +00:00 |
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b3d98ab717
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Add a writer for ecoPCRFile
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2008-07-11 06:13:40 +00:00 |
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a2966156dc
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2008-07-07 15:09:50 +00:00 |
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dc4ea3686a
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2008-07-07 15:09:29 +00:00 |
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83e9e31bf2
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Add embl reader
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2008-06-30 10:24:02 +00:00 |
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a22b9f8e0d
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refactor the fasta reader
add getGloc method to Location class
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2008-06-30 10:22:15 +00:00 |
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5391028ec8
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Patch bug in subseq
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2008-06-23 14:20:32 +00:00 |
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1f035b38bc
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2008-06-09 14:04:45 +00:00 |
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82cf928d87
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2008-06-09 14:03:45 +00:00 |
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6a8bacd693
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2008-06-09 14:03:08 +00:00 |
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54958ba992
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2008-06-09 14:02:54 +00:00 |
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dff5c86be8
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Bug correction on fastaGrep.py
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2008-06-02 10:19:34 +00:00 |
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d5fbfa6e50
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2008-06-02 10:02:43 +00:00 |
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0bf1761df6
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New script to preprocess CNS 454 file
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2008-06-02 10:01:57 +00:00 |
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976bf74dc2
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New script to split a fasta database in several files
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2008-06-02 10:00:57 +00:00 |
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4c47130328
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Add filtering option on subject coverage (-C)
Add option for printing sequence (-o)
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2008-06-02 09:59:10 +00:00 |
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b92032560c
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add begin and end attributes to locations
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2008-05-06 14:18:27 +00:00 |
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e775801a37
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remplace le print par un debug()
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2008-05-05 10:12:40 +00:00 |
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ba64835bcc
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Doc API
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2008-04-29 11:08:17 +00:00 |
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cba960a9d3
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Doc API
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2008-04-29 11:07:08 +00:00 |
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d090e11d12
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Add solexa reader
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2008-04-29 11:05:41 +00:00 |
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89ea37b559
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2008-04-28 07:50:13 +00:00 |
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251b88bf1e
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patch for negative shift
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2008-04-16 08:09:37 +00:00 |
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82e1778714
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New version of the api documentation
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2008-04-15 16:58:36 +00:00 |
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eabe06f11b
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modify option in epydoc
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2008-04-15 16:45:31 +00:00 |
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378ec0e472
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New version of the api documentation
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2008-04-15 16:44:44 +00:00 |
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83f38dfa22
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Correction of docstrings
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2008-04-15 16:42:42 +00:00 |
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142b1c2e0f
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fastaUniq uses uniqSequence method
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2008-04-15 16:20:11 +00:00 |
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740e23888a
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add ace2fasta.py script
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2008-04-15 16:19:07 +00:00 |
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225f0e795e
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Add new module to manage alignment <<preliminary version>>
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2008-04-15 16:18:10 +00:00 |
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50a25e1396
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modify run method return
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2008-04-15 16:17:18 +00:00 |
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ec437f9377
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add findRankByName method to Taxonomy class
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2008-04-15 16:15:59 +00:00 |
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1bf519a8d8
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extract parsing of description from fasta parsing
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2008-04-15 16:14:33 +00:00 |
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3b4eef7f45
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Add unique and sort option to ecoTag
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2008-04-15 16:13:41 +00:00 |
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dcf8bbffcb
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swith utils to package
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2008-04-14 15:12:33 +00:00 |
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594a208165
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Add a gzip module allowing to work on stream
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2008-04-10 10:07:22 +00:00 |
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2fbb894412
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Add a -x option to the ecoTag.py script
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2008-04-10 10:00:11 +00:00 |
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b7e93c475c
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2008-04-09 16:59:27 +00:00 |
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b742c605b5
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dans utils.py : obitools.gzip ==> gzip
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2008-04-09 09:46:47 +00:00 |
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de2ccb6415
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parser OBO commenté
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2008-04-08 16:04:04 +00:00 |
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52196563db
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New API documentation generation
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2008-04-08 15:18:28 +00:00 |
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63000f3cd5
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add extra function used mainly in obo parser
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2008-04-08 15:15:43 +00:00 |
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