obitools4/cmd/obitools/obicsv/main.go

package main

import (
	"os"

	"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
	"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
	"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obicsv"
	"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)

func main() {
	optionParser := obioptions.GenerateOptionParser(
		"obicsv",
		"converts sequence files to CSV format",
		obicsv.OptionSet)

	_, args := optionParser(os.Args)

	fs, err := obiconvert.CLIReadBioSequences(args...)
	obiconvert.OpenSequenceDataErrorMessage(args, err)

	obicsv.CLIWriteSequenceCSV(fs, true)

	obiutils.WaitForLastPipe()

}