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Adds the ability to read gzip-tar file for the taxonomy dump

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This commit is contained in:
Eric Coissac
2025-01-24 11:47:59 +01:00
parent ffd67252c3
commit 3137c1f841
17 changed files with 305 additions and 64 deletions
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2
pkg/obitools/obifind/obifind.go
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@@ -53,7 +53,7 @@ func CLICSVTaxaIterator(iterator *obitax.ITaxon) *obicsv.ICSVRecord {
OptionsWithScientificName(CLIWithScientificName()),
OptionsWithPath(CLIWithPath()),
OptionsRawTaxid(CLIRawTaxid()),
OptionsSource(obioptions.CLISelectedNCBITaxDump()),
OptionsSource(obioptions.CLISelectedTaxonomy()),
)
return NewCSVTaxaIterator(iterator, options...)