obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2026-03-26 14:00:51 +00:00
Code Issues Packages Projects Releases Wiki Activity

Add obiminion first version

Browse Source 
Former-commit-id: aa5ace7bd4d2266333715fca7094d1c3cbbb5e6d
This commit is contained in:
Eric Coissac
2024-05-14 08:16:12 +02:00
parent 9e63013bc2
commit 017030bcce
24 changed files with 1599 additions and 469 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
pkg/obitools/obirefidx/obirefidx.go
View File

@@ -63,7 +63,7 @@ func IndexSequence(seqidx int,
if lca[order] == ancestor {
// nseq[i]++
if mini != -1 {
wordmin = obiutils.MaxInt(sequence.Len(), references[order].Len()) - 3 - 4*mini
wordmin = obiutils.Max(sequence.Len(), references[order].Len()) - 3 - 4*mini
}
if cw[order] < wordmin {
@@ -189,7 +189,7 @@ func IndexReferenceDB(iterator obiiter.IBioSequence) obiiter.IBioSequence {
indexed := obiiter.MakeIBioSequence()
go func() {
for i := 0; i < len(references); i += 10 {
limits <- [2]int{i, obiutils.MinInt(i+10, len(references))}
limits <- [2]int{i, obiutils.Min(i+10, len(references))}
}
close(limits)
}()