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many changes ;-)

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Former-commit-id: cb4aea844e960e4af4dc673ebc8eec49a7d12b13
This commit is contained in:
Eric Coissac
2023-12-05 15:28:29 +01:00
parent 03bef6461d
commit 0f8066d367
39 changed files with 951797 additions and 198 deletions
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3
pkg/obitools/obilandmark/obilandmark.go
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@@ -124,6 +124,9 @@ func CLISelectLandmarkSequences(iterator obiiter.IBioSequence) obiiter.IBioSeque
}
// classes, centers := obistats.Kmeans(&seqworld, n_landmark, &initialCenters)
classifier := obistats.MakeKmeansClustering(&seqworld, n_landmark, obistats.DefaultRG())
_, centers, inertia, converged := classifier.Run(1000, 0.001)
intertia := classifier.Inertia()
_, centers, inertia, converged := obistats.Kmeans(&seqworld, n_landmark, 0.001, &initialCenters)
dist_centers := 0.0