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Add some code refactoring from the blackboard branch

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This commit is contained in:
Eric Coissac
2024-08-02 12:35:46 +02:00
parent bc1aaaf7d9
commit 1b1cd41fd3
38 changed files with 491 additions and 330 deletions
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4
pkg/obitools/obirefidx/obirefidx.go
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@@ -125,7 +125,7 @@ func IndexSequence(seqidx int,
func IndexReferenceDB(iterator obiiter.IBioSequence) obiiter.IBioSequence {
log.Infoln("Loading database...")
references := iterator.Load()
source, references := iterator.Load()
log.Infof("Done. Database contains %d sequences", len(references))
taxo, error := obifind.CLILoadSelectedTaxonomy()
@@ -204,7 +204,7 @@ func IndexReferenceDB(iterator obiiter.IBioSequence) obiiter.IBioSequence {
sl = append(sl, iref)
bar.Add(1)
}
indexed.Push(obiiter.MakeBioSequenceBatch(l[0]/10, sl))
indexed.Push(obiiter.MakeBioSequenceBatch(source, l[0]/10, sl))
}
indexed.Done()