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Refactoring related to iterators

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This commit is contained in:
Eric Coissac
2022-11-16 17:13:03 +01:00
parent 6f853da9df
commit 09fc426b67
29 changed files with 95 additions and 93 deletions
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4
pkg/obiformats/fastseq_read.go
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@@ -87,7 +87,7 @@ func _FastseqReader(seqfile C.fast_kseq_p,
}
func ReadFastSeqBatchFromFile(filename string, options ...WithOption) (obiiter.IBioSequenceBatch, error) {
func ReadFastSeqFromFile(filename string, options ...WithOption) (obiiter.IBioSequenceBatch, error) {
opt := MakeOptions(options)
name := C.CString(filename)
@@ -132,7 +132,7 @@ func ReadFastSeqBatchFromFile(filename string, options ...WithOption) (obiiter.I
return newIter, err
}
func ReadFastSeqBatchFromStdin(options ...WithOption) obiiter.IBioSequenceBatch {
func ReadFastSeqFromStdin(options ...WithOption) obiiter.IBioSequenceBatch {
opt := MakeOptions(options)
newIter := obiiter.MakeIBioSequenceBatch(opt.BufferSize())