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Big change iin the data model, and a first version of obiuniq

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This commit is contained in:
Eric Coissac
2022-02-21 19:00:23 +01:00
parent 9737f97084
commit 2e7c1834b0
43 changed files with 664 additions and 440 deletions
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6
pkg/obialign/pairedendalign.go
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@@ -220,7 +220,7 @@ func _FillMatrixPeRightAlign(seqA, qualA, seqB, qualB []byte, gap float64,
return _GetMatrix(scoreMatrix, la, la-1, lb1)
}
func PELeftAlign(seqA, seqB obiseq.BioSequence, gap float64,
func PELeftAlign(seqA, seqB *obiseq.BioSequence, gap float64,
arena PEAlignArena) (int, []int) {
if !_InitializedDnaScore {
@@ -244,7 +244,7 @@ func PELeftAlign(seqA, seqB obiseq.BioSequence, gap float64,
return score, arena.pointer.path
}
func PERightAlign(seqA, seqB obiseq.BioSequence, gap float64,
func PERightAlign(seqA, seqB *obiseq.BioSequence, gap float64,
arena PEAlignArena) (int, []int) {
if !_InitializedDnaScore {
@@ -268,7 +268,7 @@ func PERightAlign(seqA, seqB obiseq.BioSequence, gap float64,
return score, arena.pointer.path
}
func PEAlign(seqA, seqB obiseq.BioSequence,
func PEAlign(seqA, seqB *obiseq.BioSequence,
gap float64, delta int,
arena PEAlignArena) (int, []int) {
var score, shift int