Accelerate the speed of very long fasta sequences, and more generaly of every format

This commit is contained in:
Eric Coissac
2025-03-12 13:29:41 +01:00
parent 83926c91e1
commit 3a1cf4fe97
8 changed files with 185 additions and 54 deletions

View File

@@ -187,13 +187,12 @@ func _ParseEmblFile(
func ReadEMBL(reader io.Reader, options ...WithOption) (obiiter.IBioSequence, error) {
opt := MakeOptions(options)
buff := make([]byte, 1024*1024*128) // 128 MB
entry_channel := ReadFileChunk(
opt.Source(),
reader,
buff,
1024*1024*128,
EndOfLastFlatFileEntry,
"\nID ",
)
newIter := obiiter.MakeIBioSequence()