obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-09 01:00:26 +00:00
Code Issues Packages Projects Releases Wiki Activity

Big change iin the data model, and a first version of obiuniq

Browse Source
This commit is contained in:
Eric Coissac
2022-02-21 19:00:23 +01:00
parent 9737f97084
commit 2e7c1834b0
43 changed files with 664 additions and 440 deletions
Download Patch File Download Diff File Expand all files Collapse all files

71
pkg/obiseq/pool.go
View File

@@ -14,8 +14,10 @@ var _BioSequenceByteSlicePool = sync.Pool{
}
func RecycleSlice(s *[]byte) {
*s = (*s)[:0]
_BioSequenceByteSlicePool.Put(s)
if s != nil && *s != nil {
*s = (*s)[:0]
_BioSequenceByteSlicePool.Put(s)
}
}
func GetSlice(values ...byte) []byte {
@@ -30,7 +32,7 @@ func GetSlice(values ...byte) []byte {
var BioSequenceAnnotationPool = sync.Pool{
New: func() interface{} {
bs := make(Annotation, 100)
bs := make(Annotation, 5)
return &bs
},
}
@@ -40,12 +42,16 @@ func RecycleAnnotation(a *Annotation) {
for k := range *a {
delete(*a, k)
}
BioSequenceAnnotationPool.Put(&(a))
BioSequenceAnnotationPool.Put(a)
}
}
func GetAnnotation(values ...Annotation) Annotation {
a := *(BioSequenceAnnotationPool.Get().(*Annotation))
a := Annotation(nil)
for a == nil {
a = *(BioSequenceAnnotationPool.Get().(*Annotation))
}
if len(values) > 0 {
goutils.CopyMap(a, values[0])
@@ -53,58 +59,3 @@ func GetAnnotation(values ...Annotation) Annotation {
return a
}
var _BioSequenceSlicePool = sync.Pool{
New: func() interface{} {
bs := make(BioSequenceSlice, 0, 5000)
return &bs
},
}
func (s *BioSequenceSlice) Recycle() {
*s = (*s)[:0]
_BioSequenceSlicePool.Put(s)
}
func GetBioSequenceSlicePtr(values ...BioSequence) *BioSequenceSlice {
s := _BioSequenceSlicePool.Get().(*BioSequenceSlice)
if len(values) > 0 {
*s = append(*s, values...)
}
return s
}
func GetBioSequenceSlice(values ...BioSequence) BioSequenceSlice {
return *GetBioSequenceSlicePtr(values...)
}
// var __bioseq__pool__ = sync.Pool{
// New: func() interface{} {
// var bs _BioSequence
// bs.annotations = make(Annotation, 50)
// return &bs
// },
// }
// func MakeEmptyBioSequence() BioSequence {
// bs := BioSequence{__bioseq__pool__.Get().(*_BioSequence)}
// return bs
// }
// func MakeBioSequence(id string,
// sequence []byte,
// definition string) BioSequence {
// bs := MakeEmptyBioSequence()
// bs.SetId(id)
// bs.Write(sequence)
// bs.SetDefinition(definition)
// return bs
// }
// func (sequence *BioSequence) Recycle() {
// sequence.Reset()
// __bioseq__pool__.Put(sequence.sequence)
// sequence.sequence = nil
// }