obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-08 16:50:27 +00:00
Code Issues Packages Projects Releases Wiki Activity

Big change iin the data model, and a first version of obiuniq

Browse Source
This commit is contained in:
Eric Coissac
2022-02-21 19:00:23 +01:00
parent 9737f97084
commit 2e7c1834b0
43 changed files with 664 additions and 440 deletions
Download Patch File Download Diff File Expand all files Collapse all files

18
pkg/obiseq/predicate.go
View File

@@ -1,9 +1,9 @@
package obiseq
type SequencePredicate func(BioSequence) bool
type SequencePredicate func(*BioSequence) bool
func (predicate1 SequencePredicate) And(predicate2 SequencePredicate) SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
return predicate1(sequence) && predicate2(sequence)
}
@@ -11,7 +11,7 @@ func (predicate1 SequencePredicate) And(predicate2 SequencePredicate) SequencePr
}
func (predicate1 SequencePredicate) Or(predicate2 SequencePredicate) SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
return predicate1(sequence) || predicate2(sequence)
}
@@ -19,7 +19,7 @@ func (predicate1 SequencePredicate) Or(predicate2 SequencePredicate) SequencePre
}
func (predicate1 SequencePredicate) Xor(predicate2 SequencePredicate) SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
p1 := predicate1(sequence)
p2 := predicate2(sequence)
return (p1 && !p2) || (p2 && !p1)
@@ -29,7 +29,7 @@ func (predicate1 SequencePredicate) Xor(predicate2 SequencePredicate) SequencePr
}
func (predicate1 SequencePredicate) Not() SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
return !predicate1(sequence)
}
@@ -38,7 +38,7 @@ func (predicate1 SequencePredicate) Not() SequencePredicate {
func HasAttribute(name string) SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
if sequence.HasAnnotation() {
_, ok := (sequence.Annotations())[name]
return ok
@@ -51,7 +51,7 @@ func HasAttribute(name string) SequencePredicate {
}
func MoreAbundantThan(count int) SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
return sequence.Count() > count
}
@@ -59,7 +59,7 @@ func MoreAbundantThan(count int) SequencePredicate {
}
func IsLongerOrEqualTo(length int) SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
return sequence.Length() >= length
}
@@ -67,7 +67,7 @@ func IsLongerOrEqualTo(length int) SequencePredicate {
}
func IsShorterOrEqualTo(length int) SequencePredicate {
f := func(sequence BioSequence) bool {
f := func(sequence *BioSequence) bool {
return sequence.Length() <= length
}