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Add a progress bar to chimera detection

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Eric Coissac
2025-03-25 08:37:27 +01:00
parent 8b379d30da
commit 2ab6f67d58
4 changed files with 27 additions and 3 deletions
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6
cmd/obitools/obitag/main.go
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@@ -73,10 +73,12 @@ func main() {
var identified obiiter.IBioSequence
fsrb := fs.Rebatch(obidefault.BatchSize())
if obitag.CLIGeometricMode() {
identified = obitag.CLIGeomAssignTaxonomy(fs, references, taxo)
identified = obitag.CLIGeomAssignTaxonomy(fsrb, references, taxo)
} else {
identified = obitag.CLIAssignTaxonomy(fs, references, taxo)
identified = obitag.CLIAssignTaxonomy(fsrb, references, taxo)
}
obiconvert.CLIWriteBioSequences(identified, true)