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Refactoring related to iterators

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This commit is contained in:
Eric Coissac
2022-11-16 17:13:03 +01:00
parent 6f853da9df
commit 09fc426b67
29 changed files with 95 additions and 93 deletions
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6
pkg/obiformats/embl_read.go
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@@ -201,7 +201,7 @@ func _ReadFlatFileChunk(reader io.Reader, readers chan _FileChunk) {
// 6 5 43 2 1
//
// <CR>?<LF>//<CR>?<LF>
func ReadEMBLBatch(reader io.Reader, options ...WithOption) obiiter.IBioSequenceBatch {
func ReadEMBL(reader io.Reader, options ...WithOption) obiiter.IBioSequenceBatch {
opt := MakeOptions(options)
entry_channel := make(chan _FileChunk, opt.BufferSize())
@@ -224,7 +224,7 @@ func ReadEMBLBatch(reader io.Reader, options ...WithOption) obiiter.IBioSequence
return newIter
}
func ReadEMBLBatchFromFile(filename string, options ...WithOption) (obiiter.IBioSequenceBatch, error) {
func ReadEMBLFromFile(filename string, options ...WithOption) (obiiter.IBioSequenceBatch, error) {
var reader io.Reader
var greader io.Reader
var err error
@@ -242,5 +242,5 @@ func ReadEMBLBatchFromFile(filename string, options ...WithOption) (obiiter.IBio
reader = greader
}
return ReadEMBLBatch(reader, options...), nil
return ReadEMBL(reader, options...), nil
}