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Add the possibility to look for patterns allowing indels.

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Former-commit-id: 0599c2b0ad16df086dbdb08e491503870d8904be
This commit is contained in:
Eric Coissac
2023-03-20 15:28:24 +07:00
parent 5fbe52368c
commit 27d6c60e25
14 changed files with 674 additions and 219 deletions
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pkg/obiapat/obiapat.h
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@@ -118,7 +118,7 @@ ecoseq_t *new_ecoseq_with_data( char *AC,
int32_t delete_apatseq(SeqPtr pseq,
int *errno, char **errmsg);
PatternPtr buildPattern(const char *pat, int32_t error_max, int *errno, char **errmsg);
PatternPtr buildPattern(const char *pat, int32_t error_max, uint8_t hasIndel, int *errno, char **errmsg);
PatternPtr complementPattern(PatternPtr pat, int *errno, char **errmsg);
SeqPtr new_apatseq(const char *in,int32_t circular, int32_t seqlen,