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Refactoring related to iterators

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This commit is contained in:
Eric Coissac
2022-11-16 17:13:03 +01:00
parent 6f853da9df
commit 09fc426b67
29 changed files with 95 additions and 93 deletions
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10
pkg/obiformats/fastseq_write_fastq.go
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@@ -51,7 +51,7 @@ type FileChunck struct {
order int
}
func WriteFastqBatch(iterator obiiter.IBioSequenceBatch,
func WriteFastq(iterator obiiter.IBioSequenceBatch,
file io.Writer,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
opt := MakeOptions(options)
@@ -129,13 +129,13 @@ func WriteFastqBatch(iterator obiiter.IBioSequenceBatch,
return newIter, nil
}
func WriteFastqBatchToStdout(iterator obiiter.IBioSequenceBatch,
func WriteFastqToStdout(iterator obiiter.IBioSequenceBatch,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
options = append(options, OptionDontCloseFile())
return WriteFastqBatch(iterator, os.Stdout, options...)
return WriteFastq(iterator, os.Stdout, options...)
}
func WriteFastqBatchToFile(iterator obiiter.IBioSequenceBatch,
func WriteFastqToFile(iterator obiiter.IBioSequenceBatch,
filename string,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
@@ -148,5 +148,5 @@ func WriteFastqBatchToFile(iterator obiiter.IBioSequenceBatch,
options = append(options, OptionCloseFile())
return WriteFastqBatch(iterator, file, options...)
return WriteFastq(iterator, file, options...)
}