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Adds the option --pairing-scale to obipairing

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Former-commit-id: c60416708467f5e818e70e08b3c512014b6212f0
This commit is contained in:
Eric Coissac
2023-12-07 12:28:16 +01:00
parent 008f33aee4
commit 37c3e16d5d
6 changed files with 42 additions and 27 deletions
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5
pkg/obitools/obitagpcr/pcrtag.go
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@@ -13,7 +13,7 @@ import (
)
func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
gap float64, delta, minOverlap int,
gap, scale float64, delta, minOverlap int,
minIdentity float64, fastAlign, fastScoreRel,
withStats bool) obiiter.IBioSequence {
@@ -50,7 +50,8 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
B := A.PairedWith()
consensus := obipairing.AssemblePESequences(
A.Copy(), B.ReverseComplement(false),
gap, delta, minOverlap, minIdentity, withStats, true,
gap, scale,
delta, minOverlap, minIdentity, withStats, true,
fastAlign, fastScoreRel, arena,
)