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Changes to be committed:

Browse Source 
modified:   pkg/obiformats/ngsfilter_read.go
	modified:   pkg/obioptions/version.go
	modified:   pkg/obiutils/mimetypes.go
This commit is contained in:
Eric Coissac
2025-05-14 14:53:25 +02:00
parent f9324dd8f4
commit 3424d3057f
3 changed files with 33 additions and 9 deletions
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11
pkg/obiformats/ngsfilter_read.go
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@@ -89,7 +89,7 @@ func _parseMainNGSFilter(text string) (obingslibrary.PrimerPair, obingslibrary.T
}
func NGSFilterCsvDetector(raw []byte, limit uint32) bool {
r := csv.NewReader(bytes.NewReader(obiutils.DropLastLine(raw, limit)))
r := csv.NewReader(bytes.NewReader(obiutils.DropLastLine(raw)))
r.Comma = ','
r.ReuseRecord = true
r.LazyQuotes = true
@@ -110,7 +110,6 @@ func NGSFilterCsvDetector(raw []byte, limit uint32) bool {
if err != nil {
return false
}
if nfields == 0 {
nfields = len(rec)
} else if nfields != len(rec) {
@@ -133,16 +132,20 @@ func OBIMimeNGSFilterTypeGuesser(stream io.Reader) (*mimetype.MIME, io.Reader, e
return nil, nil, err
}
buf = buf[:n]
obiutils.HasBOM(buf)
mimetype.Lookup("text/plain").Extend(NGSFilterCsvDetector, "text/ngsfilter-csv", ".csv")
// Detect the MIME type using the mimetype library
mimeType := mimetype.Detect(buf[:n])
mimeType := mimetype.Detect(buf)
if mimeType == nil {
return nil, nil, err
}
// Create a new reader based on the read data
newReader := io.Reader(bytes.NewReader(buf[:n]))
newReader := io.Reader(bytes.NewReader(buf))
if err == nil {
newReader = io.MultiReader(newReader, stream)